吡啶甲酸分子平衡构型的ab initio理论研究

本文用能量梯度法TEXAS从头计算程序,选取4-21G(,N原子含极化d轨道)基组,对α-,β-吡啶甲酸分子的平衡几何构型进行了全优化计算,二套基组的理论优化表明,三个吡啶甲酸分子都具有平面的平衡构型,其计算键长经4-21G 基组的标准经验校正值校正后,所得的理论预测平衡几何构型与X射线单晶衍射实验结果有很好的一致性.对部分键长以及羧基与吡啶华平面的二面角中出现的差异进行了讨论.     

小分子硫原子团簇正离子的结构稳定性

用分子图形软件设计出49种硫原子团簇Sn+(n=3～13)的结构,使用B3LYP密度泛函进行几何构型优化和振动频率计算,根据分子的总能量得出最稳定的同分异构体.在硫原子团簇正离子中,大部分原子为二配位成键.带有一、三配位的原子结构的总能量较高.部分最稳定硫原子团簇正离子的构型与最稳定的中性硫原子团簇的构型完全不同.     

五员碳环、氮环和磷环比较的量子化学研究

用密度泛函(DFT)理论中的B3LYP和从头算(abinitio)理论中UHF,在6-31G基组水平上,对五员碳环、氮环和磷环进行几何优化计算,由所得结果讨论了分子的成键情况,对两类环(一类是C5H5、N5、P5;另一类是C5H5-、N5-和P5-)的相对稳定性分别作比较。结果表明:有机五员碳环比无机五员氮环、磷环稳定,而五员氮环与五员磷环相比,磷环更稳定。     

磷酰化丝氨酸形成六配位磷中间体的理论研究

用MNDO方法对磷酰化丝氨酸仿生化反应机理中六配位磷中间体的形成过程进行了研究.磷酰化丝氨酸(1)形成分子内磷酸-羧酸分子内混酐的五配位磷中间体(2)后,其酸性质子解离,分子经过具有氢桥键结构的过渡态,使氨基酸侧链羟基上的氢通过氢键作用向磷上的O₁进行转移,然后再经过构型由三角双锥向八面体的转变,形成六配位磷中间体(3).氢桥键的存在使反应过渡态能量降低,其相对能量为148.5kJ/mol.理论计算较成功的解释了六配位磷中间体的形成机理以及磷酰化丝氨酸仿生化反应中羧基和侧链羟基共同参与的实验结果.     

二氨基二硝基乙烯结构和性质的理论研究

对三种二氨基二硝基乙烯同分异构体进行了HF/6-31G^*^*水平、DFT-B3LYP/6-31G^*^*水平的几何全优化以及MP2/6-31G^*^*//HF-6-31G^*^*水平的总能量计算。结果表明,1,1-二氨基-2,2-二硝基乙烯(Ⅰ)总能量比顺式(Ⅱ)和反式(Ⅲ)1,2-二氨基-1,2-二硝基乙烯的总能量低,即热力学稳定性次序为Ⅰ>Ⅲ>Ⅱ。分子的共轭性和分子内氢键的强度次序为Ⅰ≈Ⅲ>Ⅱ,前沿轨道能级差次序为Ⅰ>Ⅱ>Ⅲ,也均表明(Ⅰ)最稳定。此外还计算研究了标题物的红外光谱;化合物Ⅰ的理论计算与实验值良好相符。在此基础上计算研究了标题物的热力学性质。     

两个四硫富瓦烯分子正离子自由基TTF·^＋之间的共价吸引作用

使用MP2／6-311G方法得到了四硫富瓦烯自由基正离子二聚体（TTF·^＋ -TTF·^＋）能量极小点的结构．这显示这种正离子间的吸引作用存在．这种新的吸引作用是望远镜形状的20中心2电子分子间共价π/π键．这种共价π/π键的键能约为-21kcal·mol^-1,它被正离子间的库伦排斥作用掩盖．有负离子围绕的四硫富瓦烯自由基正离子二聚体（TTF·^＋ -TTF·^＋）体系是稳定的．     

双对苯氰基系列分子气相HeI紫外光电子能谱和量子化学研究

测定了4,4′-二氰基联苯(1),4,4′-二氰基二苯醚(2),4,4′-二氰基二苯甲烷(3),4,4′-二氰基二苯酮(4),4,4′-二氰基二苯砜(5)的气相HeI紫外光电子能谱,借助于Gauss-94采用RHF/6-31G方法对其几何构型作全优化,计算分子轨道及能级,对其低电离能区的谱带给予指认,得到通过空间和通过键作用的相对强弱直接影响分子轨道次序的结论. 将立体效应和电子效应分开讨论,得到该系列分子电离能的变化规律.     

硝胺及其甲基衍生物的从头计算研究 I: 平衡几何构型的全优化

我们用移植的TEXAS梯度法从头计算程序, 选取STO-4-21G基组, 对硝胺、甲硝胺和二甲硝胺等分子的平衡几何构型进行了全优化计算。其C-N, N-H和C-H等键长的计算结果以4-21G基组的标准校正值校正之后, 所得理论预测值与实验数据良好相符, 对N-N,N-O键长以及键角、两面角等构型参数, 对照计算和实验结果进行了讨论。     

硝胺及其甲基衍生物的从头计算研究 I: 平衡几何构型的全优化

我们用移植的TEXAS梯度法从头计算程序, 选取STO-4-21G基组, 对硝胺、甲硝胺和二甲硝胺等分子的平衡几何构型进行了全优化计算。其C-N, N-H和C-H等键长的计算结果以4-21G基组的标准校正值校正之后, 所得理论预测值与实验数据良好相符, 对N-N,N-O键长以及键角、两面角等构型参数, 对照计算和实验结果进行了讨论。     

1, 2-二硒方酸气相酸性和芳香性的理论研究

在RHF/6-311G^*^*水平优化得到1,2-二硒方酸(3,4-二羟基-3-环丁烯-1,2-二硒酮)三种平面构象异构体的平衡几何构型。进一步用MP2(full)/6-311G^*//RHF/6-311G^*^*方法计算三种异构体的单点能量,发现ZZ型异构体是能量最低构象,且ZZ和ZE型能量非常接近。用优化的最稳定构象ZZ型异构体在RHF/6-311G^*^*//RHF/6-311G^*^*,RHF/6-311+G^*^*//RHF/6-311+G^*^*,MP2(full)/6-311+G^*^*//RHF/6-311+G^*^*和B3LYP/6-311+G^*^*//B3LYP/6-311+G^*^*水平计算其气相酸性[ΔGⅲ~(~2~9~8~K~)]和同键反应芳香性稳定化能(HASE)。用基团加和法(groupincrementapproach)在RHF/6-311+G^*^*//RHF/6-311+G^*^*和B3LYP/6-311+G^*^*//B3LYP/6-311+G^*^*水平计算其磁化率增量(Λ)。计算结果指出标题化合物的键长发生了平均化,同键反应芳香性稳定化能和磁化率增量均为负值,表明它具有芳香性,实现了标题化合物芳香性的几何、能量和磁性的判定。     

不饱和类烯H2PBLiF的构型及异构化反应

用ＨＦ／６－３１Ｇ＊＊解析梯度方法研究了无机不饱和类烯Ｈ２ＰＢＬｉＦ的结构,共得到３个平衡构型和２个异构化反应的过渡态构型,动力学分析表明,其中两种平衡构型是它们存在和参加化学反应的基本构型,分析了各平衡构型的结构特点及稳定性,给出了各构型的Ｍｕｅｌｌｉｋｅｎ集居数,并简单讨论了２种基本构型的化学活性。     

线形碳元素簇合物的成键性质

在ab initio 3-21G水平上, 用能量梯度法优化了线性碳元素簇合物C_n~e(n为成簇原子个数, e为电荷)的平衡几何结构. 所得的电离势随成簇原子个数的改变, 呈现出不同程度的奇偶交替变化趋势. 在ab initio计算基础上, 用Boys方法, 对其占据正则分子轨道进行定域化变换, 得到了它们的定域分子轨道. 对定域分子轨道性质的分析表明, 线性碳元素簇合物中, 主要键型有双中心σ和π健, 双中心弯键和三中心香蕉健, 以及多中心σ和π健. 这种键型的多样化可视为小元素簇的成健特征. 此外, 通过对其成键性质的分析, 讨论了线性碳元素簇的稳定性. 对于小碳元素簇, 化学键的共轭性对其稳定性具有十分显著的作用.     

A comparative molecular field analysis (CoMFA) study using semiempirical, density functional, ab initio methods and pharmacophore derivation using DISCOtech on sigma 1 ligands

The Comparative Molecular Field Analysis (CoMFA) was developed to investigate a three-dimensional quantitative structure activity relationship (3D-QSAR) model of ligands for the sigma 1 receptor. The starting geometry of sigma-1 receptor ligands was obtained from the Tripos force field minimizations and conformations were decided from DISCOtech using the SYBYL 6.8. program. The structures of 48 molecules were fully optimized at the ab initio HF/3-21G* and semiempirical AM1 calculations using GAUSSIAN 98. The electrostatic charges were calculated using several methods such as semiempirical AM1, density functional B3LYP/3-21G*, and ab initio HF/3-21G*, MP2/3-21G* calculations within GAUSSIAN 98. Using the optimized geometries, the CoMFA results derived from the HF/3-21G method were better than those from AM1. The best CoMFA was obtained from HF/3-21G* optimized geometry and charges (R2 = 0.977). Using the optimized geometries, the CoMFA results derived from the HF/3-21G methods were better than those from AM1 calculations. The training set of 43 molecules gave higher R2 (0.989-0.977) from HF/3-21G* optimized geometries than R2 (0.966-0.911) values from AM1 optimized geometries. The test set of five molecules also suggested that HF/3-21G* optimized geometries produced good CoMFA models to predict bioactivity of sigma 1 receptor ligands but AM1 optimized geometries failed to predict reasonable bioactivity of sigma 1 receptor ligands using different calculations for atomic charges.     

Ab initio Study on Structures and Isomerization of Magnesium Fluorosilylenoid H2SiFMgF

The structures and isomerization of magnesium fluorosilylenoid H2SiFMgF were investigated by ab initio molecular orbital theory. Four equilibrium structures and three isomeric transition states were located and fully optimized at the B3LYP/6-31G(d,p) and G3MP2B3 levels, respectively. Based on the B3LYP/6-31G(d,p) optimized geometries, harmonic frequencies of various structures were obtained and 29Si chemical shifts were calculated. The solvent effects were investigated by means of the polarizable continuum model using THF as a solvent at B3LYP/6-31G(d,p) level. Isomerization paths for isomers were confirmed by intrinsic reaction coordinate calculations. The calculated results show that tetrahedral structure has the lowest energy and is the most stable; tetrahedral, three-membered ring, and p-complex structures are suggested to be the experimentally detectable ones; and σ-complex structure has the highest energy and will not exist.     

Molecular conformations and harmonic force field of 1,3,5-benzenetriol molecule from ab initio and density functional theory investigations

The molecular conformers of the molecule 1,3,5-benzenetriol have been studied by ab initio and density functional methods to determine optimized equilibrium geometries, harmonic vibrational frequencies and relative stability. The results of the quantum-chemical calculations have been used to investigate the functional theory-infrared (FT-IR) spectrum of the 1,3,5-benzenetriol vapors trapped in Ar matrix at 12 K.     

Infrared and Raman spectra, ab initio calculations of structure and vibrational assignment of 1-fluoro-2-butyne.

The infrared spectra (3500-50 cm(-1)) of the gas and solid and the Raman spectra (3500-50 cm(-1)) of the liquid and solid have been recorded for 1-fluoro-2-butyne, CH3-C-triple bond-C-CH2F. Equilibrium geometries and energies have been determined by ab initio and hybrid DFT methods using a number of basis sets. A vibrational assignment is proposed based on the force constants, relative intensities, depolarization ratios from the ab initio and DFT calculations and on vibrational-rotational band contours obtained using the calculated equilibrium geometries. From calculated energies it is shown that the CH3 group exhibits almost completely free rotation which is in agreement with the observation of Coriolis sub-band structure in two of the degenerate methyl vibrations. The results are compared to the corresponding quantities for some similar molecules.     

双氮桥联1,10-菲咯啉大环化合物分子构型的从头算研究

应用规范不变原子轨道法(GIAO)在RHF/6-31G**和B3LYP/6-31G**水平上计算了质子化双氮桥联1,10-菲咯啉大环化合物(H4HAPP2+)C2h和C2h构型的1HNMR,并用TDDFT法计算了H4HAPP2+电子光谱.结果表明,B3LYP/6-31G*优化的C2h构型为较优构型,经谐振频率验证无虚频,C2h构型是H4HAPP2+合理的对称性构型.     

Ab initio and DFT study of the geometric structures and static dipole (hyper)polarizabilities of aromatic anions

The geometries and the static dipole (hyper)polarizabilities (alpha, beta, gamma) of a series of aromatic anions were investigated at the ab initio (HF, MP2, and MP4) and density functional theory DFT (B3LYP) levels of theory. The anions chosen for the present study are the benzenethiolate (Ph-S-), benzenecarboxylate (Ph-CO2-), benzenesulfinate (Ph-SO2-), benzenesulfonate (Ph-SO3-), and 1,3-benzenedicarboxylate (1,3-Ph-(CO2)2(2-)). For benzenethiolate anion, additional alpha, beta, and gamma calculations were performed at the coupled cluster CCSD level with MP2 optimized geometries. The standard diffuse and polarized 6-31+G(d,p) basis set was employed in conjunction to the ab initio and DFT methods. Additional HF calculations were performed with the 6-311++G(3d,3p) basis set for all the anions. The correlated electric properties were evaluated numerically within the formalism of finite field. The optimized geometries were analyzed in terms of the few reports about the phenolate and sulfonate ions. The results show that electron correlation effects on the polarizabilities are very important in all the anion series. Was found that Ph-SO2- is highly polarizable in terms of alpha and beta, and the Ph-S- is the highest second hyperpolarizable in the series. The results of alpha were rationalized in terms of the analysis of the polarization of charge based in Mulliken atomic population and the structural features of the optimized geometries of anions, whereas the large differences in the beta and gamma values in the series were respectively interpreted in terms of the bond length alternation BLA and the separation of charge in the aromatic ring by effects of the substitution. These results allowed us to suggest the benzenesulfinate and benzenethiolate anions as promising candidates that should be incorporated in ionic materials for second and third-order nonlinear optical devices.     

亚烷基卡宾与亚烷基锂氟类卡宾化学键结构的量子拓扑研究

用ab initio(3-21G)方法对亚烷基卡宾H_2C—C的单线态及三线态结构进行了电子密度拓扑分析,说明了它们的亲电、亲核反应方向,讨论了亚烷基锂氟类卡宾H_2C—CLiF的4种构型,论证了该分子中不存在四元环结构、Li—C键以静电作用为主的特性,并预测了加成反应机理。