Synthesis and properties of (E)-1,2-difluoroethylene derivatives: improvement of the ultraviolet light stability

The synthesis and properties of (E)-α,β-difluorostilbene derivatives were studied. In particular, we investigated three suppression methods of (E)–(Z) isomerisation by shortening the molecular conjugation length, which included the introduction of a fluorine atom into the ortho or para position of the benzene ring or the replacement of the benzene ring with a cyclohexane ring. The relationship between the molecular structure of liquid crystals and the level of isomerisation by ultraviolet (UV) light was discussed.     

Azobenzene-containing bent-core liquid crystals: an overview

ABSTRACT

Azo-functionalised materials are of special interest due to their photochromic nature, i.e. reversible trans–cis isomerisation upon photoirradiation. The combination of photosensitivity and liquid crystalline properties in the same molecule allows the material to be exploited for optical and optoelectronic devices. Azobenzene-based bent-core liquid crystals (BCLCs) have attracted considerable attention in recent years due to their rich mesomorphism. In this review, the main research directions and different molecular structures of bent-core molecules incorporating azobenzene unit and its subtype the so-called hockey-stick molecules are summarised. Additionally, azobenzene-based U-shaped molecules, hydrogen-bonded bent-shaped liquid crystalline materials and some selected examples of two different types of photoswitchable mesogenic dimers are provided. The nature, number and position of the lateral substitutions able to modify the phase behaviour of such BCLCs, affording in turn interesting liquid crystalline phases are discussed. Finally, the isomerisation process of these photosensitive BCLCs in solutions or in mesophases under the effect of UV–visible irradiation is summarised.     

Solvent Effects in the Homogeneous Catalytic Reduction of Propionaldehyde with Aluminium Isopropoxide Catalyst: New Insights from PFG NMR and NMR Relaxation Studies

Solvent effects in homogeneous catalysis are known to affect catalytic activity. Whilst these effects are often described using qualitative features, such as Kamlet-Taft parameters, experimental tools able to quantify and reveal in more depth such effects have remained unexplored. In this work, PFG NMR diffusion and T₁ relaxation measurements have been carried out to probe solvent effects in the homogeneous catalytic reduction of propionaldehyde to 1-propanol in the presence of aluminium isopropoxide catalyst. Using data on diffusion coefficients it was possible to estimate trends in aggregation of different solvents. The results show that solvents with a high hydrogen-bond accepting ability, such as ethers, tend to form larger aggregates, which slow down the molecular dynamics of aldehyde molecules, as also suggested by T₁ measurements, and preventing their access to the catalytic sites, which results in the observed decrease of catalytic activity. Conversely, weakly interacting solvents, such as alkanes, do not lead to the formation of such aggregates, hence allowing easy access of the aldehyde molecules to the catalytic sites, resulting in higher catalytic activity. The work reported here is a clear example on how combining traditional catalyst screening in homogeneous catalysis with NMR diffusion and relaxation time measurements can lead to new physico-chemical insights into such systems by providing data able to quantify aggregation phenomena and molecular dynamics.     

cis–trans Isomerisation of Substituted Aromatic Imines: A Comparative Experimental and Theoretical Study

The cis–trans isomerisation of N‐benzylideneaniline (NBA) and derivatives containing a central C?N bond has been investigated experimentally and theoretically. Eight different NBA molecules in three different solvents were irradiated to enforce a photochemical trans${{\mathop \rightarrow \limits ^{h\nu }_{}}}$ cis isomerisation and the kinetics of the thermal backreaction cis${{\mathop \rightarrow \limits ^{\Delta }_{}}}$ trans were determined by NMR spectroscopy measurements in the temperature range between 193 and 288 K. Theoretical calculations using density functional theory and Eyring transition‐state theory were carried out for 12 different NBA species in the gas phase and three different solvents to compute thermal isomerisation rates of the thermal back reaction. While the computed absolute rates are too large, they reveal and explain experimental trends. Time‐dependent density functional theory provides optical spectra for vertical transitions and excitation energy differences between trans and cis forms. Together with isomerisation rates, the latter can be used to identify “optimal switches” with good photochromicity and reasonable thermal stability.     

Computational investigation of the structures,properties, and host-guest chemistry of prism[n]arenes

The discovery of new and functional macrocyclic host compounds is an important part of supramolecular chemistry. Since the experimental synthesis, prism[n]arenes (Pr[n]As), a class of naphthol-based macrocyclic arenes, have attracted much attention. In this work, from the perspective of theoretical calculation and research, Pr[n]As (n = 4 ~ 7) were studied by density functional theory (DFT) calculations and molecular dynamics (MD) simulations. The prismatic configuration isomers, electronic structures, absorption spectra, and host-guest chemistry were discussed thoroughly. DFT calculation results showed that 1,5-, 3,7-, and “hybrid” 15,37-Pr[n]As were the most representative configurations with the rigid prismatic molecular skeleton. Based on time-dependent density functional theory (TD-DFT), the absorption spectra of Pr[n]As were all in the range of ultraviolet light which were mainly attributed to π-π* transitions. The molecular cavities of Pr[n]As were electron-rich and capable of accommodating a variety of cations or electron-conjugated molecules. MD simulation results showed that a Pr[n]A molecule was able to capture the guest molecule into its molecular cavity and maintain in the state of equilibrium in solvents.     

Discovery of potentially biased agonists of mu-opioid receptor (MOR) through molecular docking,pharmacophore modeling,and MD simulation

Opioids are well known for their potent analgesic efficacy and severe side effects. Studies have shown that analgesic effects are mediated by the downstream G-protein-dependent pathway of the μ-opioid receptor (MOR), and another β-arrestin-dependent pathway mediates side effects such as respiratory depression, constipation and tolerance etc. TRV130 is a biased ligand for G-protein-dependent pathway, which has high analgesia and has fewer side effects than morphine. In this study, the structure similarity search was performed on the IBSSC database using Oliceridine (TRV130) and PZM21 as templates. The 3D structure-based pharmacophore model was built and combined molecular docking prediction mode was selected to filter out small molecules, Finally, based on affinity prediction, four candidate molecules were obtained. Molecular dynamics simulations explored the detailed interaction mechanism of proteins with small molecules under dynamics. These results suggest that these candidate molecules are potential MOR agonists.     

Metabolic Fingerprinting of acs7 Mutant and Wild-Type Arabidopsis thaliana Under Salt Stress by Ultra Performance Liquid Chromatography Coupled with Quadrupole/Time of Flight Mass Spectrometry

The metabolic fingerprints of the acs7 mutant and wild-type (WT) of the model plant Arabidopsis thaliana with and without salt stress were compared by ultra-performance liquid chromatography coupled with quadrupole time of flight mass spectrometry (UPLC-QTOF MS). Separations were performed on C₁₈ column (2.1 mm × 100 mm, 1.7 µm). A linear gradient elution of acetonitrile and 0.1% formic acid solution was used at a flow rate of 0.4 mL/min. Principal components analysis (PCA) and partial least squares-discriminant analysis (PLS-DA) were combined for the data treatment. A clear discrimination was obtained by both PCA and PLS-DA. The acs7 salt-treated group was closer to the control group samples than the WT salt-treated group samples. Several potential stress-induced ions were revealed as markers of salt stress. The markers 12-oxophytodienoic acid (OPDA), arabidopside A, sinapoyl malate, linolenic acid, and abscisic acid were identified by the accurate mass (from TOF MS). Linolenic acid and OPDA are the biosynthetic precursors of jasmonic acid (JA) by the octadecanoid pathway. The JA content determination results indicated that salt stress increased the JA levels in the leaves of the WT plant, but there was no significant increase in the JA content of acs7 after salt treatment. These data suggested the responses to salt stress of the acs7 mutant and WT A. thaliana were different in the octadecanoid pathway.     

A Photochemical/Thermal Switch Based on 4,4′-Bis(benzimidazolio)stilbene: Synthesis and Supramolecular Properties.

Stilbene derivatives are well-recognised substructures of molecular switches based on photochemically and/or thermally induced (E)/(Z) isomerisation. We combined a stilbene motif with two benzimidazolium arms to prepare new sorts of supramolecular building blocks and examined their binding properties towards cucurbit[n]urils (n=7, 8) and cyclodextrins (β-CD, γ-CD) in water. Based on the ¹H NMR data and molecular dynamics simulations, we found that two distinct complexes with different stoichiometry, i. e., guest@β-CD and guest@β-CD₂, coexist in equilibrium in a water solution of the (Z)-stilbene-based guests. We also demonstrated that the bis(benzimidazolio)stilbene guests can be transformed from the (E) into the (Z) form via UV irradiation and back via thermal treatment in DMSO.     

Tuning helical twisting power and photoisomerisation kinetics of axially chiral cyclic azobenzene dopants in cholesteric liquid crystals

ABSTRACT

Significant attention has been paid to improve the helical twisting power (β) and Δβ between the two different isomers of axially chiral azobenzene dopants in cholesteric liquid crystals (CLCs); however, the correlations between the vales (β and Δβ) with the molecular structures as well as photoisomerisation kinetics are far from clear. In this study, a series of binaphthyl-azobenzene cyclic dopants R1–R3 with different lengths of alkoxy chain was synthesised, which exhibited photochemically reversible trans–cis isomerisation in both organic solvents and liquid crystal hosts. When doping into a nematic liquid crystal, dopant R2 with one linking alkoxy group showed the highest values of β and Δβ. The results revealed that the β value was related to the dihedral angle between two naphthyl planes and the miscibility between the dopants and the host molecule. Moreover, Δβ was also depended on the photoisomerisation quantum yields. With increasing length of alkoxyl chain, the photoisomerisation rate constant of dopants increased upon ultraviolet irradiation and decreased for the reverse process upon visible light irradiation either in isotropic acetonitrile or in CLCs. These results enable the precise tuning of the pitch and selective reflection wavelength of CLCs.     

The cis-trans Isomerisation of Homologous 2-Hydroxycycloalkanecarboxylic Acids under Basic Conditions

The cis→trans isomerisation of homologous 2-hydroxycycloalkanecarboxylic acids in strongly basic aqueous solution was studied starting from the cis isomers. It was found that the cyclopentane, cyclohexane and cycloheptane homologues afforded synthetically useful amounts of the trans acids and the procedure resulted in relatively small quantities of the corresponding olefinic acids. In contrast, the isomerisation of the cis-2-hydroxycyclooctanecarboxylic acid produced roughly equal amounts of the cis and trans isomers and the 1-cyclooctenecarboxylic acid at equilibrium. Molecular modelling with the PM3 semiempirical method of the reactants, products and the intermediates applying explicit water molecules as reaction medium gave a fair estimate for the rate sequence of the idealised （dehydration-free） isomerisation reactions in aqueous base solution.     

Theoretical study of the syn- and anti-conformers of 2,2ʹ-bifuran derivatives: rotational barrier and solvent effect

The optimised molecular structures, vibrational wavenumbers and corresponding vibrational assignments of the syn- and anti-conformers of 2,2?-bifuran and its nitro, fluoro, methyl and hydroxyl derivatives were obtained using density functional theory. The starting structures with C₂ symmetry of all the ground state structures were considered and the transition state arising from syn-anti isomerisation was also modelled. All structures were fully optimised, and the geometries, dipole moments, charge, thermodynamic properties, and energies are reported. The calculated vibrational wavenumbers were assigned to the various fundamental modes of vibrations. The integral Equation Formalism Polarisation Continuum Model (IEF-PCM) was used to calculate the optimised geometry and the vibrational wavenumbers for all the compounds in different solvents. The results indicate that in the gas phase, the syn-conformer is more stable while in solution phases the conformational preference depends on the polarity of the solvent.     

Electron ionisation mass spectral studies of bridgehead‐fused Δ2‐norbornanethiazolines

The electron ionisation (EI) mass spectra of a series of bridgehead‐fused Δ²‐norbornanethiazolines, a new class of bridgehead‐norbornane derivatives, have been studied and their cleavage mechanisms rationalised on the basis of the substituent shifts as well as on the identification of relevant peaks through accurate mass measurements and collision‐induced dissociation tandem mass spectrometric experiments. The fragmentation patterns of isomeric pairs of 6,6‐ and 10,10‐dimethylnorbornanethiazolines are almost identical, probably due to an initial isomerisation of molecular ion previous to the fragmentation. In general, the dominant peaks in the spectra of all the studied compounds originate from initial α‐cleavages of C(5)–C(6) or C(1)–C(10) bonds, followed by concomitant homolytic cleavage of C(1)–C(9) and C(7)–C(10) bonds. The driving force for this fragmentation pathway, directed by the gem‐dimethyl group, is the formation of a highly stabilised thiazolilmethyl cation which constitutes the base peak in all the spectra and allows the identification of these interesting ligands. Copyright © 2009 John Wiley & Sons, Ltd.     

Understanding the Complex Surface Interplay for Extraction: A Molecular Dynamics Study

By means of classical molecular dynamics simulation the interfacial properties of methanol and n-dodecane, which are two potential candidate solvents for use in non-aqueous liquid–liquid extraction, were assessed. The question of how the interface changes depending on the concentration of extractant (tri-n-butyl phosphate) and salt (LiCl) is addressed. Two different models to represent systems were used to evaluate how LiCl and tri-n-butyl phosphate affect mutual miscibility, and how the last-named behaves depending on the chemical environment. Tri-n-butyl phosphate increases the mutual solubility of the solvents, whereas LiCl counteracts it. The extractant was found to be mostly adsorbed on the interface between the solvents, and therefore the structural features of the adsorption were investigated. Adsorption of tri-n-butyl phosphate changes depending on its concentration and the presence of LiCl. It exhibits a preferential orientation in which the butyl chains point at the n-dodecane phase and the phosphate group points at the methanol phase. For high concentrations of tri-n-butyl phosphate, its molecular orientation is preserved by diffusion of the excess molecules into both the methanol and n-dodecane phases. However, LiCl hinders the diffusion into the methanol phase, and thus increases the concentration of tri-n-butyl phosphate at the interface and forces a rearrangement with subsequent loss of orientation.     

Comparative estimation of the efficiency of structure formation and dispersion interactions in organic solvents of varying nature and polarity

The solubilities of n-tetracosane and dotriacontane in more than 50 solvents (aliphatic and aromatic hydrocarbons, their halo derivatives, alcohols, ethers, ketones, amines, etc.) miscible with liquid aliphatic hydrocarbons were determined at 293±1 K. The increments of the methylene group in hypothetical extraction systems n-octane — solvent and the free energies of methylene group transfer from solvent to n-octane were calculated. The values were found to vary within wide limits. For the overwhelming majority of polar and low-polar solvents, the energies are negative due to self-association of solvents according to the type of spatial structure. Positive energies are due to the closer packing of some low-polar solvent molecules (carbon tetrachloride and cyclohexane) in the structure compared to octane and to the absence of molecular self-association. The closer packing of these molecules leads to higher efficiency of dispersion interactions between the solvents and paraffins compared to octane.     

How Does the Trans–Cis Photoisomerization of Azobenzene Take Place in Organic Solvents?

The trans–cis photoisomerization of azobenzene‐containing materials is key to a number of photomechanical applications, but the actual conversion mechanism in condensed phases is still largely unknown. Herein, we study the ${{\rm{n}}{\rm{,{\rm \pi} ^\ast }}}$ isomerization in a vacuum and in various solvents via a modified molecular dynamics simulation adopting an ab initio torsion–inversion force field in the ground and excited states, while allowing for electronic transitions and a stochastic decay to the fundamental state. We determine the trans–cis photoisomerization quantum yield and decay times in various solvents (n‐hexane, anisole, toluene, ethanol, and ethylene glycol), and obtain results comparable with experimental ones where available. A profound difference between the isomerization mechanism in vacuum and in solution is found, with the often neglected mixed torsional–inversion pathway being the most important in solvents.     

Conformation of ionizable poly Para phenylene ethynylene in dilute solutions

The conformation of dinonyl poly para phenylene ethynylenes (PPEs) with carboxylate side chains, equilibrated in solvents of different quality have been studied using molecular dynamics simulations. PPEs are of interest because of their tunable electro‐optical properties, chemical diversity, and functionality which are essential in wide range of applications. The polymer conformation determines the conjugation length and their assembly mode and affects electro‐optical properties which are critical in current and potential uses. This study investigates the effect of carboxylate fraction on PPEs side chains on the conformation of chains in the dilute limit, in solvents of different quality. The dinonyl PPE chains are modeled atomistically, where the solvents are modeled both implicitly and explicitly. Dinonyl PPEs maintained a stretched out conformation up to a carboxylate fraction f of 0.7 in all solvents studied. The nonyl side chains are extended and oriented away from the PPE backbone in toluene and in implicit good solvent, whereas in water and implicit poor solvent, the nonyl side chains are collapsed toward the PPE backbone. Rotation around the aromatic ring is fast and no long range correlations are seen within the backbone. © 2015 Wiley Periodicals, Inc. J. Polym. Sci., Part B: Polym. Phys. 2016 , 54, 582–588     

Mechanistic Insights into the Photoisomerization of N,N′-Disubstituted Indigos

N,N′-disubstituted indigos are photoswitchable molecules that have recently caught the attention due to their addressability by red-light. When alkyl and aryl groups are utilized as the N-substituents, the thermal half-lives of Z isomers can be tuned independently while maintaining the advantageous red-shifted absorption spectra. To utilize these molecules in real-world applications, it is of immense importance to understand how their molecular structures as well as the environment influence their switching properties. To this end, we probed their photoisomerization mechanism by carrying out photophysical and computational studies in solvents of different polarities. The fluorescence and transient absorption experiments suggest for more polar excited and transition states, which explains the bathochromic shifts of absorption spectra and shorter thermal half-lives. On the other hand, the quantum chemical calculations reveal that in contrast to N-carbonyl groups, N-alkyl and N-aryl substituents are not strongly conjugated with the indigo chromophore and can thus serve as a tool for tuning the thermal stability of Z isomers. Both approaches are combined to provide in-depth understandings of how indigos undergo photoswitching as well as how they are influenced by N-substituent and the chemical surroundings. These mechanistic insights will serve as guiding principles for designing molecules eyeing broader applications.     

The Formation of Imidazolium Salt Intimate (Contact) Ion Pairs in Solution

1‐n‐Butyl‐2,3‐dimethylimidazolium (BMMI) ionic liquids (ILs) associated with different anions undergo H/D exchange preferentially at 2‐Me group of the imidazolium in deuterated solvents. This process is mainly related to the existence of ion pairs rather than the anion basicity. The H/D exchange occurs in solvents (CDCl₃ and MeCN for instance) in which intimate contact ion pairs are present and the anion possesses a labile H in its structure, such as hydrogen carbonate and prolinate. In D₂O, separated ion pairs are formed and the H/D exchange does not occur. A plausible catalytic cycle is that the IL behaves as a neutral base in the course of all H/D exchange processes. NMR experiments, density functional calculations, and molecular dynamics simulations corroborate these hypotheses.     

Precise Control of Molecular Self-Diffusion in Isoreticular and Multivariate Metal-Organic Frameworks

Understanding the factors that affect self-diffusion in isoreticular and multivariate (MTV) MOFs is key to their application in drug delivery, separations, and heterogeneous catalysis. Here, we measure the apparent self-diffusion of solvents saturated within the pores of large single crystals of MOF-5, IRMOF-3 (amino-functionalized MOF-5), and 17 MTV-MOF-5/IRMOF-3 materials at various mole fractions. We find that the apparent self-diffusion coefficient of N,N-dimethylformamide (DMF) may be tuned linearly between the diffusion coefficients of MOF-5 and IRMOF-3 as a function of the linker mole fraction. We compare a series of solvents at saturation in MOF-5 and IRMOF-3 to elucidate the mechanism by which the linker amino groups tune molecular diffusion. The ratio of the self-diffusion coefficients for solvents in MOF-5 to those in IRMOF-3 is similar across all solvents tested, regardless of solvent polarity. We conclude that average pore aperture, not solvent-linker chemical interactions, is the primary factor responsible for the different diffusion dynamics upon introduction of an amino group to the linker.