Infrared spectroscopic ellipsometry of n-alkylthiol (C5-C18) self-assembled monolayers on gold

The infrared spectroscopic ellipsometry (IRSE) of n-alkylthiol (CH3(CH2)xSH, x = 4, 6, 7, 8, 10, 13, 15, and 17, self-assembled monolayers (SAMs), with 5-18 carbon atoms (C5-C18), grown on gold-coated Si(100) substrates) was investigated at room temperature. The C-H stretching vibrations could be resolved even for pentathiol, the shortest chain studied. The symmetric and asymmetric stretching vibrations of the CH2 groups are located at about 2850 and 2920 cm(-1), and those of CH3 are at about 2877 and 2962 cm(-1), respectively; they show a slight shift with the number of CH2 units. In addition, Fermi resonance of the symmetric CH3 stretching vibration at 2940 cm(-1) appears with decreasing chain length due to weak coupling with the asymmetric CH2 stretching vibration. The "odd-even effect" of the n-alkylthiol SAMs with varying CH2 units could be distinguished by the two interactive IRSE parameters. The relative ellipsometric spectra for the four longest chains could be reproduced quite well by using a Lorentz multioscillator model with a three-phase optical model (air/SAMs/gold). On the basis of the theoretical calculations, the vibrational strength of these oscillators is very weak, its magnitude being 10(-4)-10(-5). The full width at half-maximum (fwhm) of the peaks varies from 7 to 33 cm(-1). Moreover, the intensity of the C-H vibrations increases with the number of methylene units, due to strong lateral interactions and ordering effects occurring for longer chains.     

Quantitative chemical composition of thin films with infrared spectroscopic ellipsometry: application to hydrated oxide films on aluminium

A method to quantify the composition of thin films using infrared spectroscopic ellipsometry (IRSE), supplemented by visible spectroscopic ellipsometry (VISSE), is proposed. Because ellipsometry measures the thickness and optical constants of a surface layer simultaneously, the absorption coefficient of the film as a function of wavelength can be obtained. Using values of the absorption coefficients for the pure components of the film, the percentages (mol.% or wt.%) of each component in the film can be calculated. The method is demonstrated in a study of the hydration of oxide films on electropolished aluminium and the anodically formed barrier oxide film. The IRSE technique shows that hydration of the films by immersion in boiling water results in the conversion of aluminium oxide to pseudoboehmite. Copyright © 2003 John Wiley & Sons, Ltd.     

Isostructural self-assembled monolayers. 2. Methyl 1-(3-mercaptopropyl)-oligo(ethylene oxide)s

The structural order and ordering conditions of the self-assembled monolayers (SAMs) of HSCH2CH2CH2O(EO)xCH3, where EO = CH2CH2O and x = 3-9, on polycrystalline gold (Au) were determined by reflection-absorption infrared spectroscopy (RAIRS), spectroscopic ellipsometry (SE), and electrochemical impedance spectroscopy. For x = 5-7, RAIRS and SE data show that the oligo(ethylene oxide) [OEO] segments adopt the near single phase, 7/2 helical conformation of the folded-chain crystal polymorph of crystalline poly(ethylene oxide), oriented normal to the substrate. These SAMs exhibit OEO segment structure and orientation identical to that found in a previous isostructural series [HS(CH2CH2O)6-8C18H37 SAMs. Vanderah, D. J., et al. Langmuir 2003, 19, 3752] and are anisotropic films for surface science metrology where structure is constant and thickness increases in 0.30 nm increments. In addition, this is the first example of OEO SAMs to attain this highly ordered, helical conformation where the (EO)x segment is separated from the Au-sulfur headgroup by a polymethylene chain. For x = 4, 8, and 9, the SAMs are largely helical but show evidence of nonhelical conformations and establish the upper and lower limits of the isostructural set. For x = 3, the SAMs are largely disordered containing some all-trans conformation. SAM order as a function of immersion time from 100% water and 95% ethanol indicates that the HSCH2CH2CH2O(EO)5-7CH3 SAMs order faster and under a wider range of conditions than omega-alkyl 1-thiaolio(ethylene oxide) [HS(EO)xCH3] SAMs, reported earlier (Vanderah, D. J., et al. Langmuir 2002, 18, 4674 and Vanderah, D. J., et al. Langmuir 2003, 19, 2612).     

Infrared optical properties and AFM of spin-cast chitosan films chemically modified with 1,2 Epoxy-3-phenoxy-propane

Chemical modification of spin-cast chitosan films has been performed. This modification involves the attachment of 1,2 Epoxy-3-phenoxy-propane, commonly known as glycidyl phenyl ether (GPE), to the amine group of the chitosan molecule. Optical properties of modified films have been determined in the infrared region of the spectrum using spectroscopic ellipsometry, and are reported in this paper. Special attention is paid to the infrared region where the index of refraction and extinction coefficients from 750 to 4000 cm(-1) were determined. Difference plots of IR optical data before and after chemical modification were generated to confirm that modification had occurred. Optical modeling of infrared spectroscopic ellipsometry (IRSE) data with respect to chemical bond vibrations has also been performed. This modeling involved curve fitting of resonant chemical bond absorptions using Lorentz oscillators. These oscillator models allow for comparison of modified chitosan to unmodified chitosan. The purpose of this research was to determine infrared optical constants of chemically modified chitosan films This work shows that surface chemistry of biomaterials can be studied quite sensitively with spectroscopy ellipsometry, detecting as little as 100 ng/cm(2) of GPE.     

In situ monitoring of the etching of thin silicon oxide films in diluted NH4F by IR ellipsometry

Infrared spectroscopic ellipsometry (IRSE) was applied to monitor the etching process of electrochemically formed silicon oxides (11.5 and 3.8 nm thick films) in diluted NH₄F solution. The optical properties of the amorphous silicon oxide film and the time dependent thicknesses of the oxide films during the etching process were deduced from quantitative evaluations of IRSE spectra.     

Mixed self-assembled monolayers (SAMs) consisting of methoxy-tri(ethylene glycol)-terminated and alkyl-terminated dimethylchlorosilanes control the non-specific adsorption of proteins at oxidic surfaces

Monolayers from the newly synthesized compound methoxy-tri(ethylene glycol)-undecenyldimethylchlorosilane (CH3O(CH2CH2O)3(CH2)11Si(CH3)2Cl, MeO(EG)3C11DMS) and dodecyldimethylchlorosilane (DDMS), both pure and mixed, were prepared by self-assembly from organic solution in the presence of an organic base. The films obtained were characterized by advancing and receding contact angle measurements and ellipsometry to confirm the formation of self-assembled monolayers (SAMs). The resulting data on the covalently attached dimethylsilanes were compared to known oligo(ethylene glycol) (OEG)-terminated SAM systems based on terminal alkenes, thiolates or trihydrolyzable silanes. The composition of the mixed SAMs was found to depend directly and linearly on the composition of the silanization solution. Enhanced protein repellent properties were found for the SAMs using a variety of proteins, including the Ras Binding Domain (RBD), a protein with high relevance for cancer diagnostics. Roughly a RBD protein monolayer amount was adsorbed to silicon oxide surfaces silanized with DDMS or non-silanized silicon wafers, and in contrast, no RBD was adsorbed to surfaces silanized with MeO(EG)3C11DMS or to mixed monolayers consisting of DDMS and MeO(EG)3C11DMS if the content of OEG-silane overcame a critical content of X(EG) approximately 0.9.     

In-situ characterization of self-assembled monolayers of water-soluble oligo(ethylene oxide) compounds

In-situ spectroscopic ellipsometry (SE) was utilized to examine the formation of the self-assembled monolayers (SAMs) of the water-soluble oligo(ethylene oxide) [OEO] disulfide [S(CH(2)CH(2)O)(6)CH(3)](2) {[S(EO)(6)](2)} and two analogous thiols - HS(CH(2)CH(2)O)(6)CH(3) {(EO)(6)} and HS(CH(2))(3)O(CH(2)CH(2)O)(5)CH(3) {C(3)(EO)(5)} - on Au from aqueous solutions. Kinetic data for all compounds follow simple Langmuirian models with the disulfide reaching a self-limiting final state (d=1.2nm) more rapidly than the full coverage final states of the thiol analogs (d=2.0nm). The in-situ ellipsometric thicknesses of all compounds were found to be nearly identical to earlier ex-situ ellipsometric measurements suggesting similar surface coverages and structural models in air and under water. Exposure to bovine serum albumin (BSA) shows the self-limiting (d=1.2nm) [S(EO)(6)](2) SAMs to be the most highly protein resistant surfaces relative to bare Au and completely-formed SAMs of the two analogous thiols and octadecanethiol (ODT). When challenged with up to near physiological levels of BSA (2.5mg/mL), protein adsorption on the final state [S(EO)(6)](2) SAM was only 3% of that which adsorbed to the bare Au and ODT SAMs.     

Interfacial structure in thin water layers formed by forced dewetting on self-assembled monolayers of omega-terminated alkanethiols on Ag

A method for the spectroscopic characterization of interfacial fluid molecular structure near solid substrates is reported. The thickness and interfacial molecular structure of residual ultrathin D20 films remaining after forced dewetting on alkanethiolate self-assembled monolayers (SAMs) of 11 1-mercaptoundecanoic acid (11-MUA), 11-mercaptoundecanol (11-MUD), and undecanethiol (UDT) on Ag are investigated using ellipsometry and surface Raman spectroscopy. The residual film thickness left after withdrawal is greater on hydrophilic SAMs than on hydrophobic SAMs. This behavior is rationalized on the basis of differing degrees of fluid slip within the interfacial region due to different interfacial molecular structure. The v(O-D) regions of surface Raman spectra clearly indicate unique interfacial molecular properties within these films that differ from bulk D20. Although the residual films are created by shear forces and Marangoni flow at the three-phase line during the forced dewetting process, the nature of the films sampled optically must also be considered from the standpoint of thin film stability after dewetting. Thus, the resulting D20 films exist in vastly different morphologies depending on the nature of the water-SAM interactions. Residual D20 is proposed to exist as small nanodroplets on UDT surfaces due tospontaneous rupture of the film after dewetting. In contrast, on 11-MUD and 11-MUA surfaces, these films exist in a metastable state that retains their conformal nature on the underlying modified surface. Analysis of the peak intensity ratios of the so-called "ice-like" to "liquid-like" v(O-D) modes suggests more ice-like D20 character near 11-MUD surfaces, but more liquid-like character near 11-MUA and UDT surfaces. The creation of residual ultrathin films by forced dewetting is thus demonstrated to be a powerful method for characterizing interfacial molecular structure of fluids near a solid substrate under ambient conditions of temperature and pressure.     

Labelling and binding of poly-( -lysine) to functionalised gold surfaces. Combined FT-IRRAS and XPS characterisation

We compare herein the interfacial reactivity of self-assembled monolayers (SAMs) of 11-mercaptoundecanoic acid (MUA), 1-undecanethiol (UDT) and 11-mercaptoundecanol (MUD) on gold surfaces towards aqueous solutions of poly-( -lysine) (PL). Liquid-phase labelling of PL with the alkyne dicobalt hexacarbonyl cluster 1 combined with analysis of the substrates by Fourier transform infrared reflection–absorption spectroscopy (FT-IRRAS) and X-ray photoelectron spectroscopy (XPS) revealed that irreversible binding of PL occurred in all cases. However, the mechanism of binding involved differed markedly from one monolayer to the other. The main mode of interaction of PL to MUA SAM was of electrostatic nature between the terminal carboxylate of MUA and the ammonium groups of PL. For a similar number of bound thiolate molecules, the UDT adsorbed layer was found less continuous than the MUA one, allowing a higher fraction of PL to directly bind to the gold surface. As for MUD, very little thiolate molecules were adsorbed, leaving bare gold surface areas for non specific adsorption of PL.     

Adsorption/desorption of mono- and diblock copolymers on surfaces using specific hydrogen bonding interactions

Diblock copolymers containing recognition units designed to participate in specific three-point hydrogen bonding were adsorbed onto modified gold surfaces. Self-assembled monolayers (SAMs) containing complementary recognition units were used to direct the adsorption process. The polymer-modified surfaces obtained were characterized using X-ray photoelectron spectroscopy, water contact angle, and ellipsometry. The role of individual block lengths on the adsorption process was followed by observing frequency changes of thymine-SAM-modified quartz crystal microbalance chips during adsorption of diamidopyridine-functionalized polymers from a nonpolar solvent. The renewable nature of these recognition unit functionalized surfaces was demonstrated by reversible binding of polymers. Adsorption onto fresh surfaces, followed by desorption and subsequent readsorption of monoblock and diblock copolymers was also investigated.     

Systematic control of the packing density of self-assembled monolayers using bidentate and tridentate chelating alkanethiols

The structural and interfacial properties of self-assembled monolayers (SAMs) on gold derived from the adsorption of a series of 1,1,1-tris(mercaptomethyl)alkanes (i.e., CH3(CH2)mC[CH2SH]3, where m = 9, 11, 13, 15) were investigated. The new SAMs, which possess uniformly low densities of alkyl chains, were characterized by ellipsometry, contact angle goniometry, and polarization modulation infrared reflection absorption spectroscopy. Additional analysis of the SAMs by X-ray photoelectron spectroscopy permitted a direct calculation of the packing densities of the SAMs on gold. The results as a whole, when compared to those obtained on SAMs generated from normal alkanethiols (CH3(CH2)m+2SH), 2-alkylpropane-1,3-dithiols (CH3(CH2)mCH[CH2SH]2), and 2-alkyl-2-methylpropane-1,3-dithiols (CH3(CH2)mC(CH3)[CH2SH]2) having analogous chain lengths, demonstrate that the 1,1,1-tris(mercaptomethyl)alkanes afford SAMs with alkyl chains having the lowest packing density and least conformational order.     

Length dependence of charge transport in nanoscopic molecular junctions incorporating a series of rigid thiol-terminated norbornylogs

Four tetrathiol-terminated norbornane homologues were synthesized and self-assembled monolayers (SAMs) of these molecules were formed on Au via adsorption from CH2Cl2. SAMs were characterized structurally via spectroscopic ellipsometry (SE), reflection-absorption infrared spectroscopy (RAIRS), Rutherford backscattering spectrometry (RBS), and X-ray photoelectron spectroscopy (XPS). Results of these analyses show that the rigid norbornylogs form monolayers that have a surface coverage slightly lower than that of alkanethiols, and that they exhibit a nonmonotonic dependence of film thickness on molecular length. Nanoscale molecular junctions incorporating these SAMs were formed and characterized electrically using conducting probe atomic force microscopy (CP-AFM). The resistances of these junctions scale exponentially with the contour length of the molecules, with beta = 0.9 A(-1), consistent with a nonresonant tunneling mechanism. Further, the resistance of norbornyl SAMs correlates well with the resistance of alkanedithiol SAMs of similar length, suggesting that the norbornyl molecules form sulfur-metal bonds on both ends of the junction.     

Electrochemical preparation and structural characterization of Co thin films and their anomalous IR properties

Nanometer scale cobalt thin films of different structures and thicknesses supported on glassy carbon were prepared by electrochemical deposition under cyclic voltammetric conditions (denoted nm-Co/GC(n)). The thickness of Co thin films was altered systematically by varying the number (n) of potential cycling within a defined potential range in electrodeposition. Electrochemical in situ scanning tunneling microscopy (STM) and ex situ scanning electron microscopy (SEM) were employed to characterize the surface structure of Co thin films. It has been illustrated that the Co thin films were uniformly composed of Co nanoparticles, whose structure and size varied with increasing n. The structure of nanoparticles inside the Co thin films underwent a transition from bearded nanoparticles to multiform nanoparticles and finally to hexagonal nanosheets, accompanying with an increase of average size. In situ FTIR reflection spectroscopic studies employing CO adsorption as probe reaction revealed that the Co thin films all exhibited anomalous IR properties; that is, along with their different nanostructures they presented abnormal IR effects, Fano-like IR effects, and surface-enhanced IR absorption effects. CO adsorbed on Co thin films dominated by bearded nanoparticles yielded abnormal IR absorption bands; that is, the direction of the bands is inverted completely, with enhanced intensity in comparison with those of CO adsorbed on a bulk Co electrode. The enhancement of abnormal IR absorption has reached a maximal value of 26.2 on the nm-Co/GC(2) electrode. Fano-like IR features, which describe the bipolar IR bands with their positive-going peak on the low wavenumbers side, were observed in cases of CO adsorbed on Co thin films composed mainly of multiform nanoparticles, typically on the nm-Co/GC(8) electrode. IR features were finally changed into surface-enhanced IR absorption as CO adsorbed on the nm-Co/GC(30) electrode, on which the Co thin film is dominated by Co hexagonal nanosheets.     

Formation and structure of self-assembled monolayers of alkanethiolates on palladium

The adsorption of n-alkanethiols onto polycrystalline thin films of palladium containing a strong (111) texture produces well-organized, self-assembled monolayers. The organization of the alkane chains in the monolayer and the nature of the bonding between the palladium and the thiol were studied by contact angle measurements, optical ellipsometry, reflection absorption infrared spectroscopy (RAIRS), and X-ray photoelectron spectroscopy (XPS). The XPS data reveals that a compound palladium-sulfide interphase is present at the surface of the palladium film. The RAIR spectra, ellipsometry data, and wetting properties show that the palladium-sulfide phase is terminated with an organized, methyl-terminated monolayer of alkanethiolates. The local molecular environment of the alkane chains transitions from a conformationally disordered, liquidlike state to a mostly all-trans, crystalline-like structure with increasing chain length (n = 8-26). The intensities and dichroism of the methylene and methyl stretching modes support a model for the average orientation of an ensemble of all-trans-conformer chains with a tilt angle of approximately 14-18 degrees with respect to the surface normal and a twist angle of the CCC plane relative to the tilt plane of approximately 45 degrees. The SAMs are stable in air, although the sulfur present at the surface oxidizes in air over a period of 2-5 days at room temperature. The differences in chain organization between SAMs formed by microcontact printing and by solution deposition are also examined by RAIRS and XPS.     

Spectroscopic Ellipsometry for Characterization of Thin Films of Polymer Blends

Morphology, composition, miscibility, interdiffusion, and interactions at interfaces are important quantities of polymer blends. Many of these parameters can be probed with spectroscopic ellipsometry. Ellipsometry in the visible spectral range is very suitable for determination of thicknesses and the high frequency refractive indices of thin organic films. However the spectral contrast is low for many polymers in comparison to infrared spectroscopic ellipsometry (IRSE) where specific contributions of the molecular vibrations are probed. In the presented study the infrared optical constants of a double layer (206.6 nm in total) of poly(n-butyl methacrylate) (PnBMA) and poly(vinyl chloride) (PVC) and of the films of the single compounds have been determined with optical simulations using layer models. The multiple layer model served for simulation of the ellipsometric spectra taken after an annealing induced mixing process in a polymeric double layer. The ellipsometric spectra of a not completely mixed sample could be fitted in a three-layer model, in which a mixed interphase in between the two layers of the polymers is formed due to interdiffusion.     

Stimuli-responsive mixed grafted polymer films with gradually changing properties: direct determination of chemical composition

Infrared spectroscopic ellipsometry (IRSE) and visible monochromatic ellipsometry (VISE) approaches were applied to investigate the chemical structure and thickness of ultrathin polymer films. Mixed polystyrene-poly(2-vinylpyridine) and polystyrene-poly(tert-butyl acrylate) polymer grafted films (mixed brushes) with gradually changing composition (1D gradient mixed brush) along the sample were prepared on a temperature gradient stage via two subsequent "grafting to" reactions. The films were characterized by high-precision mapping VISE at a single wavelength (632.8 nm) and IRSE. The set of 1D IRSE spectra of the polymer brush films obtained by mapping the 1D gradient brush were used to estimate the thickness and the local composition of the film and to construct the 1D map of the film in terms of the chemical composition of the brush. The results were compared with the data obtained using monochromatic ellipsometry where the brush composition was estimated from the results of two subsequent measurements followed each grafting step. The measurements of the brush thickness and composition with both methods were found to be in gratifying agreement. The results demonstrate the high potential of IRSE methods for the one-step characterization (by thickness and chemical composition) of ultrathin polymer films of complex composition.     

Hemoglobin on phosphonic acid terminated self-assembled monolayers at a gold electrode: immobilization, direct electrochemistry, and electrocatalysis

Phosphonic acid (--PO(3)H(2)) terminated self-assembled monolayers (SAMs) on a gold surface were used as a functional interface to immobilize hemoglobin (Hb). In situ surface-enhanced infrared absorption spectroscopy (SEIRAS) measurements show that Hb immobilization is a sluggish process due to formation of multilayer Hb structures on the PO(3)H(2)-terminated SAMs, as revealed by ellipsometry, atomic force microscopy (AFM), and cyclic voltammetry (CV). In the multilayered Hb film, the innermost Hb molecules can directly exchange electrons with the electrode, whereas Hb beyond this layer communicates electronically with the electrode via protein-protein electron exchange. In addition, electrochemical measurements indicate that immobilization of Hb on the PO(3)H(2)-terminated SAMs is not driven by the electrostatic interaction, but likely by hydrogen-bonding interaction. The immobilized Hb molecules show excellent bioelectrocatalytic activity towards hydrogen peroxide, that is, the PO(3)H(2)-terminated SAMs are promising for construction of third-generation biosensors.     

Labelling and binding of poly-(L-lysine) to functionalised gold surfaces. Combined FT-IRRAS and XPS characterisation

We compare herein the interfacial reactivity of self-assembled monolayers (SAMs) of 11-mercaptoundecanoic acid (MUA), 1-undecanethiol (UDT) and 11-mercaptoundecanol (MUD) on gold surfaces towards aqueous solutions of poly-(L-lysine) (PL). Liquid-phase labelling of PL with the alkyne dicobalt hexacarbonyl cluster 1 combined with analysis of the substrates by Fourier transform infrared reflection-absorption spectroscopy (FT-IRRAS) and X-ray photoelectron spectroscopy (XPS) revealed that irreversible binding of PL occurred in all cases. However, the mechanism of binding involved differed markedly from one monolayer to the other. The main mode of interaction of PL to MUA SAM was of electrostatic nature between the terminal carboxylate of MUA and the ammonium groups of PL. For a similar number of bound thiolate molecules, the UDT adsorbed layer was found less continuous than the MUA one, allowing a higher fraction of PL to directly bind to the gold surface. As for MUD, very little thiolate molecules were adsorbed, leaving bare gold surface areas for non specific adsorption of PL.     

Synthesis,structural analysis,and self-assembly of phenylene ethynylene oligomers and their ?F, ?CF3, and ?CH3 substituted derivatives

Oligomers consisting of aromatic building blocks separated by alkynyl units were synthesized by Sonogashira cross-coupling of aryl halides with terminal acetylenes. Strong electron acceptors such as  F and  CF₃ and weak electron donors like  CH₃ were placed as substituents on one of the benzene rings. Acetyl-protected sulfhydryl groups were attached to one end of these molecules to promote their self-organization on gold surfaces. The electron-transport properties of such self-assembled monolayers (SAMs) are highly sensitive to the local order of the molecules in the solid state. Single crystals were analyzed by X-ray diffraction experiments that revealed structural details that could lead to a better understanding of the electron-transport properties. The unsymmetrical substitution of the aromatic rings by electron-active groups in the ortho-, meta-, or para positions resulted in changes of such molecular parameters as bonding and torsion angles and planarity. These parameters, in turn, can affect the angle of the molecular attachment to a gold substrate and the density of the resulting SAMs. Patterned SAMs of some of these molecules and comparison alkane thiols were obtained on gold by microcontact printing or flooding. The SAM thickness was determined by spectroscopic ellipsometry. Surface potential differences between adjacent SAMs or between SAMs and the gold substrate were measured by scanning surface potential microscopy under ambient conditions. © 2003 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 42: 541–550, 2004     

Infrared-optical properties of vapour-deposited metal films

Spectroscopic infrared ellipsometry was applied to determine the optical constants of thin metal layers deposited on dielectric substrates such as glass or CaF(2). The layers were produced by evaporating gold or silver in a vacuum, and the coverage, that is the deposited mass per area, was chosen in the range 80-1200 mg m(-2) for gold, which refers to thicknesses in the lower nanometer range; in the case of the specifically lighter silver, about half the coverage was applied. At low coverage a metal island structure is obtained, which gives rise to surface-enhanced infrared absorption (SEIRA). Depending on the coverage, the deposited films exhibit either dielectric or metallic optical properties. Atomic force microscopy and conductivity measurements complement the spectroscopic observation.