Molecular structure of caffeine as determined by gas electron diffraction aided by theoretical calculations

The molecular structure of caffeine (3,7-dihydro-1,3,7-trimethyl-1H-purine-2,6-dione) was determined by means of gas electron diffraction. The nozzle temperature was 185 °C. The results of MP2 and B3LYP calculations with the 6-31G⁷ basis set were used as supporting information. These calculations predicted that caffeine has only one conformer and some of the methyl groups perform low frequency internal rotation. The electron diffraction data were analyzed on this basis. The determined structural parameters (r_g and ∠_α) of caffeine are as follows: <r(NC)_ring> = 1.382(3) Å; r(CC) = 1.382(←) Å; r(CC) = 1.446(18) Å; r(CN) = 1.297(11) Å; <r(NC_methyl)> = 1.459(13) Å; <r(CO)> = 1.206(5) Å; <r(CH)> = 1.085(11) Å; ∠N₁C₂N₃ = 116.5(11)°; ∠N₃C₄C₅ = 121. 5(13)°; ∠C₄C₅C₆ = 122.9(10)°; ∠C₄C₅N₇ = 104.7(14)°; ∠N₉–C₄=C₅ = 111.6(10)°; <∠NCH_methyl> = 108.5(28)°. Angle brackets denote average values; parenthesized values are the estimated limits of error (3σ) referring to the last significant digit; left arrow in parentheses means that this parameter is bound to the preceding one.     

Phase diagram and local environment of Sn and Te: SnTeBi and SnTeBi2Te3 systems

From thermal analyses and X-ray diffraction the phase diagram of the BiSnTe and SnTeBi₂Te₃ sections was determined. The local environment of Sn and Te atoms was studied by ¹¹⁹Sn and ¹²⁵Te Mössbauer spectroscopy. The BiSnTe section showed a eutectic reaction at 267 °C and 20 % mole SnTe–80 % mole Bi. No intermediate compound was detected. The SnTeBi₂Te₃ section is characterized by a eutectic reaction at 585 °C and 40 % mole SnTe–60% mole Bi₂Te₃ and a peritectic reaction at 600 °C and 50 % mole SnTe–50% mole Bi₂Te₃. It corresponds to the compound SnBi₂Te₄, which has a rhombohedral layered structure with unit cell parameters a=4.3954(4) Å and c=41.606(1) Å. © 2000 Académie des sciences / Éditions scientifiques et médicales Elsevier SASSnTe / Bi / Bi₂Te₃ / phase diagram / Mössbauer     

Characterization,stability, and origin of natural radiation-induced defects in the biogenic calcite of Belemnitella americana from the Upper Cretaceous: An electron paramagnetic resonance study

The rostrum of Belemnitella americana (Morton) from the Marshalltown formation (Kmt, Upper Cretaceous) of the Chesapeake and Delaware Canal was investigated by electron paramagnetic resonance (EPR) spectroscopy. The rostrum composed of biogenic calcite possessed inorganic radical centers CO₂⁻, SO₂⁻, and SO₃⁻ with isotropic resonances with g values of 2.0007, 2.0057, and 2.0031, respectively. SO₃⁻ was found to also display an axially symmetric resonance typical of that seen in calcite of geologic origin with g_⊥=2.0036 and g_∥=2.0021. Mn²⁺ signals of orthorhombic symmetry and very narrow line width (∼0.1 mT) were also noted (|D|=9.3 mT (∼0.009 cm⁻¹), |E|=3.1 mT (∼0.003 cm⁻¹)). Isochronal annealing studies reveal that these inorganic radical species reside in energy traps that are significantly deeper than previously determined as revealed by their annealing temperatures: SO₂⁻ (isotropic), T^*∼340 °C; SO₃⁻ (isotropic), T^*∼230 °C; SO₃⁻ (axial), T^*∼190 °C. These data suggest that these spin centers may be used to extend the upper limit for dating purposes to times on the order of 1 Ma for SO₃⁻ (axial) and 200–300 Ma for SO₃⁻ (isotropic). Spin–spin and spin–lattice relaxation studies employing progressive microwave saturation were determined for all sulfur-based radical species and found to be consistent with the supposition of the isotropic signals existing in environments that are conducive to dynamic averaging of the g-anisotropy.     

The effects of hydrogen on KOH activation of petroleum coke

KOH activation of petroleum coke (PC) was conducted with 30 vol%H₂ + 70 vol% N₂ as carrier gas. TG-DTG, FTIR, elemental analysis, N₂ adsorption, GC and XRD techniques were used to investigate the effects of hydrogen on the activation. During the initial stage of the activation, i.e. the carbonization of the PC, additional CH and CH₂ species were formed due to the chemisorption of hydrogen on the nascent sites of the PC created by the removal of the surface heteroatom groups. The formation of the CH and CH₂ species increased the quantity of ‘active sites’ which is favorable to the further activation reaction, and developed the porous structure of the activated carbons. The micropore volume and BET surface areas of the activated carbon prepared under 30 vol% H₂ + 70 vol% N₂ and with a relatively low KOH/PC weight ratio of 2:1 have been increased from 0.78 cm³/g and 1936 m²/g to 0.97 cm³/g and 2477 m²/g, respectively, compared to that prepared in pure N₂ atmosphere with the same KOH/PC ratio.     

Synthesis,molecular structure and reactivity of new π-conjugated diyne with ferrocenyl and phenyl units

New π-conjugated butadiynyl ligand FcC(CH₃)₂Fc′–CC–CC–Ph (L₁) has been synthesized and its reaction with Co₂(CO)₈ has been studied. New clusters [FcC(CH₃)₂Fc′–CC–CC–Ph][Co₂(CO)₆]_n [(1): n = 1; (2): n = 2] and [Fc–CC–CC–Ph][Co₂(CO)₆]_n [(3): n =  1; (4): n = 2] were obtained by the reaction of ligands FcC(CH₃)₂Fc′–CC–CC–Ph (L₁) and Fc–CC–CC–Ph (L₂) with Co₂(CO)₈ respectively and the composition and structure of the clusters and ligands have been characterized by elemental analysis, FTIR, ¹H and ¹³C NMR and MS. The crystal structures of compounds L₁, L₂, 2 and 4 have been determined by X-ray single crystal analysis.     

Understanding the reactivity of [WNAr(CH2tBu)2(CHtBu)] (Ar = 2,6-iPrC6H3) with silica partially dehydroxylated at low temperatures through a combined use of molecular and surface organometallic chemistry

Reaction of [WNAr(CH₂tBu)₂(CHtBu)] (Ar = 2,6-iPrC₆H₃) with silica partially dehydoxylated at 200 °C does not lead only to the expected bisgrafted [(SiO)₂WNAr(CHtBu)] species, but also surface reaction intermediates such as [(SiO)₂WNAr(CH₂tBu)₂]. All these species were characterized by infrared spectroscopy, 1D and 2D solid state NMR, elemental analysis and molecular models obtained by using silsesquioxanes. While a mixture of several surface species, the resulting material displays high activity in the olefin metathesis.     

Continous gradient temperature Raman Spectroscopy identifies flexible sites in proline and alanine peptides

Continuous gradient temperature Raman spectroscopy (GTRS) applies the temperature gradients utilized in differential scanning calorimetry (DSC) to Raman spectroscopy, providing a straightforward technique to identify molecular rearrangements that occur near phase transitions. Herein we apply GTRS and DSC to the solid dipeptides Ala-Pro, Pro-Ala, and the mixture Ala-Pro/Pro-Ala 2:1. A simple change in residue order resulted in dramatic changes in thermal stability and properties. Characteristic Pro vibrations were observed at ∼75 °C higher temperature in Pro-Ala than Ala-Pro. The appearance/disappearance of characteristic vibrational modes with increasing temperature showed that a double peak in the Ala-Pro major phase transition (174–184 °C) was due to a gauche to anti 165° rotation of H₃CC*NH₃ about C*. CH₂ rocking and wagging frequencies present in Pro-Ala were not observed in Ala-Pro. For Ala-Pro, the Ala ⁺NH_3, and Pro COO⁻ sites were flexible whereas the Pro ring moiety was not; since the OCN (C)₂ amide bond is planar the CNC moiety keeps the Pro ring rigid. For Pro-Ala, CH₂ sites in the Pro ring were flexible and the OCNH amide bond is perpendicular to the Pro ring. Since the mass of the Pro ring is significantly larger than the mass of the flexible Ala ⁺NH₃ moiety, Pro-Ala absorbs more thermal energy, corresponding to a higher phase transition temperature (240–260 °C). Ala-Pro, Pro-Ala, and Ala-Pro/Pro-Ala 2:1 exhibited α-helix, β-sheet, α-helix secondary structure conformations, respectively.     

An improved,efficient route to 2,2-difluoroethenylbenzenes

Treatment of vinylidene fluoride with tert-BuLi at ?115 °C gave a solution of [F₂CCHLi]. Addition of Bu₃SnCl to this lithium reagent at ?110 °C gave an 88% isolated yield of F₂CCHSnBu₃. Reaction of F₂CCHSnBu₃ with substituted aryl iodides under Stille-Liebeskind conditions [Pd(PPh₃)₄/Cu(I)I] at room temperature afforded the 2,2-difluoroethenylbenzines in good yield. In the absence of the Cu(I)I co-catalyst, no reaction occurred. This work provides the most efficient route for the conversion of aryl halides to 2,2-difluorostyrenes.     

Raman spectroscopic study of CuO–V2O5–P2O5–CaO glass system

In order to evidence the structural changes induced by CuO and V₂O₅ in the phosphate glass network and their modifier or former role, x(CuO·V₂O₅)(100 − x)[P₂O₅·CaO] glass system was prepared and investigated using Raman spectroscopy (0 ≤ x ≤ 40 mol%).Raman spectra of the studied glasses present the specific bands of the phosphate glasses at low concentration of transition metal (TM) ions, but at higher concentration (x > 7 mol%) a strong depolymerization of the phosphate network appears; non-bridging oxygen atoms are involved in VOP and CuOP bonds and new short units are formed. For a high concentration of V₂O₅ (x > 10 mol%) the Raman bands of V₂O₅ prevail in the spectra; this fact suggests that vanadium oxide imposes its structural units in the network acting thus as a network glass former.2D correlation analysis was also applied for the concentration-dependent Raman spectra in order to verify the assignments of the vibration modes and to find correlations in the changes induced by TM ions content. 2D correlation maps indicate a good correlation between the bands at ∼705 cm⁻¹ assigned to POP stretching vibration and at ∼1175 cm⁻¹ assigned to PO₂ groups which suggest the depolymerization of the phosphate network. The correlation between the 1270 cm⁻¹ and 930 cm⁻¹ bands also suggests that V₂O₅ oxide is responsible for PO bonds breaking and POV formation.     

Olefin metathesis for metal incorporation: Preparation of conjugated ruthenium-containing complexes and polymers

Olefin Metathesis for Metal Incorporation (OMMI) was used for the stoichiometric attachment of ruthenium to both small and large polyenes. The dinuclear complexes (PCy₃)₂C1₂RuCH(CHCH)_nCHRu(PCy₃)₂Cl₂ (n = 1, 2), were prepared by reacting 2 equiv. of the Grubbs first-generation catalyst (PCy₃)₂C1₂Ru(CHPh)) with 1 equiv. of the appropriate polyene (1,3,5-hexatriene for n = 1 and 1,3,5,7-octatetraene for n = 2). Use of excess hexatriene led to the formation of the monoruthenium complex (PCy₃)₂C1₂RuCHCH CHCHCH₂. The mono- and di-ruthenium complexes exhibited marked differences in their spectroscopic and electrochemical properties, in addition to their Z–E isomerization rates. Nucleophilic attack of PCy₃ on the end CH₂ of the mono complex was observed, leading to both isomerization and phosphonium products. Extending the OMMI strategy to the second-generation catalyst was also done, despite the reduced initiation rate. The more reactive catalyst (H₂IMes)RuCl₂(CHPh)(3-bromopyridine)₂ allowed for ruthenium incorporation into polyacetylene, leading to the formation of polymers and oligomers with high ruthenium content.     

X-ray diffraction,spectroscopic (IR,Raman) and DSC studies of bis(betainium) p-toluenesulfonate monohydrate crystal

Bis(betainium) p-toluenesulfonate monohydrate (abbreviated as BBTSH) was studied at various temperatures by X-ray diffraction, differential scanning calorimetry and vibrational spectroscopy methods. DSC curves of BBTSH show a peak at about 349 K which corresponds to water escape from the crystal, and reveal the “cold crystallization” phenomenon. BBTSH crystallizes in the P2₁/c space group of monoclinic system. After heating above 349 K the compound dehydrates, the crystal system changes to triclinic, the monocrystalline samples become non-merohedral twins. The BBTSH crystal comprises p-toluenesulfonic anions, monoprotonated betaine dimers and water molecules. Three kinds of hydrogen bonds are present in the crystal: strong, asymmetric and almost linear OH⋯O hydrogen bond (R(O⋯O) = 2.463(2) Å), weak O_wH⋯O hydrogen bonds (R(O_w⋯O) = 2.820(2) − 2.822(2) Å) and weak CH⋯O hydrogen bonds (R(C⋯O) = 3.295(2) − 3.416(2) Å). The ν_aOHO vibration of the strongest hydrogen bond in the crystal gives rise to an intense broad absorption with numbers of transmission windows in the low wavenumber region of the infrared spectra. Coupling between νCO stretching vibrations of two COO groups of the betaine dimer was detected. The process corresponding to the loss of water is accompanied by the breakage of strong OH⋯O hydrogen bonds in betaine dimers and rearrangement inside half of the betaine dimers. This rearrangement results in formation of the new betaine dimers with OH∙∙∙O hydrogen bond of similar strength as corresponding bond in the hydrated form (BBTSH).     

Structure of the complex of dimethylphenyl betaine with dichloroacetic acid studied by X-ray diffraction,DFT calculations,infrared and Raman spectra

The structure of the complex of dimethylphenyl betaine (DMPB) with dichloroacetic acid (DCA) (1) has been investigated by X-ray diffraction, FTIR and Raman spectroscopy, and B3LYP/6-311 + + G(d,p) calculations. The crystal is monoclinic, space group P2₁. The acid is connected with betaine through the OH⋯O hydrogen bond of 2.480(2) Å. In the optimized structure the short, asymmetric O⋯O distance is 2.491 Å. FTIR spectrum shows a broad absorption in the 1500–400 cm⁻¹ region characteristic of very short OH⋯O hydrogen bond caused by Fermi resonance between νOH and overtones of δOH and γOH. In the Raman spectrum this broad absorption is not observed. The potential energy distributions (PED) were used for the assignments of IR and Raman frequencies in the experimental and calculated spectra. The FTIR and Raman spectra of the crystal complex are consistent with the X-ray results.     

Reaction of isocyanides with iminophosphorane-based carbene ligands: Synthesis of unprecedented ketenimine–ruthenium complexes

The RuC bond of the bis(iminophosphorano)methandiide-based ruthenium(II) carbene complexes [Ru(η⁶-p-cymene)(κ²-C,N-C[P{NP(O)(OR)₂}Ph₂]₂)] (R = Et (1), Ph (2)) undergoes a C–C coupling process with isocyanides to afford ketenimine derivatives [Ru(η⁶-p-cymene)(κ³-C,C,N-C(CNR′)[P{NP(O)(OR)₂}Ph₂]₂)] (R = Et, R′ = Bz (3a), 2,6-C₆H₃Me₂ (3b), Cy (3c); R = Ph, R′ = Bz (4a), 2,6-C₆H₃Me₂ (4b), Cy (4c)). Compounds 3–4a–c represent the first examples of ketenimine–ruthenium complexes reported to date. Protonation of 3–4a with HBF₄ · Et₂O takes place selectively at the ketenimine nitrogen atom yielding the cationic derivatives [Ru(η⁶-p-cymene)(κ³-C,C,N-C(CNHBz)[P{NP(O)(OR)₂}Ph₂]₂)][BF₄] (R = Et (5a), Ph (6a)).     

Infrared spectra and UV-induced photochemistry of methyl aziridine-2-carboxylate isolated in argon and xenon matrices

Methyl aziridine-2-carboxylate (MA2C) has been isolated in low temperature argon and xenon matrices and its structure and photochemistry were studied by FTIR spectroscopy. The reactant as well as the main photoproducts were characterized by comparison of their experimental IR spectra with spectra calculated at the DFT(B3LYP)/6-311++G(d,p) level. The theoretical calculations predicted the existence of two low energy MA2C conformers, differing by the orientation of the OCCN dihedral angle. Both conformers were identified in the studied matrices. Both narrowband tunable and broadband UV irradiations of matrix-isolated MA2C yielded isomerization photoproducts resulting from cleavage of the CC and weakest CN bonds of the aziridine ring. Irradiation with UV laser-light at λ = 235 nm resulted in the formation of the E isomer of methyl 2-(methylimino)-acetate (MMIA) and the Z isomer of methyl 3-iminopropanoate (M3IP). Subsequent irradiation at 290 nm led to observation of new bands resulting from E → Z isomerization of MMIA, while bands due to M3IP remained unchanged. The photoproduced Z isomer of MMIA could be subsequently consumed upon higher-wavelength irradiation (λ = 330 nm). The initially produced MMIA conformer was found to obey the nonequilibrium of excited rotamers (NEER) principle. No photoproducts resulting from the cleavage of the strongest CN bond of the MA2C aziridine ring were observed, nor that of methyl 3-aminoacrylate (M3AA), which could in principle be obtained also by cleavage of the weakest CN bond of the MA2C aziridine ring, but would imply a different H-atom migration simultaneous with the ring opening process. These results indicate that both the differential electronic characteristics of the CN bonds of substituted aziridine rings and the type of required H-atom migration are major factors in determining the specific photochemistries of substituted aziridines. Photofragmentation reactions of MA2C were also observed, through identification of various related products, e.g., acetonitrile, methanol, methane, CO and CO₂.     

‘Pincer’ pyridyl- and bipyridyl-N-heterocyclic carbene analogues of the Grubbs’ metathesis catalyst

The ‘pincer’ pyridine-dicarbene and bipyridyl-carbene ruthenium benzylidene complexes, Ru(C–N–C)Cl₂(CHPh) and Ru(C–N–N)Cl₂(CHPh), (C–N–C) = 2,6-bis(DiPP-imidazol-2-ylidene)pyridine, (C–N–N) = (DiPP-imidazol-2-ylidene)bipyridine, have been prepared and characterised by spectroscopic and diffraction methods. They exhibit moderate metathesis activity. Non-symmetrical linear tridentate ether-functionalised N-heterocyclic carbene pro-ligands are also described.     

Sulfonate group modified Ni catalyst for highly efficient liquid-phase selective hydrogenation of bio-derived furfural

A simple and highly efficient Ni catalyst was synthesized and showed excellent catalytic performance for selectively liquid-phase hydrogenation of furfural to furfuryl alcohol or tetrahydrofurfuryl alcohol.     

Reaction of the RuTp(PR3)Cl fragment with alkynols: Formation of carbene,vinylidene, allenylidene,and carbyne complexes

The reaction of RuTp(COD)Cl (1) with PR₃ (PR₃ = PPh₂ⁱPr, PⁱPr₃, PPh₃) and propargylic alcohols HCCCPh₂OH, HCCCFc₂OH (Fc = ferrocenyl), and HCCC(Ph)MeOH has been studied.In the case of PR₃ = PPh₂ⁱPr, PⁱPr₃ and HCCCPh₂OH, the 3-hydroxyvinylidene complexes RuTp(PPh₂ⁱPr)(CCHC(Ph)₂OH)Cl (2a) and RuTp(PⁱPr₃)(CCHC(Ph₂)OH)Cl (2b) were isolated.With PR₃ = PPh₂ⁱPr and HCCCFc₂OH as well as with PR₃ = PPh₃ and HCCCPh₂OH dehydration takes place affording the allenylidene complexes RuTp(PPh₂ⁱPr)(CCCFc₂)Cl (3b) and RuTp(PPh₃)(CCCPh₂)Cl (3c).Similarly, with PPh₂ⁱPr and HCCC(Ph)MeOH rapid elimination of water results in the formation of the vinylvinylidene complex RuTp(PPh₂ⁱPr)(CCHC(Ph)CH₂)Cl (4).In contrast to the reactions of the RuTp(PR₃)Cl fragment with propargylic alcohols, with HCC(CH₂)_nOH (n = 2, 3, 4, 5) six-, and seven-membered cyclic oxycarbene complexes RuTp(PR₃)(C₄H₆O)Cl (5), RuTp(PR₃)(C₅H₈O)Cl (6), and RuTp(PR₃)(C₆H₁₀O)Cl (7) are obtained. On the other hand, with 1-ethynylcyclohexanol the vinylvinylidene complex RuTp(PPh₂ⁱPr)(CCHC₆H₉)Cl (8) is formed. The reaction of the allenylidene complexes 3a–c with acid has been investigated. Addition of CF₃COOH to a solution of 3a–c resulted in the reversible formation of the novel RuTp vinylcarbyne complexes [RuTp(PPh₂ⁱPr)(C–CHCPh₂)Cl]⁺ (9a), [RuTp(PPh₂ⁱPr)(C–CHCFc₂)Cl]⁺ (9b), and [RuTp(PPh₃)(C–CHCPh₂)Cl]⁺ (9c). The structures of 3a, 3b, and 5b have been determined by X-ray crystallography.     

Comment on the possible role of the reaction H+H2O→H2+OH in the radiolysis of water at high temperatures

In a recent paper (Radiation Physics and Chemistry, 2005, vol. 74, pp. 210) it was suggested that the anomalous increase of molecular hydrogen radiolysis yields observed in high-temperature water is explained by a high activation energy for the reaction H+H₂O→H₂+OH. In this comment we present thermodynamic arguments to demonstrate that this reaction cannot be as fast as suggested. A best estimate for the rate constant is 2.2×10³ M⁻¹ s⁻¹ at 300 °C. Central to this argument is an estimate of the OH radical hydration free energy vs. temperature, ΔG_hyd(OH)=0.0278t−18.4 kJ/mole (t in °C, equidensity standard states), which is based on analogy with the hydration free energy of water and of hydrogen peroxide.     

Nitrogen- and oxygen-bridged bidentate phosphaalkene ligands

An overview is given on synthesis and structures of new bidentate phosphaalkene ligands [(RMe₂Si)₂CP]₂E (E = O, NR, N^?) and (RMe₂Si)₂CPN(R′)PR′′₂. Exceptional properties of these ligands, extending beyond predictable properties of phosphaalkenes are: (i) the NSi bond cleavage of [(iPrMe₂Si)₂CP]₂NSiMe₃ with Au^I and Rh^I chloro complexes under mild conditions leading to binuclear complexes of the 6π-delocalised imidobisphosphaalkene anion [(iPrMe₂Si)₂CP]₂N^?, and (ii) the chlorotropic formation of molecular 1:2 Pd^II and Pt^II metallochloroylid complexes with novel ylid-type ligands [(RMe₂Si)₂CP(Cl)N(R)PR₂]^?, and the transformation of a P-platina-P-chloroylid complex into a C-platina phosphaalkene by intramolecular chlorosilane elimination. Properties of the heavier congeners [(RMe₂Si)₂CP]₂E (E = S, Se, Te, PR, P^?, As^?) and (RMe₂Si)₂CPEPR′′₂ (E = S, Se, Te) are also described.     

Concentration dependent Raman study of 1,4-diethynylbenzene on gold nanoparticle surfaces

Concentration dependent adsorption behaviors of 1,4-diethynylbenzene (DEB) on gold nanoparticle surfaces have been investigated by means of surface-enhanced Raman scattering (SERS). The spectral features including the multiple peaks in the ν(CC)_bound stretching region were found to vary as the bulk concentration of DEB in gold nanoparticles. At a low concentration of 10⁻⁶ M, only the multiple ν(CC)_bound band was conspicuous at ∼2000 cm⁻¹ and the free CC stretching band was barely detected in the SERS spectra. When the bulk concentration was increased, the ν(CC)_free band became prominent at ∼2104 cm⁻¹. These splitting bands may provide the evidence that DEB is adsorbed on gold mainly through one of the two acetylene groups with the other CC groups being pendent with respect to the gold surface. Ab initio density functional theory (DFT) calculations of DEB were performed to check the vibrational assignment.