基于菁染料响应G-四链体结构变化的半胱氨酸检测探针

半胱氨酸是生物体中起着重要作用的还原性氨基酸,其在体内的含量变化可能会诱发机体发生多种病变。因此高选择性、高灵敏度和低成本的半胱氨酸检测技术具有重要意义。目前,高效的半胱氨酸检测方法有毛细管电泳、质谱、高效液相色谱和表面增强拉曼散射等,这些方法往往需要复杂的样品制备和精细的实验仪器,可能会限制其在半胱氨酸检测中的应用。本文利用富含鸟嘌呤的DNA链序列在钾、钠等金属离子诱导下形成对汞离子产生特殊响应的二级结构,而菁染料能够对DNA结构进行识别,并由此引起其超分子聚集形式的改变,致使其紫外和可见光谱性质随之变化。最终以Hg²⁺调控G-四链体与菁染料(ETC)组建的传感器,实现对溶液体系中半胱氨酸高选择性的快速可视化检测。     

Productive Manipulation of Cyanine Dye π‐Networks

Polymethine bridges in cyanine dyes may be constrained by setting them into edge‐fused ring systems, or extended by conjugation with carefully chosen heterocycles. Recent studies have shown that modifications like these can give significantly brighter dyes with red‐shifted absorbance and emission maxima.     

Photo-isomerization of the Cyanine Dye Alexa-Fluor 647 (AF-647) in the Context of dSTORM Super-Resolution Microscopy

Cyanine dyes, as used in super-resolution fluorescence microscopy, undergo light-induced “blinking”, enabling localization of fluorophores with spatial resolution beyond the optical diffraction limit. Despite a plethora of studies, the molecular origins of this blinking are not well understood. Here, we examine the photophysical properties of a bio-conjugate cyanine dye (AF-647), used extensively in dSTORM imaging. In the absence of a potent sacrificial reductant, light-induced electron transfer and intermediates formed via the metastable, triplet excited state are considered unlikely to play a significant role in the blinking events. Instead, it is found that, under conditions appropriate to dSTORM microscopy, AF-647 undergoes reversible photo-induced isomerization to at least two long-lived dark species. These photo-isomers are characterized spectroscopically and their interconversion probed by computational means. The first-formed isomer is light sensitive and transforms to a longer-lived species in modest yield that could be involved in dSTORM related blinking. Permanent photobleaching of AF-647 occurs with very low quantum yield and is partially suppressed by the anaerobic redox buffer.     

Closing the Ring to Bring Up the Light: Synthesis of a Hexacyclic Acridinium Cyanine Dye

The synthesis of a geometrically constrained and near‐planar hexacyclic acridinium cyanine dye 9 is reported. When compared to its unlocked and non‐fluorescent monomethine cyanine dye analogue 3 , this photostable dye emits in the green area of the spectrum with a remarkable quantum yield close to unity in organic solvents and above 0.5 in water. A detailed steady‐state and time‐resolved spectroscopic study revealed that dye 9 forms emissive aggregates in water, which are responsible for a red‐shifted and broadened emission band and longer emission lifetime, τ≈33 compared to 6.5–7.0 ns for the monomeric dye. Dye 9 also binds strongly to DNA (both duplex and quadruplex) in its monomeric form and is very efficiently taken up by cells, in which it accumulates primarily into the nucleus.     

冠醚菁染料的研究*

本文就冠醚菁染料及其重要中间体的合戍方法、冠醚菁染料的络合性能、光热稳定性和光谱增感性能的研究进行了系统的介绍与评述,同时反映了国内外有关冠醚化合物在感光材料中的应月以及冠醚菁染料在其他领域中的最新研究成果,显示了它们潜在的应用前景。     

Organic Dye Adsorption by Amphiphilic Tris‐Urea Supramolecular Hydrogel

The development of an effective adsorbent for cleansing polluted water is required for environmental purification. In this respect, a supramolecular hydrogel constructed by the self‐assembly of small molecules could be a strong candidate. Adsorption experiments of organic dyes were performed using supramolecular hydrogels of amphiphilic tris‐urea 1 . Cationic organic dyes were adsorbed efficiently; indeed, the adsorption of methylene blue was as high as 4.19 mol equivalents relative to 1 . Two luminescence peaks were observed in the rhodamine 6G‐adsorbed supramolecular hydrogels, and their ratios varied with the amount of dye adsorbed. Fluorescence microscopy images of the supramolecular hydrogel at lower dye levels exhibited fibrous fluorescence consistent with the fibrous aggregates of 1 . According to these results, adsorption may proceed gradually, that is, occurring initially on the fibers and later in the aqueous spaces of the supramolecular hydrogel.     

DFT Investigation on the Trans-cis Photoisomerization of Pentamethine Cyanine Dye Model Molecule

The trans-cis photoisomerization of pentamethine cyanine dye (Cy5) has been theoretically investigated by the analysis on an analogical molecule model. All possible isomers have been searched by rotating the different bridge C-C bonds of the model. The relative stability of the isomers for the ground and first excited states as well as the corresponding excitation mechanism has been envisaged by DFT and time-dependent DFT method. The results show different conjugation degree of the isomers resulting in different absorption energy upon the different C-C bridge bond rotation. From the analyses of electronic density distribution of the frontier orbitals, it is predicted that there is charge transfer besides the π-π* excitation for the cyanine dye model, which makes the mechanism and photo-properties different form those of other conjugated molecules.     

Determination of Nucleic Acids Based on Shifting the Association Equilibrium between a Heptamethine Cyanine Dye and Poly-Lysine

A near-infrared (near-IR) fluorescence recovery method for the determination of nucleic acids is presented. This method employs a two-reagent system composed of anionic heptamethines cyanine (HMC) and polycationic poly-lysine. The fluorescence of HMC, with maximum excitation and emission wavelengths at 778 and 804nm, respectively, was quenched by poly-lysine in proper concentration, but recovered by adding nucleic acids. Under optimal conditions, the recovered fluorescence was proportional to the concentration of nucleic acids. The calibration graphs are linear over the range of 5–300ngmL^–1 for herring sperm DNA (FS DNA), 2–100ngmL^–1 for calf thymus DNA (CT DNA) and 5–500ngmL^–1 for snake ovum RNA (SO RNA). The corresponding detection limits are 1.49ngmL^–1 for FS DNA, 0.7ngmL^–1 for CT DNA and 1.61ngmL^–1 for SO RNA, respectively. Four synthetic and three real nucleic acid samples were determined with satisfactory results.     

Covalently Linked Bis(Amido-Corroles): Inter- and Intramolecular Hydrogen-Bond-Driven Supramolecular Assembly

Four bis-corroles linked by diamide bridges were synthesized through peptide-type coupling of a trans-A₂B-corrole acid with aliphatic and aromatic diamines. In the solid state, the hydrogen-bond pattern in these bis-corroles is strongly affected by the type of solvent used in the crystallization process. Although intramolecular hydrogen bonds play a decisive role, they are supported by intermolecular hydrogen bonds and weak N−H⋅⋅⋅π interactions between molecules of toluene and the corrole cores. In an analogy to mono(amido-corroles), both in crystalline state and in solutions, the aliphatic or aromatic bridge is located directly above the corrole ring. When either ethylenediamine or 2,3-diaminonaphthalene are used as linkers, incorporation of polar solvents into the crystalline lattice causes a roughly parallel orientation of the corrole rings. At the same time, both NHCO⋅⋅⋅NH corrole hydrogen bonds are intramolecular. In contrast, solvation in toluene causes a distortion with one of the hydrogen bonds being intermolecular. Interestingly, intramolecular hydrogen bonds are always formed between the –NHCO– functionality located further from the benzene ring present at the position 10-meso. In solution, the hydrogen-bonds pattern of the bis(amido-corroles) is strongly affected by the type of the solvent. Compared with toluene (strongly high-field shifted signals), DMSO and pyridine disrupt self-assembly, whereas hexafluoroisopropanol strengthens intramolecular hydrogen bonds.     

光谱法研究噻菁染料与血清蛋白的相互作用

本文通过吸收和荧光光谱法研究了一种噻菁染料与人血清蛋白及牛血清蛋白的相互作用。吸收光谱数据表明,与血清蛋白结合后,噻菁染料单体的吸收峰发生红移,同时强度也有很大变化;还通过吸收光谱计算确定了噻菁染料与血清蛋白的结合位点数（ n ）。与人血清蛋白或牛血清蛋白结合后,噻菁染料的荧光量子产率增加。分析噻菁染料的荧光强度随溶液中血清蛋白浓度的变化得到了二者反应的表观结合常数（ K _a）和自由能变化（ ΔG ）。根据表观结合常数（ K _a）可以判断,人血清蛋白比牛血清蛋白与噻菁染料的结合更强。     

Study on the Direct Photooxidation of Near-Infrared Absorbing Benzothiazolone Cyanine Dye

IntroductionThereisconsiderableteclndcalinterestillcyallilledyeswitllabsorptionInakilnaintilenear-infraredregion,principallybecauseoftheirpotelltialapplicationinareassuchaslaserandopticaldaisstorageteclmology'.However,tileligllifastnesspropertiesofcyaninedyesarenotasgoodasUloseoftileoillerdyes,i.e.Uleyareeasilypllotooxidized.Therefore,itisverysignificanttostudytilepllotooxidationofcyaninedyes.WehavepreviouslyreportedaseriesofstudiesOilhlepllotofadingofsomefunctionalcyaninedyes'.'.RecentstUd…     

多烯和花菁染料分子设计及其非线性光学性质研究进展

根据一种新的增强分子非线性光学性质的设计思想 ,讨论了多烯和花菁染料的结构和性质关系 ,综述了这类染料的非线性光学性质及其应用进展 ,并对有机非线性光学材料的发展前景进行了预测。     

五甲川菁染料敏化SnO_2纳光结构多孔膜电极的光电化学研究

研究了五甲川菁敏化SnO_2纳米结构电极的光电化学行为.结合循环伏安曲线图及五甲川菁的光吸收阈值,初步确定五甲川菁染料电子基态和激发态能级位置.结果表明,五甲川菁染料电子激发态能级位置能与SnO_2纳米粒子导带边位置相匹配,因而使用该染料敏化可以显著地提高SnO_2纳米结构电极的光电流,使SnO_2纳米结构电极吸收波长红移至可见光区和近红外区,光电转换效率得到明显改善,IPCE值(单色光的转换效率)最高可达45.7％.     

基于天然小分子化合物的超分子手性自组装

超分子手性普遍存在于自然界和生命体内,可通过分子在非共价键作用下有序排列形成,对生命科学、药物化学及材料科学的发展起着重要的作用。天然产物来源广泛,具有独特的立体结构和多手性中心,由于其分子手性可以在组装过程中随着分子的有序堆积得到传递和放大,形成超分子手性结构,因此是一类优良的超分子手性构筑基元。研究天然产物的手性自组装,不仅可以拓展其在超分子化学中的应用,还能深化人们对自然界和生命体中手性现象的理解。本文总结了近年来甾体、三萜、氨基酸、糖等天然产物小分子化合物在超分子手性自组装方面的研究进展及其未来的发展前景。     

A Cyanine Dye Encapsulated Porous Fibrous Mat for Naked‐Eye Ammonia Sensing

Electrospun ultrathin fiber‐based sensors are desirable because of their practicality and sensitivity. Ammonia‐detection systems are in high demand in different areas, including the industrial and agricultural fields. However, current technologies rely on large and complex instruments that restrict their actual utilization. Herein, we report a flexible naked‐eye ammonia sensor, the polylactic acid–cyanine (PLA‐Cy) fibrous mat, which was fabricated by blending a carboxyl‐functionalized cyanine dye ( D1 ) into electospun PLA porous fibers. The sensing mat was shown to undergo a naked‐eye‐detectable color change from white to blue upon exposure to ammonia vapor. The mat showed high selectivity to ammonia gas with a detection limit of 3.3 ppm. Aggregated D1 was first encapsulated by PLA and was then ionized by NH₃. These mechanisms were examined by photophysical studies and scanning electron microscopy. The aggregation–deaggregation process of D1 in the PLA‐Cy fibrous mat led to the color change. This work provides a facile method for the naked‐eye detection of ammonia and a novel strategy for the use of organic dyes in ammonia sensing.     

A Complex Comprising a Cyanine Dye Rotaxane and a Porphyrin Nanoring as a Model Light-Harvesting System

A nanoring-rotaxane supramolecular assembly with a Cy7 cyanine dye (hexamethylindotricarbocyanine) threaded along the axis of the nanoring was synthesized as a model for the energy transfer between the light-harvesting complex LH1 and the reaction center in purple bacteria photosynthesis. The complex displays efficient energy transfer from the central cyanine dye to the surrounding zinc porphyrin nanoring. We present a theoretical model that reproduces the absorption spectrum of the nanoring and quantifies the excitonic coupling between the nanoring and the central dye, thereby explaining the efficient energy transfer and demonstrating similarity with structurally related natural light-harvesting systems.     

超分子砌块间苯二酚杯芳烃的研究进展

间苯二酚杯芳烃是一类以间苯二酚为单元的杯芳烃, 作为新一代超分子砌块, 在分子催化、分子识别、超分子自组装、晶体工程和纳米材料等方面都获得了广泛的应用, 已成为当今化学研究的新热点. 综述了间苯二酚杯芳烃的功能化修饰及其应用新进展.