The role of surface defects in large organic molecule adsorption: substrate configuration effects

The role of the configuration of metal surface atoms in the interaction between individual large, planar organic molecules and a metal substrate was investigated by low-temperature scanning tunneling microscopy and density functional theory calculations, including a semi-empirical correction scheme to account for dispersion effects. As test case, we used the adsorption of the oligopyridine derivative 2-phenyl-4,6-bis(6-(pyridine-2-yl)-4-(pyridine-4-yl)pyridine-2-yl)pyrimidine (2,4'-BTP) on a stepped Ag(100) surface. Both experiment, via statistical evaluation of the adsorption site and orientation of 2,4'-BTP admolecules, and theory indicate distinct structural effects. The results are compared with the adsorption behavior of pyridine derivatives and benzene on metal surfaces. Consequences on the understanding of the interaction between heteroatoms or functional groups in large organic adsorbates and metal atoms in typical nano-scaled surface defects and hence of the interaction with more realistic metal surfaces are discussed.     

Growth of an oligopyridine adlayer on Ag(100)--a scanning tunnelling microscopy study

The growth behaviour of the oligopyridine derivative 2-phenyl-4,6-bis(6-(pyridine-2-yl)-4-(pyridine-4-yl)pyridine-2-yl)pyrimidine (2,4'-BTP) on Ag(100) in the sub-monolayer regime was investigated by variable temperature scanning tunneling microscopy under ultra-high vacuum conditions. Over the entire coverage range, the molecules are adsorbed in a flat lying configuration, with preferential orientations with respect to the <110> direction of the surface. The azimuth angles are derived using a previously introduced algorithm that fits the positions of the intramolecular N atoms geometrically to the underlying surface lattice ("points-to-lattice fit") [H.E. Hoster et al., Langmuir 2007, 23, 11570], indicating that the orientation of the admolecules and thus of the adllayer structure with respect to the Ag(100) surface lattice is determined by the 2,4'-BTP-Ag(100) interaction, while intermolecular interactions are decisive for the structure of the adlayer. The results will be compared to other adsorption systems.     

Hierarchical interactions and their influence upon the adsorption of organic molecules on a graphene film

The competition between intermolecular interactions and lateral variations in the molecule-substrate interactions has been studied by scanning tunneling microscopy (STM), comparing the phase formation of (sub)monolayers of the organic molecule 2,4'-BTP on buckled graphene/Ru(0001) and Ag(111) oriented thin films on Ru(0001). On the Ag films, the molecules form a densely packed 2D structure, while on graphene/Ru(0001), only the areas between the maxima are populated. The findings are rationalized by a high corrugation in the adsorption potential for 2,4'-BTP molecules on graphene/Ru(0001). These findings are supported by temperature programmed desorption (TPD) experiments and theoretical results.     

Structure formation in bis(terpyridine) derivative adlayers: molecule-substrate versus molecule-molecule interactions

The influence of the substrate and the deposition conditions-vapor deposition versus deposition from solution-on the structures formed upon self-assembly of deposited bis(terpyridine) derivative (2,4'-BTP) monolayers on different hexagonal substrates, including highly oriented pyrolytic graphite (HOPG), Au(111), and (111)-oriented Ag thin films, was investigated by high-resolution scanning tunneling microscopy and by model calculations of the intermolecular energies and the lateral corrugation of the substrate-adsorbate interaction. Similar quasi-quadratic network structures with almost the same lattice constants obtained on all substrates are essentially identical to the optimum configuration expected from an optimization of the adlayer structure with C-H...N-type bridging bonds as a structure-determining factor, which underlines a key role of the intermolecular interactions in adlayer order. Slight distortions from the optimum values to form commensurate adlayer structures on the metal substrates and the preferential orientation of the adlayer with respect to the substrate are attributed to the substrate-adsorbate interactions, specifically, the lateral corrugation in the substrate-adsorbate interaction upon lateral displacement and rotation of the adsorbed BTP molecules. The fact that similar adlayer structures are obtained on HOPG under ultrahigh vacuum conditions (solid|gas interface) and on HOPG in trichlorobenzene (solid|liquid interface) indicates that the intermolecular interactions are not severely affected by the solvent.     

The unexpected role of pyridine-2-carboxylic acid in manganese based oxidation catalysis with pyridin-2-yl based ligands

A number of manganese-based catalysts employing ligands whose structures incorporate pyridyl groups have been reported previously to achieve both high turnover numbers and selectivity in the oxidation of alkenes and alcohols, using H(2)O(2) as terminal oxidant. Here we report our recent finding that these ligands decompose in situ to pyridine-2-carboxylic acid and its derivatives, in the presence of a manganese source, H(2)O(2) and a base. Importantly, the decomposition occurs prior to the onset of catalysed oxidation of organic substrates. It is found that the pyridine-2-carboxylic acid formed, together with a manganese source, provides for the observed catalytic activity. The degradation of this series of pyridyl ligands to pyridine-2-carboxylic acid under reaction conditions is demonstrated by (1)H NMR spectroscopy. In all cases the activity and selectivity of the manganese/pyridyl containing ligand systems are identical to that observed with the corresponding number of equivalents of pyridine-2-carboxylic acid; except that, when pyridine-2-carboxylic acid is used directly, a lag phase is not observed and the efficiency in terms of the number of equivalents of H(2)O(2) required decreases from 6-8 equiv. with the pyridin-2-yl based ligands to 1-1.5 equiv. with pyridine-2-carboxylic acid.     

The effect of the cooling atmosphere in the preparation of flame-annealed Pt(111) electrodes on CO adlayer oxidation

The effect of the cooling atmosphere on the rate of CO adlayer oxidation on flame-annealed Pt(111) has been studied. Cooling of a flame-annealed Pt(111) electrode in air results in a higher amount of crystalline defects compared to Pt(111) cooled in a hydrogen–argon stream. Although the blank profiles in 0.5 M H₂SO₄ of Pt(111), cooled in air and under oxygen exclusion, are virtually identical, CO adlayer oxidation occurs at significantly lower overpotentials on the former electrode. Three voltammetric peaks are observed for subsaturated CO adlayer oxidation on Pt(111), cooled in Ar+H₂ mixture, while only two peaks develop in the case of a Pt(111) surface cooled in air. Random crystalline defects, introduced via cooling of a flame-annealed Pt(111) in air, enhance CO adlayer oxidation, and apparently also suppress the third high-potential peak observed on a quasi-perfect (111) surface. The high sensitivity of the saturated CO adlayer oxidation to the presence of crystalline defects on Pt(111) can hence be used as a straightforward, sensitive, though qualitative method to assess the degree of crystalline order of the electrode.     

Synthesis, characterization and fluorescence properties of novel pyridine dicarboxylic acid derivatives and corresponding Tb(III) complexes

Two novel ligands containing two pyridine-2,6-dicarboxylic acid conjugative units, 4-(2-(2,6-dicarbox-ypyridin-4-yl)vinyl)pyridine-2,6-dicarboxylic acid (L(1)) and 4-(4-(2-(2,6-dicarboxypyridin-4-yl)vinyl)styryl)pyridine-2,6-dicarboxylic acid (L(2)) and their complexes with Tb(III) have been synthesized and characterized by elemental analysis, IR spectra and NMR. The ligand synthetic route was optimized and the yield of ligands reached over 78% as a result of the Wittig-Horner reaction used. The fluorescent intensities of these complexes with corresponding complexes with single pyridine-2,6-dicarboxylic acid unit was compared. The result has shown that the ligands with two pyridine-2,6-dicarboxylic acid units are the excellent sensitizers to lanthanide fluorescence. Also, we investigated the fluorescence properties of these complexes in different solution and in different pH value. Due to their excellent green-emmiter, they would be a potential candidate material for applications in organic light-emitting devices and medical diagnosis.     

泰地唑胺的合成工艺改进

以4-溴-3-氟苯胺为原料,用氯甲酸苄酯保护氨基后,采用一锅两步法制得关键中间体--N-苄氧羰基-3-氟-4-［2-(2-甲基四唑-5-基)吡啶-5-基］苯胺（6）; 6在二异丙基氨基锂作用下与(R)-丁酸缩水甘油酯经环合反应合成了泰地唑胺,总收率53.2%,含量98.5%,其结构经¹H NMR和LC-MS确证。     

Molecular Diversity from the L-Proline-Catalyzed,Three-Component Reactions of 4-Hydroxycoumarin,Aldehyde, and 3-Aminopyrazole or 1,3-Dimethyl-6-aminouracil

The three-component reaction of 4-hydroxycoumarin, aldehyde, and aminopyrazole in the presence of a catalytic amount of L-proline in ethanol under reflux conditions provided the cyclized product (dihydrochromeno[4,3-b]pyrazolo[4,3-e]pyridine-6(7H)-one), whereas under similar reaction conditions, replacing aminopyrazole by 1,3-dimethyl-6-aminouracil provided the acyclic three-component product (6-amino-5-((4-hydroxy-2-oxo-2H-chromen-3-yl)methyl)-1,3-dimethylpyrimidine-2,4(1H,3H)-dione). This method is metal free and atom economical, and avoids column chromatographic purification as all the products can be purified by recrystallization.     

Light-induced structural transformation in self-assembled monolayer of 4-(amyloxy)cinnamic acid investigated with scanning tunneling microscopy

UV light irradiation effect on the structural transformation in a self-assembled monolayer of 4-(amyloxy)cinnamic acid (AOCA) on Au(111) has been investigated by using electrochemical scanning tunneling microscopy (ECSTM), cyclic voltammetry, and infrared (IR) spectroscopy. A well-defined 4-(amyloxy)cinnamic acid adlayer with a (4 x 11) symmetry was first prepared on Au(111). After UV-light irradiation onto the adlayer, a new adlayer is observed with different molecular arrangement and a symmetry of (5 x 8). On the basis of the results from high-resolution STM image and photochemical reaction, a dimerizaion of AOCA molecules in the adlayer with structural transformation is concluded. Schematic models have been proposed for the unirradiated and irradiated adlayers, respectively. The direct evidence at molecular level about photodimerization of cinnamic acid on metal substrate is presented.     

Molecular adsorption at well-defined electrode surfaces: hydroquinone on Pd(111) studied by EC-STM

The interaction of hydroquinone (H2Q) with well-defined Pd(111) surfaces at preselected potentials in dilute H2SO4 has been studied by molecule-resolved electrochemical scanning tunneling microscopy (EC-STM). H2Q spontaneously undergoes oxidative chemisorption to benzoquinone (Q), which adopts a slightly tilted parallel orientation. Evidently, the surface coordination is through the quinone pi-electron system. At potentials within the double-layer region, a close-packed well-ordered Pd(111)-(3 x 3)-Q adlattice was formed. A potential excursion to 0.7 V, a potential at which the solution-phase Q/H2Q redox reaction takes place, introduced disorder into the organic adlayer; this positive-potential-induced order-to-disorder phase transition is reversible because the ordered (3 x 3)-Q adlattice was regenerated when the potential reverted to 0.4 V. When the potential was poised at 0.2 V, a potential at which hydrogen evolution was initiated, an appreciable fraction of Q was (hydrogenatively) desorbed; the remnant Q molecules were agglomerated in small islands that retained the (3 x 3) symmetry of the full adlayer. Two possible structural models of the Pd(111)-(3 x 3)-Q adlattice are described.     

Coverage dependent structures of oligopyridine adlayers on (111) oriented Ag films

The coverage dependent formation of ordered structures in vapor deposited 2,4'-bis(terpyridine)derivatives (2,4'-BTP) on (111) oriented Ag films was investigated by STM. Following a two-dimensional (2D) disordered gas phase at lowest coverages, a sequence of at least three ordered structures is observed with increasing coverage. These include a 'parallel chain structure' (PCS), a 'quasi-quadratic network' (QQN) structure, and a 'packed windmill structure' (PWS), with ideal coverages of 0.37, 0.4, and 0.44 molecules nm(-2). At intermediate coverages between 0.37 and 0.44 molecules nm(-2), these structures coexist in larger islands. The energetics of the different phases, whose structures are mainly determined by attractive C-H[dot dot dot]N bridges, are discussed in a picture including C-H[dot dot dot]N and C-H[dot dot dot]H-C interactions and lateral variations in the substrate-adsorbate interactions.     

Tetradentate vs pentadentate coordination in copper(II) complexes of pyridylbis(aminophenol) ligands depends on nucleophilicity of phenol donors

The ligand binding preferences of a series of potentially pentadentate pyridylbis(aminophenol) ligands were explored. In addition to the previously reported ligands 2,2'-(2-methyl-2-(pyridin-2-yl)propane-1,3-diyl)bis(azanediyl)bis(methylene)diphenol (H(2)L(1)) and 6,6'-(2-methyl-2-(pyridin-2-yl)propane-1,3-diyl)bis(azanediyl)bis(methylene)bis(2,4-di-tert-butylphenol) (H(2)L(1-tBu)), four new ligands were synthesized: 6,6'-(2-methyl-2(pyridine-2-yl)propane-1,3-diyl)bis(azanediyl)bis(methylene)bis(2,4-dibromophenol) (H(2)L(1-Br)), 6,6'-(2-methyl-2(pyridine-2-yl)propane-1,3diyl)bis(azanediyl)bis(methylene)bis(2-methoxyphenol) (H(2)L(1-MeO)), 2,2'-(2-methyl-2(pyridine-2-yl)propane-1,3diyl)bis(azanediyl)bis(methylene)bis(4-nitrophenol) (H(2)L(1-NO2)), and 2,2'-(2-phenylpropane-1,3-diyl)bis(azanediyl)bis(methylene)diphenol (H(2)L(2)). These ligands, when combined with copper(II) salts and base, form either tricopper(II) species or monocopper(II) species depending on the nucleophilicity of the phenol groups in the ligands. All copper complexes were characterized by X-ray crystallography, cyclic voltammetry, and spectroscopic methods in solution. The ligands in trimeric complexes [{CuL(1)(CH(3)CN)}(2)Cu](ClO(4))(2) (1), [{CuL(1)Cl}(2)Cu] (1a), and [{CuL(2)(CH(3)CN)}(2)Cu](ClO(4))(2) (1b) and monomeric complex [CuL(1-tBu)(CH(3)OH)] (2) coordinate in a tetradentate mode via the amine N atoms and the phenolato O atoms. The pyridyl groups in 1, 1a, and 2 do not coordinate, but instead are involved in hydrogen bonding. Monomeric complexes [CuL(1-Br)] (3a), [CuL(1-NO2)] (3b), and [CuL(1-MeO)Na(CH(3)OH)(2)]ClO(4) (3c) have their ligands coordinated in a pentadentate mode via the amine N atoms, the phenolato O atoms, and the pyridyl N atom. The differences in tetradentate vs pentadentate coordination preferences of the ligands correlate to the nucleophilicity of the phenolate donor groups, and coincide with the electrochemical trends for these complexes.     

Unexpected solid-state photochemistry of an alpha-thiophenyl-alpha'-thiophenyl-S,S-dioxo-substituted ketone

Samples of 2,4-dimethyl-2-(thiophen-3-yl)-4-(thiophen-3-yl-S,S-dioxo)pentan-3-one 2 were obtained by controlled MCPBA oxidation of 2,4-dimethyl-2,4-di(thiophen-3-yl)pentan-3-one 1. Rather than the expected photodecarbonylation, UV--vis irradiation of 2 led to the intramolecular 2 + 2 photocycloaddition product 5 in quantitative yields (by GC and NMR) both in solution and in crystalline solid state. Detailed X-ray powder diffraction analyses revealed that the solid-state reaction of sulfone 2 occurs with a loss of long-range order despite retaining some birefringence under polarized microscopy.     

Sb在Cu单晶电极上欠电位沉积的电化学和现场STM研究

应用循环伏安法和现场扫描隧道显微镜研究了在HClO4和H2SO4两种溶液中Sb于Cu(111)和Cu(100)电极上的欠电位沉积.结果表明,不同的表面原子排列和强吸附阴离子的存在将明显影响Sb的欠电位沉积行为.在结构较为开放的Cu(100)表面,Sb形成的欠电位沉积层结构也较为开放,并且伴随着表面合金的形成;而在密堆积的Cu(111)表面上,Sb形成了致密的单层结构.又当Cu(111)表面存在强吸附的SO42-时,Sb原子首先在SO42-吸附层与Cu表面交接的新台阶处成核,随后通过取代SO42-向上一层晶面发展,表现出独特的成核—生长行为;而在弱吸附的HClO4溶液中,Sb的欠电位沉积系以在晶面上随机形成一些单原子层高度的Sb岛为特征.在Cu(100)表面,通过SO42-的诱导共吸附,欠电位沉积的Sb原子形成了开放性更大的(4×4)结构,不同于在HClO4溶液中所形成的(22×22)R45°结构.     

Synthesis of 5-substituted benzyl-2,4-diamino pyrimidine derivatives as c-Fms kinase inhibitors

<正>A serials of novel 5-substituted benzyl-2,4-diamino pyrimidine derivatives have been synthesized and evaluated as inhibitors of c-Fms kinase by the standard MTT method.The results showed that compound 15,5-[3-methoxy-4-(pyridine-3-yl)benzyl]-2,4-diamino pyrimidine,had an IC_(50) of 1.45μmol/L in inhibiting the proliferation of M-CSF-dependent myeloid leukemia cells in mice (NFS-60),which was similar with GW2580,a selective inhibitor of c-Fms kinase.     

Methane oxidation mechanism on Pt(111): a cluster model DFT study

The electronic energy barriers of surface reactions pertaining to the mechanism of the electrooxidation of methane on Pt (111) were estimated with density functional theory calculations on a 10-atom Pt cluster, using both the B3LYP and PW91 functionals. Optimizations of initial and transition states were performed for elementary steps that involve the conversion of CH(4) to adsorbed CO at the Pt/vacuum interface. As a first approximation we do not include electrolyte effects in our model. The reactions include the dissociative chemisorption of CH(4) on Pt, dehydrogenation reactions of adsorbed intermediates (*CH(x) --> *CH(x-1) + *H and *CH(x)O --> *CH(x-1)O + *H), and oxygenation reactions of adsorbed CH(x) species (*CH(x) + *OH --> *CH(x)OH). Many pathways were investigated and it was found that the main reaction pathway is CH(4) --> *CH(3) --> *CH(2) --> *CH --> *CHOH --> *CHO --> *CO. Frequency analysis and transition-state theory were employed to show that the methane chemisorption elementary step is rate-limiting in the above mechanism. This conclusion is in agreement with published experimental electrochemical studies of methane oxidation on platinum catalysts that have shown the absence of an organic adlayer at electrode potentials that allow the oxidation of adsorbed CO. The mechanism of the electrooxidation of methane on Pt is discussed.     

Potential-induced structure changes of oligopyridine adlayers on Au(111) electrodes

The structure of a bisterpyridine-like oligopyridine (abbreviated as 2,4'-BTP) monolayer on Au(111), adsorbed from an acetone solution, was studied by in situ scanning tunneling microscopy and cyclic voltammetry in aqueous 0.1 M H2SO4. Short-range ordered adsorption with an average distance between the individual molecules of about 2 nm was observed only at electrode potentials positive of +0.4 V vs SCE, whereas at more negative potentials, no order could be found. With the help of Cu underpotential deposition, a potential-induced, fast, and fully reversible structure transition within the organic monolayer was identified at about +0.4 V vs SCE. At negative potentials the molecules apparently cluster together and consequently current-potential curves resemble those for a bare gold surface, whereas for E>+0.4 V vs SCE the molecules are spread over the entire surface in a hexagonal, close-packed fashion. This may have interesting consequences for switching between different template structures.     

PASE facile and efficient multicomponent approach to the new type of 5-C-substituted 2,4-diamino-5H-chromeno[2,3-b]pyridine scaffold

The new multicomponent reaction comprises the triethylamine catalyzed assembling of salicylaldehydes, 2-aminoprop- 1-ene-1,1,3-tricarbonitrile and 3-methyl-2-pyrazolin-5-one in small amount of propanol, which affords substituted 2,4-diamino-5-(5-hydroxy-3-methyl-1H-pyrazol-4-yl)-5Hchromeno[2,3-b]pyridine-3-carbonitriles in 63–98% yields. This process is in agreement with PASE principles and opens the way to new chromeno[2,3-b]pyridine scaffold containing 3-methyl-2-pyrazolin-5-one fragment, which is promising for various biomedical applications.     

A new [2 + 1] mixed ligand concept based on [99(m)Tc(OH2)3(CO)3]+: a basic study

Mixed ligand fac-tricarbonyl complexes of the general formula [M(L1)(L2)(CO)3](M = Re, 99(m)Tc, L1= imidazole, benzyl isocyanide, L2 = 1H-imidazole-4-carboxylic acid, pyridine-2,4-dicarboxylic acid, pyridine-2,5-dicarboxylic acid) have been prepared starting from the precursors [M(OH2)3(CO)3]+. The complexes can be obtained in good yield and purity in a two-step procedure by first attaching the bidentate ligand followed by addition of the monodentate. 99mTc compounds can also be prepared at the tracer level in one-pot procedures with L1 and L2 being concomitantly present. This [2 + 1] approach allows the labeling of bioactive molecules containing a monodentate or a bidentate donor site. Examples given in here are N-(tert-butoxycarbonyl)glycyl-N-(3-(imidazol-1-yl)propyl)phenylalaninamide, 5-((3-(imidazol-1-yl)propyl)aminomethyl)-2'-deoxyuridine and 4-(5-isonitrilpentyl)-1-(2-methoxyphenyl)-piperazine as L1 and N-((6-carboxypyridine-3-yl)methyl)glycylphenylalanine as L2. The corresponding second ligand can be used to influence the physico-chemical properties of the conjugate. The crystal structures of [99Tc(OH2)(imc)(CO)3], [Re(OH2)(2,4-dipic)(CO)3], [Re(bic)(2,4-dipic)(CO)3] and [Re(im)(2,5-dipic)(CO)3] are reported.