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1.
Electron capture dissociation (ECD) is well suited for the characterization of phosphoproteins, with which labile phosphate groups are generally preserved during the fragmentation process. However, the impact of phosphorylation on ECD fragmentation of intact proteins remains unclear. Here, we have performed a systematic investigation of the phosphorylation effect on ECD of intact proteins by comparing the ECD cleavages of mono-phosphorylated α-casein, multi-phosphorylated β-casein, and immunoaffinity-purified phosphorylated cardiac troponin I with those of their unphosphorylated counterparts, respectively. In contrast to phosphopeptides, phosphorylation has significantly reduced deleterious effects on the fragmentation of intact proteins during ECD. On a global scale, the fragmentation patterns are highly comparable between unphosphorylated and phosphorylated precursors under the same ECD conditions, despite a slight decrease in the number of fragment ions observed for the phosphorylated forms. On a local scale, single phosphorylation of intact proteins imposes minimal effects on fragmentation near the phosphorylation sites, but multiple phosphorylations in close proximity result in a significant reduction of ECD bond cleavages.
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2.
Electrophoretic analysis of phosphorylation of the yeast 20S proteasome   总被引:4,自引:0,他引:4  
The 26S proteasome complex, consisting of two multisubunit complexes, a 20S proteasome and a pair of 19S regulatory particles, plays a major role in the nonlysosomal degradation of intracellular proteins. The 20S proteasome was purified from yeast and separated by two-dimensional gel electrophoresis (2-DE). A total of 18 spots separated by 2-DE were identified as the 20S proteasome subunits by peptide mass fingerprinting with matrix assisted laser desorption/ionization-time of flight-mass spectrometry (MALDI-TOF-MS). The alpha2-, alpha4- and alpha7-subunits gave multiple spots, which converged into one spot for each subunit when treated with alkaline phosphatase. The difference of pI between phosphorylated and dephosphorylated spots and their reaction against anti-phosphotyrosine antibody suggested that the alpha2- and alpha4-subunits are phosphorylated either at Ser or at Thr residue, and the alpha7-subunit is phosphorylated at Tyr residue(s). These phosphorylated subunits were analyzed by electrospray ionization-quadrupole time of flight-tandem MS (ESI-QTOF-MS/MS) to deduce the phosphorylation sites. The 20S proteasome has three different protease activities: chymotrypsin-like, trypsin-like and peptidylglutamyl peptide-hydrolyzing activities. The phosphatase treatment increased K(m) value for chymotrypsin-like activity of the 20S proteasome, indicating that phosphorylation may play an important role in regulating the proteasome activity.  相似文献   

3.
Mass spectrometry has been shown in recent years to be a powerful tool to determine accurate molecular masses and sequences of peptides and proteins and post-translational modifications such as glycosylation, phosphorylation, and sulfation. For glycosylation, it has been increasingly recognized to be of pivotal importance to identify whether potential glycosylation sites are actually modified by glycans, because functions of proteins may be modulated or depend on the presence of glycans at specific sites. Several recent reports have established that mass spectrometric techniques such as matrix-assisted laser desorption/ionization or electrospray ionization mass spectrometry (MALDI-TOF or ESI-MS, respectively) with or without preceding HPLC and in combination with PNGase F treatment are suited to analyze whether consensus sequences for N-glycosylation are glycosylated or not. Here we report the mass spectrometric analysis of the six potential N-glycosylation sites of the neural cell adhesion molecule NCAM from adult mouse brain. Unmodified peptides and glycopeptides each carrying a single glycosylation site were generated from NCAM by AspN and trypsin treatment and submitted to reversed-phase HPLC with or without prior enzymatic release of N-glycans. The resulting peptides were analyzed by MALDI-TOF-MS. In addition, high-resolution Fourier transform–ion cyclotron resonance (MALDI-FTICR) mass spectrometry was performed after in-gel deglycosylation and subsequent trypsin digestion. By using these procedures all six consensus sequences were shown to be glycosylated; the observation of an unmodified peptide with the consensus sequence N-1 indicates only partial glycosylation at this site.Abbreviations amu atomic mass units - AspN endoproteinase AspN - CAM cell adhesion molecule - ESI electrospray ionization - FTICR Fourier transform–ion cyclotron resonance - IgSF immunoglobulin superfamily - MALDI-TOF matrix-assisted laser desorption ionization–time of flight - MS mass spectrometry - NCAM neural cell adhesion molecule - PNGase F peptide-N 4-(N-acetyl--glucosaminyl)asparagine amidase - PSA polysialic acid - TFA trifluoroacetic acid  相似文献   

4.
Different search programs were compared to judge their particular efficiency in protein identification. We established a human blood platelet protein map and identified tyrosine-phosphorylated proteins. The cytosolic fraction of human blood platelets was separated by two-dimensional polyacrylamide gel electrophoresis (2-D PAGE) and phosphorylated proteins were detected by Western blotting using anti-phosphotyrosine antibodies. Visualized protein spots were excised, digested with trypsin and analyzed by matrix assisted laser desorption/ionization-time of flight-mass spectrometry (MALDI-TOF-MS). The obtained mass fingerprint data sets have been analyzed using ProFound, MS-Fit and Mascot. For those protein spots with no significant search results MALDI post source decay (PSD) spectra have been acquired on the same sample. For automatic interpretation of these fragment ion spectra, the SEQUEST and Mascot algorithm were applied. Another approach for the identification of phosphorylated proteins is immunoprecipitation using an anti-phosphotyrosine antibody. A method for immunoprecipitation of tyrosine-phosphorylated peptides was optimized.  相似文献   

5.
Photochemical and thermochemical activation were used to prepare new -complexes of chromium, molybdenum and tungsten containing 2- and 4-coordinated methyl acrylate, methyl cynnamate, and dimethyl fumarate molecules. Geometric, electronic, and energetic parameters of the coordinated ester molecules were found and factors governing 2- and 4-coordination of the oxodiene system were revealed by nonempirical calculations. Monocarboxylic acid esters incorporated in the -complexes react with dialkyl hydrogen phosphites to give dialkyl acyl phosphites coordinated with the metal center and susceptible to oxidation the corresponding phosphates. In this case, the phosphorylation involves the OH-tautomer of dialkyl hydrogen phosphite. Coordinated dimethyl fumarate undergoes phosphorylation by two concurrent pathways, viz. transesterification or Pudovik reaction. In the latter case, fragmentation of the organometallic compound takes place.  相似文献   

6.
The synthesis has been performed of an analogue of the phospholipid platelet activation factor — 1-0-(alk-1-enyl)-2-acetyl-sn-glycero-3-phospho-N-(N-acetylglycylethanolamine). In concentrations of 10–7-10–6 M, the analogues so obtained inhibited the aggregation of human platelets stimulated by the phospholipid activation factor.Scientific-Research Institute of Biomedical Technology, USSR Ministry of Health, Moscow. Translated from Khimiya Prirodnykh Soedinenii, No. 3, pp. 325–330, May–June, 1990.  相似文献   

7.
Phagocytes such as neutrophils play a vital role in host defense against microbial pathogens. The anti-microbial function of neutrophils is based on the production of superoxide anion (O2•-), which generates other microbicidal reactive oxygen species (ROS) and release of antimicrobial peptides and proteins. The enzyme responsible for O2•- production is called the NADPH oxidase or respiratory burst oxidase. This multicomponent enzyme system is composed of two transmembrane proteins (p22phox and gp91phox, also called NOX2, which together form the cytochrome b558) and four cytosolic proteins (p47phox, p67phox, p40phox and a GTPase Rac1 or Rac2), which assemble at membrane sites upon cell activation. NADPH oxidase activation in phagocytes can be induced by a large number of soluble and particulate agents. This process is dependent on the phosphorylation of the cytosolic protein p47phox. p47phox is a 390 amino acids protein with several functional domains: one phox homology (PX) domain, two src homology 3 (SH3) domains, an auto-inhibitory region (AIR), a proline rich domain (PRR) and has several phosphorylated sites located between Ser303 and Ser379. In this review, we will describe the structure of p47phox, its phosphorylation and discuss how these events regulate NADPH oxidase activation.  相似文献   

8.
In this report, we demonstrate the application of Au nanoparticles in the electrochemical detection of protein phosphorylation. The method is based on the labeling of a specific phosphorylation event with Au nanoparticles, followed by electrochemical detection. The phosphorylation reaction is coupled with the biotinylation of the kinase substrate using a biotin-modified adenosine 5′-triphosphate [γ]-biotinyl-3,6,9-trioxaundecanediamine (ATP) as the co-substrate. When the phosphorylated and biotinylated kinase substrate is exposed to streptavidin-coated Au nanoparticles, the high affinity between the streptavidin and biotin resulted in the attachment of Au nanoparticles on the kinase substrate. The electrochemical response obtained from Au nanoparticles enables monitoring the activity of the kinase and its substrate, as well as the inhibition of small molecule inhibitors on protein phosphorylation. We determined the activity of Src non-receptor protein tyrosine kinase, p60c-Src and protein kinase A in combination with their highly specific substrate peptides Raytide™ EL and Kemptide, respectively. The detection limits for Raytide™ EL and Kemptide were determined as 5 and 10 μM, (S/N = 3), and the detection limits for the kinase activity of p60c-Src and protein kinase A (PKA) were determined as 5 and 10 U mL−1, (S/N = 3), respectively. Tyrosine kinase reactions were also performed in the presence of a well-defined inhibitor, 4-amino-5-(4-chlorophenyl)-7-(t-butyl) pyrazolo[3,4-d]pyrimidine (PP2), and its negative control molecule, 4-amino-7-phenylpyrazol[3,4-d] pyrimidine (PP3), which had no inhibition effect. Based on the dependency of Au nanoparticle signal on inhibitor concentration, IC50 value, half-maximal inhibition of the inhibitors was estimated. IC50 values of PP2, genistein and herbimycin A to p60c-Src were detected as 5 nM, 25 μM and 900 nM, respectively. The inhibition of PKA activity on Kemptide using ellagic acid was monitored with an IC50 of 3.5 μM. The performance of the biosensor was optimized including the kinase reaction, incubation with streptavidin-coated Au nanoparticles, and the small molecule inhibitors. Kinase peptide-modified electrochemical biosensors are promising candidates for cost-effective kinase activity and inhibitor screening assays.  相似文献   

9.
The states of supported vanadium and the nature of activation of ammonia adsorbed on vanadium sites of V x /Ti2 catalysts are studied by 51V NMR spectroscopy and diffuse-reflectance IR Fourier-transform (DRIFT) spectroscopy using cluster quantum chemical calculations of N3 adsorption. We employ the V x /Ti2 catalyst of two types: the monolayer catalyst in which vanadium is located on the surface of well-crystallized anatase and the catalyst in which vanadium embedded in the anatase lattice at a rather great depth. It is shown that ammonia is predominantly adsorbed on Lewis acid sites of the monolayer catalyst, whereas most of N3 adsorbed on the catalyst containing bulk vanadium is in the form of ammonium ions. Analysis of experimental and calculated data suggests that, in the monolayer catalyst, N3 molecules in the selective reduction of nitrogen oxides are activated on Lewis acid sites. Ammonia activation involves the dissociation of the N–H bond in a coordinated molecule, which results in the formation of the amide V–N2 group and a water molecule coordinated by a V5+ ion. It is likely that, in the case of the catalyst containing bulk vanadium, this reaction occurs with the predominant participation of ammonium ions.  相似文献   

10.
The complex of [Tb2(p-MOBA)6(PHEN)2] (p-MOBA=C8H7O3,p-methoxybenzoate; PHEN=C12H8N2, 1,10-phenanthroline) was prepared and characterized by elemental analysis and IR spectroscopy. The thermal behavior of Tb2(p-MOBA)6(PHEN)2 in a static air atmosphere was investigated by TG-DTG, DTA, SEM and IR techniques. By the kinetic method of processing thermal analysis data put forward by Malek et al., it is defined that the kinetic model for the first-step thermal decomposition is SB(m,n). The activation energy E for this step reaction is 140.92 kJ mol-1, the enthalpy of activation H is 136.06 kJ mol-1, the Gibbs free energy of activation G is 145.16 kJ mol-1, the entropy of activation S is -15.53 J mol-1, and the pre-exponential factor lnA is 29.26. The lifetime equation at mass loss of 10% was deduced as ln =-28.72+1.943·104/T by isothermal thermogravimetric analysis.  相似文献   

11.
The stereochemistry of catalytic phosphorylation of 1-(perfluoroalkyl)--(trialkylsilyl)alkan-1-ols with pentavalent phosphorus acid monochlorides (phosphonochloridates, methyl(phenyl)phosphinic chloride, and phosphorochloridates) was studied. The effects of the structures of alcohols and phosphorylating agents on the degree of the reaction diastereoselectivity were investigated. Methylphosphonochloridates were found to react most stereoselectively; the diastereoselectivity of the phosphorylation is independent of the donor or acceptor character of substituents at the phosphorus atom, being determined by their volumes. In the series of silylalkanols, the diastereoselectivity of the reaction the higher the closer the Si atom to the reactive site of the molecule, the larger the volume of the perfluoroalkyl substituent, and the more pronounced the electron-withdrawing properties of the substituents at the Si atom. A reaction mechanism is proposed that rationalizes the stereoselectivity of the reaction.Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 9, pp. 1930–1936, September, 2004.  相似文献   

12.
Platelets play a fundamental role in thrombus formation and in the pathogenesis of arterial thrombosis. Patterning surfaces for controlled platelet adhesion paves the way for adhesion and activation mechanisms in platelets and detection of platelet functional defects. Here, a new and simple method based on controlled polymerization of 2‐methacryloyloxyethyl phosphorylcholine (MPC) on the surface of styrene‐block‐(ethylene‐co‐butylene)‐block‐styrene (SEBS) is shown. The competition between polymerization and degradation enables platelet adhesion on SEBS to be switched on and off. The adhesive sites of the platelets can be down to single cell level, and the dysfunctional platelets can be quantitatively detected.

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13.
AMP-activated protein kinase (AMPK) is a serine/threonine protein kinase that is essential in regulating energy metabolism in all eukaryotic cells. It is a heterotrimeric protein complex composed of a catalytic subunit (α) and two regulatory subunits (β and γ). C-terminal truncation of AMPKα at residue 312 yielded a protein that is active upon phosphorylation of Thr172 in the absence of β and γ subunits, which is refered to as the AMPK catalytic domain and commonly used to substitute for the AMPK heterotrimeric complex in in vitro kinase assays. However, a comprehensive characterization of the AMPK catalytic domain is lacking. Herein, we expressed a His-tagged human AMPK catalytic domin (denoted as AMPKΔ) in E. coli, comprehensively characterized AMPKΔ in its basal state and after in vitro phosphorylation using top-down mass spectrometry (MS), and assessed how phosphorylation of AMPKΔ affects its activity. Unexpectedly, we found that bacterially-expressed AMPKΔ was basally phosphorylated and localized the phosphorylation site to the His-tag. We found that AMPKΔ had noticeable basal activity and was capable of phosphorylating itself and its substrates without activating phosphorylation at Thr172. Moreover, our data suggested that Thr172 is the only site phosphorylated by its upstream kinase, liver kinase B1, and that this phosphorylation dramatically increases the kinase activity of AMPKΔ. Importantly, we demonstrated that top-down MS in conjunction with in vitro phosphorylation assay is a powerful approach for monitoring phosphorylation reaction and determining sequential order of phosphorylation events in kinase-substrate systems.
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14.
The reaction of 2,6-dibenzylidenecyclohexanone with PCl5 occursvia the sequential stages of desoxychlorination and substitutional phosphorylation to form (after oxidation, methoxylation, and hydrolysis on the surface of the chromatographic SiO2 adsorbent) organophosphorus products of the 1-(a-chloro-, a-hydroxy-, or -alkoxy)benzyl-2-chloro-3-(-(dimethylphosphoryl)benzylidene)cyclobex-1-ene series.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 2, pp. 441–443, February, 1996.  相似文献   

15.
The neutral, cationic, and anionic structures of both prototropic tautomers oftrans- andcis-urocanic acid [(E)- and (Z)-3-(1H-imidazol-4(5)-yl)propenoic acid, respectively] were studied by using semiempirical andab initio gas-phase calculations. Potential energy surfaces of the structures were calculated by using the semiempirical AM1 method, and the geometries corresponding to global minima on these surfaces were optimized up to the MP2/6-31G* level of theory. The calculated protonation forms of each urocanic acid isomer have a planar molecular structure due to a delocalized -electron system, and all of them prefer thes-trans conformation with respect to the bond between the imidazole and the propenoic acid moieties. Thecis-urocanic acid structures are stabilized by an intramolecular hydrogen bond. The chargedcis-urocanic acid isomers have a lower molecular energy than the correspondingtrans-isomers, whereas the neutral molecules have, after inclusion of thermodynamic corrections, approximately the same energy. The cationic urocanic acid structures have about 2500 kJ mol–1 lower energy than the anionic ones and about 1000 kJ mol–1 lower energy than the neutral ones. The nonzwitterionic forms of the neutral urocanic acid isomers have about 200 kJ mol–1 lower energy than the zwitterionic ones. These energy differences are explained by the proton affinities of the imidazole and the propenoic acid moieties of the urocanic acid structures.  相似文献   

16.
Nucleophilic substitution of hydrogen in pyrazine N-oxides under the action of CH-active compounds requires activation with acylating agents. This activation facilitates aromatization of intermediate H adducts via elimination of the acid residue to form substituted pyrazines. More electrophilic 1,2,4-triazine 4-oxides react with carbanions derived from CH-active compounds without additional activation according to a scheme, which has previously been unknown for azine N-oxides. This scheme involves aromatization of H adducts through elimination of water by the E1cb mechanism. The reaction products occur in DMSO-d6 solutions predominantly as 6-methylene-1,6-dihydropyrazines and 5-methylene-4,5-dihydro-1,2,4-triazines.  相似文献   

17.
Exchange kinetics of Ba2+-18-crown-6 complex in deuterated methanol solution was studied by proton NMR line-shape analysis of a series of solutions containing equal population of free and complexed 18-crown-6, but varying concentration of the macrocycle, at various temperatures. From –33 to 37°C, the predominant mechanism for the exchange of the ligand between the two sites is a bimolecular pathway which is characterized by the following activation parameters:E a=47±2 kJ-mol–1; H =45±2 kJ-mol–1; S =–8±4 J-mol–1-K–1. However, the contribution of a dissociative mechanism with activation parametersE a=36±5 kJ-mol–1, H =33±5 kJ-mol–1 and S =104±18 J-mol–1-K–1 becomes more important at higher temperatures.  相似文献   

18.
The kinetics of the solvolysis of [Co(CN)5Cl]3– have been investigated in water +2-methoxyethanol and water + diethylene glycol mixtures. Although the addition of these linear hydrophilic cosolvent molecules to water produces curvature in the variation of log(rate constant) with the reciprocal of the dielectric constant, their effect on the enthalpy and entropy of activation is minimal, unlike the effect of hydrophobic cosolvents. The application of a Gibbs energy cycle to the solvolysis in water and in the mixtures using either solvent-sorting or TATB values for the Gibbs energy of transfer of the chloride ion between water and the mixture shows that the relative stability of the emergent solvated Co(III) ion in the transition state compared to that of Co(CN)5Cl3– in the initial state increases with increasing content of cosolvent in the mixture. By comparing the effects of other cosolvents on the solvolysis, this differential increase in the relative stabilities of the two species increases with the degree of hydrophobicity of the cosolvent.List of Symbols v2 partial molar volume of the cosolvent in water + cosolvent mixtures - V 2 o molar volume of the pure cosolvent - H mix E excess enthalpy of mixing water and cosolvent - S mix E excess entropy of mixing water and cosolvent - G t o (i)n the Gibbs energy of transfer of speciesi from water into the water + cosolvent mixture excluding electrostatic contributions - k s first order rate constant for the solvolysis in water + cosolvent mixtures - D s dielectric constant of the water + cosolvent mixture - H * the enthalpy of activation for the solvolysis - S * the entropy of activation for the solvolysis - G * the Gibbs energy of activation for the solvolysis - V * the volume of activation for the solvolysis - i * speciesi in the transition state for the solvolysis - H o Hammett Acidity Function - TATB method for estimating the Gibbs energy of transfer for single ions assuming those for Ph4As+ and BPh 4 are equal  相似文献   

19.
Abstract— The ability of photodynamic treatment (PDT) with the phthalocyanine Pc 4 to activate cellular signal transduction pathways in murine lymphoma L5178Y-R cells has been assessed by observing increases in protein tyrosine phosphorylation at early times post-PDT. Western blot analysis with an anti-phosphotyrosine antibody revealed a dramatic increase in phosphorylation of two major protein bands of Mr -80000 and -55000 in response to PDT. The increase was PDT dose-dependent, occurred as early as 20 s after initiation of light exposure of Pc 4-pre-loaded cells and was amplified by the presence of the protein tyrosine phosphatase inhibitor, sodium ortho-vanadate (NaV04). By immunoprecipitation, one of the Mr –80000 phosphorylated proteins has been identified as HS1, a substrate of nonreceptor-type protein tyrosine kinases. Although vanadate greatly enhanced the level and extent of PDT-induced phosphorylation, it had no influence on overall photocytotoxicity or on the rate of apoptotic DNA fragmentation. Genistein, an inhibitor of protein tyrosine kinases, diminished tyrosine phosphorylation of the Mr –80000 and other proteins and dramatically potentiated cell killing induced by PDT but did not significantly affect PDT-induced apoptosis. The results suggest that PDT rapidly activates a membrane-associated src family kinase(s) in L5178Y-R cells, one substrate of which is HS1, and that protein tyrosine phosphorylation is part of a stress response, protecting a portion of the cells from the lethal effects of PDT but not altering the mechanism by which they die.  相似文献   

20.
The kinetics of oxidation of CoIIHEDTA {HEDTA = N-(2-hydroxyethyl)ethylenediamine-N,N,N-triacetic acid} by vanadate ion have been studied in aqueous acid in the pH range 0.75–5.4 at 43–57 °C. The reaction exhibits second-order kinetics; first-order in each of the reactants. The reaction rate is a maximum at pH = 2.1. A mechanism is proposed in which the species [CoIIHEDTA(H2O)] and VO2 + react to form an intermediate which decompose slowly to give pentadentate CoIIIHEDTA(H2O) and VIV as final products. The rate law was derived and the activation parameters calculated: H* = 26.96 kJ mol–1 and S* = –311.08 JK–1 mol–1.  相似文献   

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