Rate Constants for the Gas‐Phase Reactions of Ozone and Nitrate Radicals with the Sesquiterpenes: Valencene and Farnesol

Sesquiterpenes are constituents of a variety of essential oils that are used in flavorings, perfumes, personal care, and cleaning products. Two sesquiterpenes that are commonly used as indoor fragrances are valencene and farnesol. Knowing the reaction rate constants of these chemicals with ozone (O₃) and nitrate radical () is an important factor in determining their fate indoors. In this study, the bimolecular rate constants of , , , and were measured using the relative rate technique at 297 ± 3 K and 1 atm total pressure. Using the rate constants reported here and measured/modeled indoor concentrations of O₃ and (20 ppb and 1 ppt, respectively), pseudo–first‐order‐rate lifetimes , , , and were determined.     

Kinetics of the Gas‐Phase Elimination Reaction of Benzyl Chloroformate and Neopentyl Chloroformate

The gas‐phase eliminations of benzyl chloroformate (475–523 K, 31–103 Torr) and neopentyl chloroformate (563–622 K, 37–70 Torr), in a deactivated static reaction vessel, and in the presence of a free radical suppressor, are homogeneous, unimolecular, and follow a first‐order rate law. The rate coefficients are expressed by the following Arrhenius equations: Benzyl chloroformate Neopentyl chloroformate Formation of neopentyl chloride: Formation of 2‐methylbutenes: The derived kinetic and thermodynamic parameters for benzyl chloroformate decomposition indicate the reaction proceeds through a concerted four‐membered cyclic transition state to give benzyl chloride and CO₂ gas. Neopentyl chloroformate undergoes a parallel reaction, where neopentyl chloride formation may arise from a polar‐concerted four‐membered cyclic transition state, whereas the mixture of olefins, 2‐methyl‐2‐butene, and 2‐methyl‐1‐butene appears to be produced from a carbene intermediate. This intermediate seems to be originated from a concerted five‐membered cyclic transition state of the neopentyl substrate.     

Experimental and Kinetic Modeling Study of Methanol Ignition and Oxidation at High Pressure

A detailed chemical kinetic model for oxidation of CH₃OH at high pressure and intermediate temperatures has been developed and validated experimentally. Ab initio calculations and Rice–Ramsperger–Kassel–Marcus/transition state theory (RRKM/TST) analysis were used to obtain rate coefficients for , , , and . The experiments, involving CH₃OH/O₂ mixtures diluted in N₂, were carried out in a high‐pressure flow reactor at 600–900 K and 20–100 bar, varying the reaction stoichiometry from very lean to fuel‐rich conditions. Under the conditions studied, the onset temperature for methanol oxidation was not dependent on the stoichiometry, whereas increasing pressure shifted the ignition temperature toward lower values. Model predictions of the present experimental results, as well as rapid compression machine data from the literature, were generally satisfactory. The governing reaction pathways have been outlined based on calculations with the kinetic model. Unlike what has been observed for unsaturated hydrocarbons, the oxidation pathways for CH₃OH under the investigated conditions were very similar to those prevailing at higher temperatures and lower pressures. At the high pressures, the modeling predictions for onset of reaction were particularly sensitive to the reaction.     

Additivity in kramers pairs symmetry: Multiplets with up to four unpaired electrons

Many fermions Kramers pairs formalism is considered from the prospective of the sum of individual single fermion time‐reversal operators. The obtained many fermions “pseudo Kramers pairs operator” ( ), as well as its square ( ), have formally the same structure as the many fermion spin operators and . Nevertheless, the shape of eigenfunctions with respect to and is different. Herein all Kramers adapted eigenfunctions of for cases of up to four unpaired fermions are compiled, and their properties with respect to further advocated. It will be shown that degeneracy of the multiplets recovers the proper behavior with respect to Pascal's triangle. A projection operator for obtaining the “high spin” Kramers adapted eigenfunctions is suggested. Noncommutation of with spin and angular momentum operators and degeneracy is discussed at last. © 2016 Wiley Periodicals, Inc.     

Theoretical prediction of the optical rotation of chiral molecules in ordered media: A computational study of (Ra)‐1,3‐dimethylallene, (2R)‐2‐methyloxirane,and (2R)‐N‐methyloxaziridine

A theoretical procedure has been developed and implemented to calculate the optical rotation of chiral molecules in ordered phase via origin‐independent diagonal components , of the optical activity tensor and origin‐independent components , for , of the mixed electric dipole‐electric quadrupole polarizability. Origin independence was achieved by referring these tensors to the principal axis system of the electric dipole dynamic polarizability at the same laser frequency ω. The approach has been applied, allowing for alternative quantum mechanical methods based on different gauges, to estimate near Hartree–Fock values for three chiral molecules, (2R)‐N‐methyloxaziridine C₂NOH₅, (2R)‐2‐methyloxirane (also referred to as propylene oxide) C₃OH₆, and ( )‐1,3‐dimethylallene C₅H₈, at two frequencies. The theoretical predictions can be useful for an attempt at measuring correspondent experimental values in crystal phase. © 2015 Wiley Periodicals, Inc.     

Dealing with the shifted and inverted Tietz–Hua oscillator potential using the J‐matrix method

The tridiagonal J‐matrix approach has been used to calculate the low and moderately high‐lying eigenvalues of the rotating shifted Tietz–Hua (RSTH) oscillator potential. The radial Schrödinger equation is solved efficiently by means of the diagonalization of the full Hamiltonian matrix, with the Laguerre or oscillator basis. Ro–vibrational bound state energies for 11 diatomic systems, namely , , , NO, CO, , , , , , and NO⁺, are calculated with high accuracy. Some of the energy states for molecules are reported here for the first time. The results of the last four molecules have been introduced for the first time using the oscillator basis. Higher accuracy is achieved by calculating the energy corresponding to the poles of the S‐matrix in the complex energy plane using the J‐matrix method. Furthermore, the bound states and the resonance energies for the newly proposed inverted Tietz–Hua IRSTH‐potential are calculated for the H₂‐molecule with scaled depth. A detailed analysis of variation of eigenvalues with n, quantum numbers is made. Results are compared with literature data, wherever possible. © 2015 Wiley Periodicals, Inc.     

Low‐energy structures of benzene clusters with a novel accurate potential surface

The benzene‐benzene (Bz‐Bz) interaction is present in several chemical systems and it is known to be crucial in understanding the specificity of important biological phenomena. In this work, we propose a novel Bz‐Bz analytical potential energy surface which is fine‐tuned on accurate ab initio calculations in order to improve its reliability. Once the Bz‐Bz interaction is modeled, an analytical function for the energy of the clusters may be obtained by summing up over all pair potentials. We apply an evolutionary algorithm (EA) to discover the lowest‐energy structures of clusters (for ), and the results are compared with previous global optimization studies where different potential functions were employed. Besides the global minimum, the EA also gives the structures of other low‐lying isomers ranked by the corresponding energy. Additional ab initio calculations are carried out for the low‐lying isomers of and clusters, and the global minimum is confirmed as the most stable structure for both sizes. Finally, a detailed analysis of the low‐energy isomers of the n = 13 and 19 magic‐number clusters is performed. The two lowest‐energy isomers show S₆ and C₃ symmetry, respectively, which is compatible with the experimental results available in the literature. The structures reported here are all non‐symmetric, showing two central Bz molecules surrounded by 12 nearest‐neighbor monomers in the case of the five lowest‐energy structures. © 2015 Wiley Periodicals, Inc.     

Quantum control of electron‐proton symmetry breaking in dissociative ionization of H2 by intense laser pulses

Forward and backward electron/proton ionization/dissociation spectra from one‐dimensional non‐Born‐Oppenheimer H₂ molecule exposed to ultrashort intense laser pulses ( W/cm², λ = 800 nm) have been computed by numerically solving the time‐dependent Schrödinger equation. The resulting above‐threshold ionization and above‐threshold dissociation spectra exhibit the characteristic forward‐backward asymmetry and sensitivity to the carrier‐envelope phase (CEP), particularly for high energies. A general framework for understanding CEP effects in the asymmetry of dissociative ionization of H₂ has been established. It is found that the symmetry breaking of electron‐proton distribution with π periodic modulation occurs for all CEPs except for ( integer) and the largest asymmetry coming from the CEP of . At least one of the electron and proton distributions is asymmetric when measured simultaneously. Inspection of the nuclear and electron wave packet dynamics provides further information about the relative contribution of the gerade and ungerade states of to the dissociation channel and the time delay of electrons in asymmetric ionization. © 2014 Wiley Periodicals, Inc.     

Ruthenium(II) complexes bearing pyridine‐based tridentate and bidentate ligands: catalytic activity for transfer hydrogenation of aryl ketones

Ru(II) complexes of the general formula [RuCl₂(′′)(L)] (1: ′N = N_b, L = MeOH; 2: ′N = N_b, L = CH₃CN; 3: ′N = N_d, L = CH₃CN; 4: ′N = N_p, L = CH₃CN), [Ru(p‐cymene)(_a–b)Cl]Cl (5a: N N_a = 2,2′‐bipyridine; 5b: N N_b = 4,4′‐dimethyl–2,2′‐bipyridine), [Ru(′′)(_a–b)Cl]Cl (6a: ′N = N_b, _a = 2,2′‐bipyridine; 6b: ′N = N_b, _b = 4,4′‐dimethyl‐2,2′‐bipyridine; 7a: ′N = N_d, _a = 2,2′‐bipyridine; 7b: ′N = N_d, _b = 4,4′‐dimethyl‐2,2′‐bipyridine; 8a: ′N = N_p, _a = 2,2′‐bipyridine; 8b: ′N = N_p, _b = 4,4′‐dimethyl‐2,2′‐bipyridine) and [Ru(′′)(_a)Cl]BF₄ (9a: ′N = N_b; _a = 2,2′‐bipyridine) were synthesized from the corresponding [RuCl₂(p‐cymene)]₂ dimer, ′′ and _a–b ligands. The compounds were characterized by elemental analysis, IR and NMR. Complex 9a was studied by X‐ray diffraction, confirming its cationic‐mononuclear [RuCl(_bb)(_a)]⁺ nature. The synthesized Ru(II) complexes (1–8) were employed as catalysts for the transfer hydrogenation of ketones to secondary alcohols in the presence of KOH using 2‐propanol as a hydrogen source at 82°C. The rates of the transfer hydrogenation reactions strongly depended on the type of and ancillary ligands. Copyright © 2012 John Wiley & Sons, Ltd.     

Reliability of Orientational Order Parameters Determined from Two‐dimensional X‐ray Diffraction Patterns: A Simulation Study

The orientational order parameter is one of the most important quantities to describe the degree of long‐range orientational ordering of liquid crystals. There are several approaches to experimentally measure this order parameter of liquid crystalline phases but every method includes substantial simplifications and assumptions. We present a simulation‐based approach to elucidate the reliability of the method of Davidson, Petermann and Levelut to measure via 2D X‐ray experiments. We have found that this method slightly underestimates by an absolute value of only 0.05 and thus provides reliable measures of by X‐ray diffraction.     

Computational study of basis set and electron correlation effects on anapole magnetizabilities of chiral molecules

In the presence of a static, nonhomogeneous magnetic field, represented by the axial vector at the origin of the coordinate system and by the polar vector , assumed to be spatially uniform, the chiral molecules investigated in this paper carry an orbital electronic anapole, described by the polar vector . The electronic interaction energy of these molecules in nonordered media is a cross term, coupling and via , one third of the trace of the anapole magnetizability a_αβ tensor, that is, . Both and W^BC have opposite sign in the two enantiomeric forms, a fact quite remarkable from the conceptual point of view. The magnitude of predicted in the present computational investigation for five chiral molecules is very small and significantly biased by electron correlation contributions, estimated at the density functional level via three different functionals. © 2016 Wiley Periodicals, Inc.     

Synthesis of gradient copolysiloxanes by simultaneous copolymerization of cyclotrisiloxanes and mechanism for kinetics inverse between anionic and cationic ring‐opening polymerization

Trifluoropropylmethylsiloxane–phenylmethylsiloxane gradient copolysiloxanes were synthesized by anionic and cationic ring‐opening polymerization (ROP) of 1,3,5‐tris(trifluoropropylmethyl)cyclotrisiloxane ( ) and phenylmethylcyclotrisiloxane ( ). The analysis of reactivity ratios revealed that the reactivity of toward anionic ROP was higher than that of ; however, exhibited lower reactivity compared with during the cationic ROP. AB and BAB type gradient copolymers were obtained because of a difference in the reactivity of the monomers. The microstructure of copolymers was characterized by ²⁹Si NMR spectroscopy, gel permeation chromatography, and differential scanning calorimetry. Furthermore, the mechanism for kinetics inverse of copolymerization was proposed based on the results of the optimized molecular configuration. © 2015 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2016 , 54, 835–843     

Comparative Study of Hard‐ and Soft‐Modeling Algorithms for Kinetic Data Processing

This article critically compares the efficacy of three algorithms, namely Alternating Least‐squares Multi Curve Resolution (ALS‐MCR), Hard Modeling Alternating Least‐squares (HM‐ALS), and classical Hard Modeling Multi Curve Resolution (HM‐MCR) in finding the true values of rate constants associated with a kinetic model. Simulated experiments on the simple system () indicate that soft‐modeling ALS‐MRC methodology, which is subject only to linear constraints, does not ensure that experimental responses are correctly deconvolved, thus preventing further calculations to determine the true rate constants. Inclusion of the kinetic model in the ALS scheme, which gives rise to the HM‐ALS methodology, was found to yield a correct assessment of the rate coefficients but had a large computational cost. Numerical experiments employing a more complex model () were also carried out, mainly to evaluate strategies for performing efficient searches on multidimensional multimodal least‐squares surfaces using HM‐ALS and HM‐MCR. This study again revealed the efficiency and reliability of classical HM‐MCR methods. Results from simulations were corroborated by analysis of data from an experimental study of chromate reduction by hydrogen peroxide; the mechanism of which is similar in complexity to those considered in simulations. The present work suggests that HM‐MCR algorithms implementing a multiminimum search strategy are the method of choice for analyzing two‐dimensional kinetic data.     

Geometry of the canonical Van Vleck transformation

Bloch's transformation from the zeroth‐order space for a perturbation problem to the corresponding space of exact eigenvectors, was found as a geometrically defined alternative to the algebraically constructed Van Vleck transformation. Klein's theorem of uniqueness transferred some of this geometrical interpretation to its canonical form . Quite recently Kvaal has taken a large step further by writing as a product of commuting planar rotations, obtained by describing and in terms of certain principal vectors and canonical angles. Kvaal's approach is now developed further, using a new commutation relation which simplifies algebraic manipulations substantially. It allows for a simple definition of an operator for the angle between and which has Kvaal's vectors and angles as eigenvectors and eigenvalues. Klein's theorem is refined in various ways. The impact of the approach on a number of previous results is considered. © 2015 Wiley Periodicals, Inc.     

Energy decomposition analysis of cation–π, metal ion–lone pair,hydrogen bonded,charge‐assisted hydrogen bonded,and π–π interactions

This study probes the nature of noncovalent interactions, such as cation–π, metal ion–lone pair (M–LP), hydrogen bonding (HB), charge‐assisted hydrogen bonding (CAHB), and π–π interactions, using energy decomposition schemes—density functional theory (DFT)–symmetry‐adapted perturbation theory and reduced variational space. Among cation–π complexes, the polarization and electrostatic components are the major contributors to the interaction energy (IE) for metal ion–π complexes, while for onium ion–π complexes ( , , , and ) the dispersion component is prominent. For M–LP complexes, the electrostatic component contributes more to the IE except the dicationic metal ion complexes with H₂S and PH₃ where the polarization component dominates. Although electrostatic component dominates for the HB and CAHB complexes, dispersion is predominant in π–π complexes.Copyright © 2015 Wiley Periodicals, Inc.     

A Visible‐Light‐Triggered Conformational Diastereomer Photoswitch in a Bridged Azobenzene

Ketal‐substituted bridged azobenzenes have been synthesized; these display a symmetrical boat conformation with the ketal in pseudo‐equatorial positions. These bridged Z‐azobenzenes (Z₁) readily photoisomerize to the E‐isomer as well as another Z‐conformer (Z₂) with ketal function on the pseudo‐axial position upon irradiation at 406 nm. The two diastereomeric conformers display distinct physicochemical characteristics. Spectroscopic and NMR investigations supported that interconversion of two conformers occurs via the E‐isomer, with good photochemical quantum yield (Φ =0.45±0.03, Φ =0.33±0.05, Φ =0.37±0.06 and Φ =0.36±0.04). The system shows high photostability and no thermal equilibrium between the two stable Z₁ and Z₂ conformers.     

Kinetics of the Antibody Recognition Site in the Third IgG‐Binding Domain of Protein G

Protein dynamics occurring on a wide range of timescales play a crucial role in governing protein function. Particularly, motions between the globular rotational correlation time ( ) and 40 μs (supra‐ window), strongly influence molecular recognition. This supra‐ window was previously hidden, owing to a lack of experimental methods. Recently, we have developed a high‐power relaxation dispersion (RD) experiment for measuring kinetics as fast as 4 μs. For the first time, this method, performed under super‐cooled conditions, enabled us to detect a global motion in the first β‐turn of the third IgG‐binding domain of protein G (GB3), which was extrapolated to 371±115 ns at 310 K. Furthermore, the same residues show the plasticity in the model‐free residual dipolar coupling (RDC) order parameters and in an ensemble encoding the supra‐ dynamics. This β‐turn is involved in antibody binding, exhibiting the potential link of the observed supra‐ motion with molecular recognition.     

Study of adiabatic connection in density functional theory with an accurate wavefunction for two‐electron spherical systems

An accurate semianalytic wavefunction is proposed for the Hookium and two‐electron atoms for varying strength of where is the strength parameter and is coulomb interaction between two electrons. The wavefunction leads to energies that are as accurate as those from the Coupled cluster singles and doubles (CCSD) calculations. Using this wavefunction, we construct the external potential such that the density of the system remains unchanged as is varied. The work thus gives a unified picture of adiabatic connection for these systems based on an easy to use wavefunction and complements the past investigations done in this direction. Using the potential obtained, we explicitly calculate the energy of the corresponding positive ions and show that the chemical potential—calculated as the difference between the energies of the two‐electron system and its positive ion—is equal to the experimental ionization energy and remains unchanged as is varied. Furthermore, using total energies of these systems as a function of , we provide a new perspective into a variety of hybrid functionals.     

Ritz variational calculation for the singly excited states of compressed two‐electron atoms

A detailed analysis on the effect of spherical impenetrable confinement on the structural properties of two‐electron ions in states has been performed. The energy values of 1sns [ ] ( ) states of helium‐like ions ( ) are estimated within the framework of Ritz variational method using explicitly correlated Hylleraas‐type basis sets. The correlated wave functions used here are consistent with the finite boundary conditions due to spherical confinement. A comparative study between the singlet and triplet states originating from a particular electronic configuration shows incidental degeneracy and the subsequent level‐crossing phenomena. The thermodynamic pressure felt by the ion inside the sphere pushes the energy levels toward continuum. Critical pressures for the transition to strong confinement regime (where the singly excited two‐electron energy levels cross the corresponding one‐electron threshold) as well as for the complete destabilization are also estimated.     

Extending the Domain‐Averaged Exchange‐Correlation Energies Within the Context of the MC‐QTAIM: Tracing Subtle Variations Induced by Isotope Substitution

Recently, it has been demonstrated that the domain‐averaged exchange‐correlation energies, V^xc, are capable of tracing the covalent character of atom–atom interactions unequivocally and thus pave the way for detailed bonding analysis within the context of the quantum theory of atoms in molecules (QTAIM) [M. García‐Revilla, E. Francisco, P. L. Popelier, A. Martín Pendás, ChemPhysChem 2013 , 14, 1211–1218]. Herein, the concept of V^xc is extended within the context of the newly developed multicomponent QTAIM (MC‐QTAIM). The extended version, , is capable of analyzing nonadiabatic wavefunctions and thus is sensitive to the mass of nuclei and can trace “locally” the subtle electronic variations induced by isotope substitution. To demonstrate this capability in practice, ab initio nonadiabatic wavefunctions for three isotopically substituted hydrogen cyanide molecules, in which the hydrogen nucleus was assumed to be a proton, deuterium, or tritium, were derived. The resulting wavefunctions were then used to compute and it emerged that for the hydrogen–carbon bond, the was distinct for each isotopic composition and varied in line with chemical expectations. Indeed, the introduction of paves the way for the investigation of vast numbers of structural and kinetic isotope effects within the context of the MC‐QTAIM.