Protonation Sites in Gaseous Pyrrole and Imidazole: A Neutralization–Reionization and ab initio Study

Mild gas-phase acids C₄H₉⁺ and NH₄⁺ protonate pyrrole at C-2 and C-3 but not at the nitrogen atom, as determined by deuterium labeling and neutralization–reionization mass spectrometry. Proton affinities in pyrrole are calculated by MP2/6–311G(2d, p) as 866, 845 and 786 kJ mol^-1 for protonation at C-2, C-3 and N, respectively. Vertical neutralization of protonated pyrrole generates bound radicals that in part dissociate by loss of hydrogen atoms. Unimolecular loss of hydrogen atom from C-2-and C-3-protonated pyrrole cations is preceded by proton migration in the ring. Protonation of gaseous imidazole is predicted to occur exclusively at the N-3 imine nitrogen to yield a stable aromatic cation. Proton affinities in imidazole are calculated as 941, 804, 791, 791 and 724 for the N-3, C-4, C-2, C-5 and N-1 positions, respectively. Radicals derived from protonated imidazole are only weakly bound. Vertical neutralization of N-3-protonated imidazole is accompanied by large Franck–Condon effects which deposit on average 183 kJ mol^-1 vibrational energy in the radicals formed. The radicals dissociate unimolecularly by loss of hydrogen atom, which involves both direct N-H bond cleavage and isomerization to the more stable C-2 H-isomer. Potential energy barriers to isomerizations and dissociations in protonated pyrrole and imidazole isomers and their radicals were investigated by ab initio calculations.     

配合物[Co(qina)2(H2O)2]•2DMSO的晶体结构及其与DNA作用研究

合成了配合物[Co(qina)₂(H₂O)₂]•2DMSO单晶(qina为喹哪啶酸). 配合物属于单斜晶系, P2(1)/n空间群, 其分子结构为规则的八面体构型, qina以氮原子和羧酸根氧原子与Co^2＋离子配位, 两个水分子为轴向配位. 配合物之间富有配位水分子分别与DMSO的氧原子、qina中未与Co(II)配位的氧之间氢键作用. 配合物与鱼精DNA作用的紫外光谱和荧光光谱表明, 两者之间有一定的相互作用, 并可能以局部插入方式为主.     

A novel fragmentation of trimethylsilyl ethers of 3β-hydroxy-Δ5-steroids

An ion formed by loss of 56 mass units from the molecular ion is often seen in mass spectra of trimethylsilyl ethers of C₁₉ and C₂₁ steroids having a 3β-hydroxy-Δ⁵ structure and an oxo group at C-17 or C-20. The nature of this fragment was investigated by the use of perdeuteriotrimethylsilyl ether derivatives and of [4-¹⁴C], [3-¹⁸O], [4,4-²H₂] and [2,2,4,4-²H] labelled derivatives of 3β-hydroxy-5-androsten-17-one and 3β-hydroxy-5-pregnen-20-one. Evidence is presented to show that the neutral fragment of mass 56 is composed of carbon atoms 1, 2 and 3, the oxygen at C-3 and four hydrogen atoms. During the fragmentation process, the trimethylsilyl group and one of the hydrogens at C-2 are transferred to the fragment that carries the charge.     

NMR and stereochemical studies of non aromatic heterocyclic compounds—II : 13C and 31P NMR of 2-methoxy-1,3,2-dioxaphosphorinanes

¹³C and ³¹P chemical shift data for eight 2-methoxy-1,3,2-dioxaphosphorinanes are reported. Examination of pairs of geometrical isomers, which differ only in the orientation of the OMe substituent on P^III, have shown that both the ³¹P and the ¹³C signals of C_4,6 atoms appear 3–4 ppm at higher field when the OMe is axial compared with the equatorial isomer. This observation can be associated with the 1–3 syn diaxial interaction between the phosphorus axial substituent and the axial hydrogens on C_4,6 and should thus constitute, in the future, a supplementary tool for the structural analysis of this kind of compound. Important long range δ effects were observed both on ¹³C and especially on ³¹P chemical shifts. It is suggested that the high field δ_e effects could reflect a direct stereoelectronic interaction between the P atom and the cyclic C-5 atom. This interpretation is supported by a study of the ³¹P…¹³C coupling constants and their stereochemical dependence.     

Hydrogen production in the radiolysis of bromide solutions

The radiolysis of water without a protecting agent is found to form a low steady-state concentration of molecular hydrogen. The addition of bromide anion leads to a linear response for molecular hydrogen production with doses up to 300 kGy. Bromide concentrations are found to remain constant over this dose range due to recycling of the oxidized species containing the bromine atom by hydrated electrons, H atoms or HO₂ (O₂⁻). This process appears to occur many times with little change in total bromide anion concentration. Efficient electron scavengers are found to have no effect on bromide anion concentration except possibly at extremely high concentrations. Nitrous oxide saturated solutions show a significant depletion of bromide anion concentration with a concurrent formation of BrO₃⁻ and a suppressed yield of molecular hydrogen.     

Syntheses,crystal structures,and spectroscopic properties of copper(II) complexes with 3,14-diethyl-2,6,13,17-tetraazatricyclo(16.4.0.07,12)docosane

[Cu(L)(NO₃)₂] (1) and [Cu(L)(H₂O)₂](SCN)₂ (2) [L?=?3,14-diethyl-2,6,13,17-tetraazatricyclo(16.4.0.0^7,12)docosane] have been prepared and structurally characterized by single-crystal X-ray diffraction at 100?K. For these constrained macrocycle complexes, copper(II) exists in a tetragonally distorted octahedral environment with the four nitrogen atoms of the macrocyclic ligands and two oxygen atoms from either nitrate or water in axial positions. The macrocyclic ligands in both complexes adopt the most stable trans-III conformation. The Cu–N distances are 2.021(2)–2.047(2)?Å and typical but the axial ligands are weakly coordinating, with Cu–O bond lengths, 2.506(2)?Å for 1 and 2.569(2)?Å for 2, due to the pseudo Jahn–Teller effect. The crystals are stabilized by a 3-D network by intra and intermolecular hydrogen bonds that are formed among the secondary nitrogen hydrogen atoms and nitrate in 1, and intermolecular hydrogen bonds are formed by water and thiocyanates in 2. The electronic absorption and IR spectral properties are also discussed.     

Generation of Iron Atoms in the Gas Phase by Microwave‐Induced Plasma Afterglows

A fast‐flow reactor technique is described by which Fe atoms can be produced in the gas phase in the afterglow of microwave‐induced plasmas in hydrogen/argon and hydrogen/helium mixtures. When the iron salt FeCl₃(s) was brought into the gas phase by thermal sublimation at temperatures between 360 and 405 K, it was partly converted to Fe atoms by reaction of the gaseous compounds Fe_xCl_3x(g) with hydrogen atoms. The Fe atoms were detected by atomic absorption spectroscopy (AAS). It was shown that sublimation of the salt is the rate‐determining step of the overall plasma‐afterglow atomisation process. Experimental conditions for the generation of Fe atoms suited to kinetic studies start at a temperature of 303 K. In the downstream region the concentration of Fe atoms decays due to diffusion to the reactor wall. Binary diffusion coefficients D_Fe/Ar and D_Fe/He of 231.5±6.6 and 370.0±15.5 cm² s^?1 Torr at 303 K, respectively, were determined.     

Zundel‐like and Eigen‐like Hydrated Protons on a Platinum Surface

The nature of hydrated protons is an important topic in the fundamental study of electrode processes in acidic environment. For example, it is not yet clear whether hydrated protons are formed in the solution or on the electrode surface in the hydrogen evolution reaction on a Pt electrode. Using mass spectrometry and infrared spectroscopy, we show that hydrogen atoms are converted into hydrated protons directly on a Pt(111) surface coadsorbed with hydrogen and water in ultrahigh vacuum. The hydrated protons are preferentially stabilized as multiply hydrated species (H₅O₂⁺ and H₇O₃⁺) rather than as hydronium (H₃O⁺) ions. These surface‐bound hydrated protons may play an important role in the interconversion between adsorbed hydrogen atoms and solvated protons in solution.     

Syntheses,Structural, and Spectroscopic Properties of Copper(II) Complexes of Constrained Macrocyclic Ligands

The complexes [Cu(L¹)(H₂O)₂](BF₄)₂ · 2H₂O ( 1 ) [L¹ = 5, 16‐dimethyl‐2, 6, 13, 17‐tetraazatricyclo(14, 4, 0^1.18,0^7.12)docosane] and 0.5[Cu(L²)(NO₃)₂][Cu(L²)](NO₃)₂ ( 2 ) [L² = dibenzyl‐5, 16‐dimethyl‐2, 6, 13, 17‐tetraazatricyclo(14, 4, 0^1.18,0^7.12)docosane] were synthesized and characterized by single crystal X‐ray analyses. In these constrained macrocycles, the central copper(II) atoms are in a tetragonally distorted octahedral environment with four nitrogen atoms of the macrocyclic ligands in equatorial positions and oxygen atoms from either water molecules or nitrato groups in axial positions. The macrocyclic ligands in both complexes adopt the most stable trans‐III conformation. The Cu–N distances [1.999(7)–2.095(7) Å] are typical for such complexes, but the axial ligands are weakly coordinating Cu–OH₂ bonds [2.693(3) Å] and Cu–ONO₂ bonds [2.873(7) Å] due to the combination of the pseudo Jahn–Teller effect and strong in‐plane ligand field. The crystals are stabilized by a three‐dimensional network by hydrogen bonds that are formed among the secondary nitrogen hydrogen atoms, oxygen atoms of water molecules, fluorine atoms of BF₄^–, and oxygen atoms of NO₃^–. The electronic absorption and IR spectroscopic properties are also discussed.     

Temperature effects on 13C n.m.r. chemical shifts of normal alkanes and some line r and branched 1-alkenes

¹³C n.m.r. chemical shifts of a number of 1,1-disubstituted ethylenes are presented. Moreover, effects of changing temperatures on the ¹³C n.m.r. chemical shifts of some of these compounds as well as of three normal alkanes are given. These variations in chemical shifts are attributed to varying amounts of sterically induced shifts in the different conformational equilibria. In addition to the well-known 1,4 interaction between two alkyl groups shielding effects on the carbon atoms of the connecting bonds are also proposed. No definite explanation of this effect is presented at this time. It is further shown that no simple correlations exist between ¹³C n.m.r. chemical shifts and calculated total charge densities at this level. Instead, the experimental results in 1-alkenes are rationalized by assuming a linear dependence of the ¹³C n.m.r. chemical shifts of C-1 and C-2 via rehybridizations on changes in bond angles for small skeletal deformations caused by steric interactions. These changes in geometries, as well as conformational energies in three 1-alkenes, were calculated by means of VFF calculations. Finally. upfield shifts for both C-2 and C-4 are proposed for those conformations of 1-alkenes in which the C-3? C-4 group interacts with the p_z-orbital of C-2.     

Linear electric field (LEF) effects in 13C NMR. Some model calculations on 5-chloro-1-pentene

The usefulness and some of the limitations of the linear electric field (LEF) effect in ¹³C NMR are illustrated by means of model calculations on the ¹³C NMR chemical shifts of C-1 and C-2 in 5-chloro-1-pentene in nine different conformations. Two different concepts are used in order to calculate the electric fields near C-1 and C-2 caused by the C-5? Cl dipole. It is also demonstrated that, when using charges calculated by CNDO/2, the influences of the hydrogen atoms at C-5 cannot be neglected. The use of the dipole–dipole interaction formula is advocated. The consequences of taking into account the additional contributions of the vinylic bonds to the accumulated charges at C-1 and C-2 are described. The results with the dipole–dipole formula show that the same signs and similar magnitudes of the LEF effects are calculated in seven out of nine conformations of 5-chloro-1-pentene. This reduces the LEF to a means of confirming, rather than deducing, conformational equilibria in acylic flexible compounds. The usefulness of some recently published applications of the LEF concept to explain some short range substituent effects is critically discussed, mainly in view of the inhomogeneities of the calculated electric fields.     

50 Years of Hydrogen Bond Theory

The “hydrogen bond” or “hydrogen bridge” concept has proved to be one of the most useful structural concepts in modern science. The properties of substances containing hydrogen bonds depend on the strength, symmetry, and polarity of these bonds. These characteristics, in turn, are related to the effective electronegativities of the bridgehead atoms, the distance between these atoms, and the degree of coupling with other hydrogen bonds. Symmetrical hydrogen bonds exist in the FHF^? and H₅O ions and in some acidic compounds. Coupled hydrogen bond systems exist, for example, in ice, liquid water, hydroquinone clathrates, starch, cellulose, polypeptides, nucleic acids, KH₂PO₄, and silicate hydrates. It is suggested that systems of coupled, nearly symmetrical, hydrogen bonds should be interesting subjects of further research.     

A novel tubular hydrogen‐bond pattern in a new diazaphosphole oxide: a combination of X‐ray crystallography and theoretical study of hydrogen bonds

In the structure of 2‐(4‐chloroanilino)‐1,3,2λ⁴‐diazaphosphol‐2‐one, C₁₂H₁₁ClN₃OP, each molecule is connected with four neighbouring molecules through (N—H)₂…O hydrogen bonds. These hydrogen bonds form a tubular arrangement along the [001] direction built from R ³₃(12) and R ₄³(14) hydrogen‐bond ring motifs, combined with a C (4) chain motif. The hole constructed in the tubular architecture includes a 12‐atom arrangement (three P, three N, three O and three H atoms) belonging to three adjacent molecules hydrogen bonded to each other. One of the N—H groups of the diazaphosphole ring, not co‐operating in classical hydrogen bonding, takes part in an N—H…π interaction. This interaction occurs within the tubular array and does not change the dimension of the hydrogen‐bond pattern. The energies of the N—H…O and N—H…π hydrogen bonds were studied by NBO (natural bond orbital) analysis, using the experimental hydrogen‐bonded cluster of molecules as the input file for the chemical calculations. In the ¹H NMR experiment, the nitrogen‐bound proton of the diazaphosphole ring has a high value of 17.2 Hz for the ²J _H–P coupling constant.     

Mass spectra and stereochemistry of alkylsubstituted 2,2-diphenyl-1,3-dioxa-2-germacyclohexanes

The correlations between electron impact induced formation of fragment [M ? C₆H₆]⁺˙ from alkyl-substituted 2,2-diphenyl-1,3-dioxa-2-germacyclohexane (1) and the peculiarities of the molecular structures were found. Benzene elimination is regiospecific and stereoselective, resulting from the abstraction of an axial phenyl group and a hydrogen atom from the C-4 or C-6 position of the ring.     

Directionality of Dihydrogen Bonds: The Role of Transition Metal Atoms

A theoretical study on two series of electron‐rich group 8 hydrides is carried out to evaluate involvement of the transition metal in dihydrogen bonding. To this end, the structural and electronic parameters are computed at the DFT/B3PW91 level for hydrogen‐bonded adducts of [(PP₃)MH₂] and [Cp*MH(dppe)] (M=Fe, Ru, Os; PP₃=κ⁴‐P(CH₂CH₂PPh₂)₃, dppe= κ²‐Ph₂PCH₂CH₂PPh₂) with CF₃CH₂OH (TFE) as proton donor. The results are compared with those of adduct [Cp₂NbH₃] ? TFE featuring a “pure” dihydrogen bond, and classical hydrogen bonds in pyridine ? TFE and Me₃N ? TFE. Deviation of the H ??? H? A fragment from linearity is shown to originate from the metal participation in dihydrogen bonding. The latter is confirmed by the electronic parameters obtained by NBO and AIM analysis. Considered together, orbital interaction energies and hydrogen bond ellipticity are salient indicators of this effect and allow the MH ??? HA interaction to be described as a bifurcate hydrogen bond. The impact of the M ??? HA interaction is shown to increase on descending the group, and this explains the experimental trends in mechanisms of proton‐transfer reactions via MH ??? HA intermediates. Strengthening of the M ??? H interaction in the case of electron‐rich 5d metal hydrides leads to direct proton transfer to the metal atom.     

Elimination of water from the molecular ion of cycloheptanol

Under electron impact cycloheptanol decomposes by four fragmentation paths: (1) α-cleavage with subsequent losses of C¹-C⁵ fragments, (2) elimination of water, (3) loss of the hydrogen atom from C-1 and (4) loss of the hydroxyl group. The mechanism of water elimination was investigated by means of deuterium labelling. 1,4-Elimination of water predominates in cycloheptanol, with the stereospecific cis-1,3-elimination also being operative. The loss of water is preceded by extensive exchange of the hydroxyl hydrogen with those of the ring. This is attributed to a very facile transannular interaction of the hydroxyl group with the C-3 to C-6 positions that are made accessible due to conformational properties of the 7-membered ring. A kinetic model is proposed, describing migrations of the ring hydrogen atoms.     

Chemical Reactivity of Supported ZnO Clusters: Undercoordinated Zinc and Oxygen Atoms as Active Sites

The growth of ZnO clusters supported by ZnO-bilayers on Ag(111) and the interaction of these oxide nanostructures with water have been studied by a multi-technique approach combining temperature-dependent infrared reflection absorption spectroscopy (IRRAS), grazing-emission X-ray photoelectron spectroscopy, and density functional theory calculations. Our results reveal that the ZnO bilayers exhibiting graphite-like structure are chemically inactive for water dissociation, whereas small ZnO clusters formed on top of these well-defined, yet chemically passive supports show extremely high reactivity - water is dissociated without an apparent activation barrier. Systematic isotopic substitution experiments using H₂¹⁶O/D₂¹⁶O/D₂¹⁸O allow identification of various types of acidic hydroxyl groups. We demonstrate that a reliable characterization of these OH-species is possible via co-adsorption of CO, which leads to a red shift of the OD frequency due to the weak interaction via hydrogen bonding. The theoretical results provide atomic-level insight into the surface structure and chemical activity of the supported ZnO clusters and allow identification of the presence of under-coordinated Zn and O atoms at the edges and corners of the ZnO clusters as the active sites for H₂O dissociation.     

Displacement of metal atoms from salts by hydrogen and the role of this reaction in chain processes

The interaction of hydrogen atoms with a variety of alkali metal and alkaline-earth metal salts results not only in the recombination of these atoms but also in the displacement, into the gas phase, of free radicals (CaCl^·(A ¹ P _1/2, B ² S ⁺) and CaF^·(A ² P)) and metal atoms, including their excited species, which are detected spectroscopically. Transmission spectra indicate that the NaCl surface undergoes metallization when treated with a high-frequency discharge and a rarefied hydrogen flame. Combustion is affected by the gas-phase hydrogen atoms involved in the chain reaction and by the varying composition and properties of the surface. The concentration of Na atoms over the NaCl surface at 770 K is 10⁹?10¹¹ cm^?3 in a stream of H atoms at 1 Torr and in the 2H₂ + O₂ flame at 4 Torr. The concentration of sodium atoms in the ² P _3/2 and ² P _1/2 excited states is ～5 × 10⁶?5 × 10⁸ cm^?3. The role of the discovered reactions in combustion, pyrolysis, and plasma chemistry is discussed.     

Long-range interaction between 1s and 2s or 2p hydrogen atoms

Long-range interaction energy between two hydrogen atoms has been computed in the second order of the perturbation theory. All states of the system arising when one of the atoms is in the 1s and the other in the 2s or 2p state have been considered. The energy represented by a series expansion in inverse powers of the internuclear distance, R, has been computed up to the terms in R^?8. The results are believed to give reliable interaction energies for R > 15 a.u. Accurate interaction energy for two ground-state hydrogen atoms has also been obtained up to the terms in R^?10. Results for the B′ ¹∑ state are employed to discuss the experimental ground-state dissociation energy of H₂, D₂, and HD. For H₂ all values of the dissociation energy obtained from various experimental absorption limits, by using the computed potential energy curve to separate off the effect of rotation, are shown to be satisfactorily consistent. The resulting total energy of H₂ is, however, higher than the most accurate theoretical value.     

Chemistry of O‐ and H‐Containing Species on the (001) Surface of Anatase TiO2: A DFT Study

The chemistry of oxygen, hydrogen, water, and other species containing both oxygen and hydrogen atoms on the anatase TiO₂ (001) surface is investigated by DFT. The adsorption energy of atoms and radicals depends appreciably on the position and mode of adsorption, and on the coverage. Molecular hydrogen and oxygen interact weakly with the clean surface. However, H₂O dissociates spontaneously to give two nonidentical hydroxyl groups, and this provides a model for hydroxylation of TiO₂ surfaces by water. The mobility of the hydroxyl groups created by water splitting is initially impeded by a diffusion barrier close to 1 eV. The O₂ adsorption energy increases significantly in the presence of H atoms. Hydroperoxy (OOH) formation is feasible if at least two H atoms are present in the direct vicinity of O₂. In the adsorbed OOH, the O? O bond is considerably lengthened and thus weakened.