PHOTOACOUSTIC SPECTRA OF SOME BIOLOGICAL MOLECULES BETWEEN 300 AND 130 nm

Photoacoustic spectra of the biological molecules thymine, adenine, tyrosine, ergosterol and polyadenylic acid were obtained in the 300-130 nm region of photon wavelength using synchrotron radiation as a light source. Photoacoustic measurements were performed with thin solid films of these molecules made by vacuum evaporation, except for polyadenylic acid whose thin films were made from the aqueous solution. It was found that the spectra exhibit absorption structures which are in good agreements with those found from conventional transmission measurements. Some of the spectra, however, exhibit a marked deviation from the transmission data in the region below 145 nm, which may be indicative of photon absorption with subsequent photoelectron emission.     

Eigenvector mapping: a method for discerning solvent effects on vibrational spectra

This paper reports a density functional theory (DFT) analysis of the adenine spectra in a hydrogen-bonding environment. We compare the theoretical vibrational spectra of 26 model systems in which water has been hydrogen bonded to adenine with the experimental frequencies of the solid state infrared spectra (150-1700 cm(-1)) of polycrystalline adenine and the experimental frequencies observed in matrix isolation spectra of adenine [J. Phys. Chem. 100 (1996) 3527]. The vibrational eigenvectors of adenine are compared by taking the dot product to determine how the normal modes of the 15-adenine atoms are affected by different hydrogen bonding geometries. Using the isolated adenine molecule as a reference permits a comparison of different calculated spectra in terms of the projections of various normal modes and the determination of the potential energy redistribution among normal modes. This method creates a map of the normal modes using the isolated adenine molecule as a reference. Improvement in agreement between the polycrystalline data and a model of adenine with four waters is most striking. The improvement in the fit between matrix isolation data and a model of adenine with a single water was not as dramatic as the fit seen for the polycrystalline data, but the fact that a single hydrogen-bonded water shifted the spectra of the model to a closer fit than that of isolated adenine is important. We call this method eigenvector mapping. The eigenvector mapping method can be used to extract the normal modes of a parent molecule from a solvent model system. The application of this method is important because it aids in the interpretation of complex molecular interactions in terms of the spectrum of an isolated molecule. The eigenvector mapping procedure will be shown to greatly improve the correspondence between the model and the experimental data.     

Functional Monomers and Polymers. CXXXVI. Effect of Metal Ions on the Interaction of Synthetic Nucleic Acid Analogs

The effect of metal ions on the conformation of thymine-containing poly-D-lysine was studied by CD spectra in aqueous solution. Of the metal ions studied, only copper(II) ion affected the conformation of nucleic acid analogs. Copper(II) ion also affected the specifically interacting system made up of thymine-containing poly-D-lysine and polyadenylic acid.     

Graft copolymers of nucleic acid bases on polyethyleneimine: Interaction of the polymers

Interactions of the graft copolymers of nucleic acid bases on polyethyleneimine with polynucleotides were studied. The backbone of the polymer is linear or branched polyethyleneimine. The nucleic acid bases are adenine and thymine. The polynucleotides used were polyadenylic acid (poly-A) and polyuridylic acid (poly-U). Interactions between these polymers were measured by ultraviolet (UV) absorption and the results were compared with the vinyl-type nucleic acid model polymer.     

Angle-dependent terahertz time-domain spectroscopy of amino acid single crystals

The measurement of absorption spectra using angle-dependent terahertz (THz) time-domain spectroscopy for amino acid single crystals of l-cysteine and l-histidine is reported for the first time. Linearly polarized THz radiation enables us to observe angle-dependent far-infrared absorption spectra of amino acid single crystals and determine the direction of the oscillating dipole of the molecules in the 20-100 cm(-1) range. By comparing the THz spectra of a single crystal and powder, we found that there was a clear hydrogen-bond peak in the crystal spectrum as a result of the larger hydrogen-bond network. The low-temperature THz spectra of amino acid microcrystals showed more intermolecular vibrational modes than those measured at room temperature. An ab initio frequency calculation of a single amino acid molecule was used to predict the intramolecular vibrational modes. The validity of the calculation models was confirmed by comparing the results with experimentally obtained data in the Raman spectral region.     

The use of two nematic solvents in the determination of molecular structure of systems providing deceptively simple spectra

The use of two liquid crystals as solvents in the determination of molecular structure has been demonstrated for systems which do not provide structural information from studies in a single solvent owing to the fact that the spectra are deceptively simple, with the result that all the spectral parameters cannot be derived with reasonable precision. The specific system studied was 2-(p-bromophenyl)-4,6-dichloropyrimidine, for which relative inter-proton discances have been determined from the proton NMR spectra in two nematic solvents.     

The synthesis of carboxymethyl derivatives of purines and pyrimidines and their condensation with naturally occurring macromolecules

1-Carboxymethylthymine, 1-carboxymethylcytosine and 9-carboxymethyladenine were obtained by the direct carboxymethylation of the appropriate bases. In addition a small amount of 3-carboxymethyladenine was obtained. 9-Carboxymethylhypoxanthine was obtained by deamination of 9-carboxymethyladenine. 1-Carboxymethyluracil, 1-carboxymethylthymine and 9-carboxymethyl-hypoxanthine were each condensed with protamine and with dextran to give water-soluble, base-substituted polymers. The 1-carboxymethylthymine-dextran showed a slow decrease in optical density at 268 nm in 2 × SSC at 20°, of 30%. This did not occur in 7M urea. 1-Carboxymethylthymine-dextran gave an additional hypochromic effect with polyadenylic acid in 2 × SSC at 4° or 14° of 13% and 9% respectively. The ratio of thymine: adenine residues at the point of maximum hypochromicity was 3:1. The other dextran derivatives did not show similar hypochromic effects. The 1-carboxy-methylthymine-protamine gave a precipitate with polyadenylic acid probably due to electrostatic interaction.     

Fluorescence as probe for transport and lateral order in vapor grown Langmuir-Blodgett(LB) multilayer-type single crystals of anthracene chromophores with fatty acid tails

Fluorescence spectra of anthracene moieties with fatty acid tails attached at the 2-position are reported for Langmuir-Blodgett(LB)-type multilayer configurations obtained as single crystals in the gas phase. These systems are considered the best ordered experimental model systems for chromophores with fatty acid tails arranged in the LB multilayer configuration. Closest agreement of the fluorescence spectrum with that of the unsubstituted anthracene crystal is found for the 4-(2-anthryl)-1-butanoic acid (2A4) crystal. Packing of the anthracene moieties is very similar in both crystals. Low-temperature spectra (10 K) reveal strong broadening of the peaks due to spatial disorder in the 2A4 crystal. 7-(2-Anthryl)-1-heptanoic acid (2A7) crystals and even more so actual 2A7 LB multilayers have less structured fluorescence spectra that extend further to lower energies. Picosecond time resolved fluorescence decay curves show exciton transport and trapping in low energy traps. Compressed ground state pairs with excimer-type spatial configurations are excited directly in the red (476 nm) to emit structureless excimer-type fluorescence.     

腺嘌呤与富马酸共晶体的太赫兹光谱分析

利用太赫兹时域光谱(THz-TDS)技术在室温下对腺嘌呤、富马酸及两者的共晶体进行测量, 实验结果显示腺嘌呤与富马酸共晶体在0.92、1.24、1.52 THz处有明显的吸收峰, 与腺嘌呤和富马酸不同, 表明共晶体物相结构不同于原料. 根据腺嘌呤分子氢键供体与受体的结构特点, 使用密度泛函理论(DFT)对腺嘌呤与富马酸三种可能的共晶体结构进行模拟. 结果显示其中一种可能的共晶体结构在0.89、1.16、1.41 THz处存在特征吸收峰, 与实验结果较好吻合. 由此判断腺嘌呤与富马酸共晶体氢键形成位置为腺嘌呤的氨基与富马酸其中一个羧酸的碳氧双键形成氢键, 而此羧酸的羟基与腺嘌呤六元环上的邻位氮原子形成第二处氢键. 本文还结合理论模拟的结果对腺嘌呤与富马酸共晶体的特征吸收峰对应的相关振动模式进行了归属.     

Fragmentation of singly charged adenine induced by neutral fluorine beam impact at 3 keV

The fragmentation scheme of singly charged adenine molecule (H(5)C(5)N(5)(+)) has been studied via neutral fluorine impact at 3 keV. By analyzing in correlation the kinetic energy loss of the scattered projectile F(-) produced in single charge transfer process and the mass of the charged fragments, the excitation energy distribution of the parent adenine molecular ions has been determined for each of the main dissociation channels. Several fragmentation pathways unrevealed in standard mass spectra or in appearance energy measurements are investigated. Regarding the well-known hydrogen cyanide (HCN) loss sequence, we demonstrate that although the loss of a HCN is the dominant decay channel for the parent H(5)C(5)N(5)(+) (m = 135), the decay of the first daughter ion H(4)C(4)N(4)(+) (m = 108) involves not only the HNC (m = 27) loss but also the symmetric breakdown into two dimers of HCN.     

聚腺嘌呤核苷酸在金电极上的吸附氧化

采用微电极循环伏安法和吸附转移溶出伏安法研究了单链多聚腺嘌呤核苷酸Poly(A)在金电极上的伏安行为。重点了考察了Poly(A)的吸附和氧化过程。发现Poly(A)分子在金电极表面能够形成多种状态的特性吸附。影响吸附态和吸附强度的主要因素是吸附电势, 吸附时间和溶液浓度。在负电位区, 随着吸附时间(t~s)的变化, Poly(A)分子在金电极表面发生不同状态的以腺嘌呤碱基为吸附位点的强吸附, 这种以腺嘌呤碱基吸附的Poly(A)分子能够在零伏附近给出很强的氧化电流峰和对应的还原峰。     

Investigations of the optical and EPR spectra for VO2+ in LiKSO4 crystals

The optical spectra and EPR spectra (characterized by the spin-Hamiltonian parameters g(//), g(perpendicular), A(//) and A(perpendicular)) for the molecular ion VO2+ in LiKSO4 crystals are calculated from two microscopic theory methods, one of which is the complete diagonalization (of energy matrix) method (CDM) and the other is the perturbation theory method (PTM). The calculated three optical absorption bands and four spin-Hamiltonian parameters from the two methods are not only close to each other, but also in reasonable agreement with the experimental values. It appears that both theoretical methods are effective in the explanation of optical and EPR spectra for 3d1 ions in crystals. The negative signs of hyperfine structure constants A(//) and A(perpendicular) for VO2+ in LiKSO4 crystals are also suggested from the calculations.     

Magnetic properties of single crystal alpha-benzoin oxime: An EPR study

The electron paramagnetic resonance (EPR) spectra of gamma irradiated single crystals of alpha-benzoinoxime (ABO) have been examined between 120 and 440 K. Considering the dependence on temperature and the orientation of the spectra of single crystals in the magnetic field, we identified two different radicals formed in irradiated ABO single crystals. To theoretically determine the types of radicals, the most stable structure of ABO was obtained by molecular mechanic and B3LYP/6-31G(d,p) calculations. Four possible radicals were modeled and EPR parameters were calculated for the modeled radicals using the B3LYP method and the TZVP basis set. Calculated values of two modeled radicals were in strong agreement with experimental EPR parameters determined from the spectra. Additional simulated spectra of the modeled radicals, where calculated hyperfine coupling constants were used as starting points for simulations, were well matched with experimental spectra.     

Theory of the infrared spectra of the hydrogen bond in molecular crystals

A general model for the vibrational interactions of the hydrogen bonds in molecular crystals is presented. The energy and the intensity distributions of the IR spectra of the 1-methylthymine and uracil crystals are correctly reproduced.     

Exciton self-trapping in tetrafluoro-dimethyl-aminoacridine single crystals

The UV-visible optical spectra of 1,2,3,4-tetrafluoro-7-(N,N)dimethyl-amino-acridine single crystals are reported. The results are discussed on the basis of the molecular transitions and crystal packing in the framework of the theory of molecular excitons under a fluctuating potential field due to dynamic disorder. A strong local geometry distortion is demonstrated by applying the Urbach rule to the absorption tails, which is the amplitude of the local potential fluctuation being larger than the intermolecular transfer energy. The lineshape and linewidth of the emission band and its temperature dependence give further evidence of exciton self-trapping.     

Effect of static and dynamic disorder on exciton mobility in oligothiophenes

The polarized optical absorption spectra of different quaterthiophene single crystals in the energy region of the exciton bands originating from the first molecular transition are reported as measured in the temperatures ranging from 7 to 140 K. The intrinsic higher mobility of the b-polarized 0-0 a(u) exciton both with respect to its replicas and to the a-polarized structures is demonstrated in high quality crystals at the lowest temperatures. The influence of structural disorder on mobility is discussed considering, for the different samples, the measured lineshape and linewidth of the absorption peaks, and the relative lineshift and intensity ratio between the 0-0 a(u) line and its first replica at the lowest temperature. The influence of dynamic disorder is discussed considering the lineshape and linewidth of the measured peaks as a function of temperature for both polarizations in the framework of the exciton-phonon coupling theory.     

叶状Cu（OH）2的合成及其向带有纳米孔的CuO的转化

通过乳液界面反应法,用以Span80(sorbitan monooleate)作为稳定剂的乳液体系控制合成了叶状Cu(OH)2单晶.通过热处理,可以得到表面有纳米孔的CuO,且保持了原有的叶状形貌.通过X射线衍射(XRD)、Fourier红外光谱(FTIR)、扫描电镜(SEM)和透射电镜(TEM)观测了其形貌和结构特征.实验结果表明,叶状Cu(OH)2为单晶,且沿[111]晶面定向生长.孔的形成是由于相转变过程中Cu(OH)2失去H2O分子所致.通过观测不同反应时间产物的形貌,深入探讨了叶状Cu(OH)2纳米结构的组装机理.整个组装过程是由能量高的颗粒状纳米粒子通过端部取向连接定向生长而得到能量相对较低的叶状结构.并且得到的CuO的紫外光谱相对于其块体材料发生了蓝移,显示出比较大的禁带宽度.     

Supersonic Jet/Time-of-flight mass spectrometry of adenine using nanosecond and femtosecond lasers

Mass spectra and ionization efficiencies of adenine were measured with nanosecond (15 ns) and femtosecond (500 fs) laser pulses at identical energy levels. A molecular ion is clearly observed in both spectra, but the efficiency is improved 10-fold when a femtosecond laser is used, indicating the distinct advantage of ultrashort laser pulses for multiphoton ionization of nucleobases in supersonic jet spectrometry.     

Infrared absorption and dichroism in monoclinic crystals: Adipic acid

We analyse the propagation of light in absorbing anisotropic single crystals and we propose a new method to calculate, without approximation, the absorption coefficients and dichroic ratios from experimental data of B_u modes of monoclinic crystals. We indicate how this method will be applied to the interpretation of intense bands in polarized IR spectra of adipic acid crystals.