Dendron arrays for the force-based detection of DNA hybridization events

Single-molecule force measurement methods have attracted increasing interest over recent years for the development of novel approaches for biomolecular screening. However, many of these developments are currently hindered by the available biomolecule surface attachment methods, in that it is still not trivial to create surfaces and devices with highly defined surface functionality and/or uniformity. Here we offer a new approach to address such issues based on the formation of dendron arrays. Through the measurement of forces between dendron surfaces functionalized with complementary DNA oligonucleotides, we observed several unique properties of the surfaces modified via this approach. The capability to record attractive or "jump-in" forces associated with molecular binding events is one of them. Additionally, these events occur in greater than 80% of measurements, and the forces are dependent on the number of complementary DNA bases of the associating strands while being insensitive to the measurement rate. Combined with a narrow distribution of both attractive forces and unbinding forces we suggest such functionalized surfaces offer a significant advance for fast and accurate force-based studies of oligonucleotide hybridization.     

The role of adsorption compression in nanocapillarity

Influence of adsorption compression on nanocapillarity is discussed. Kelvin's equation for a compressible liquid is written in a form that takes into account not only Laplace's pressure, but also adsorption compression. This leads to a simple analytical equation for pressure in nanocapillaries. It is shown that the ratio of Laplace's pressure to the adsorption compression pressure determines different types of nanocapillary behavior. When the Laplace pressure dominates, it results in classical capillarity that is well studied and understood. There is an intermediate range where Laplace's pressure is partially or fully compensated by adsorption compression, and the resulting pressure in a capillary is an interplay between attraction to walls and repulsions from neighboring molecules in compressed adsorbed fluid. If the adsorption compression pressure dominates, it results in inversion of capillary pressure and the fluid adsorbed in the nanocapillary presses on walls from inside. This phenomenon has been observed experimentally for fluids in nanoporous solids; in particular, high-precision measurements have shown significant expansion of nanoporous adsorbents loaded with various fluids. It is also shown that oscillatory adhesion forces and internal forces in nanoporous adsorbents have a common thermodynamic origin and can be discussed in the framework of adsorption compression mechanisms.     

Atomic force microscopy study of the interaction between adsorbed poly(ethylene oxide) layers: effects of surface modification and approach velocity

The interaction forces between layers of the triblock copolymer Pluronic F108 adsorbed onto hydrophobic radio frequency glow discharge (RFGD) thin film surfaces and hydrophilic silica, in polymer-free 0.15 M NaCl solution, have been measured using the atomic force microscope (AFM) colloid probe technique. Compression of Pluronic F108 layers adsorbed on the hydrophobic RFGD surfaces results in a purely repulsive force due to the steric overlap of the layers, the form of which suggests that the PEO chains adopt a brush conformation. Subsequent fitting of these data to the polymer brush models of Alexander-de Gennes and Milner, Witten, and Cates confirms that the adsorbed Pluronic F108 adsorbs onto hydrophobic surfaces as a polymer brush with a parabolic segment density profile. In comparison, the interaction between Pluronic F108 layers adsorbed on silica exhibits a long ranged shallow attractive force and a weaker steric repulsion. The attractive component is reasonably well described by van der Waals forces, but polymer bridging cannot be ruled out. The weaker steric component of the force suggests that the polymer is less densely packed on the surface and is less extended into solution, existing as polymeric isolated mushrooms. When the surfaces are driven together at high piezo ramp velocities, an additional repulsive force is measured, attributable to hydrodynamic drainage forces between the surfaces. In comparing theoretical predictions of the hydrodynamic force to the experimentally obtained data, agreement could only be obtained if the flow profile of the aqueous solution penetrated significantly into the polymer brush. This finding is in line with the theoretical predictions of Milner and provides further evidence that the segment density profile of the adsorbed polymer brush is parabolic. A velocity dependent additional stepped repulsive force, reminiscent of a solvation oscillatory force, is also observed when the adsorbed layers are compressed under high loads. This additional force is presumably a result of hindered drainage of water due to the presence of a high volume fraction of polymer chains between the surfaces.     

Ion specific surface forces between membrane surfaces

Entities such as ion distributions and forces between lipid membranes depend on effects due to the intervening salt solution that have not been recognized previously. These specific ion or Hofmeister effects influence membrane fusion. A typical illustrative example is this: measurements of forces between double-chained cationic bilayers adsorbed onto molecularly smooth mica surfaces across different 0.6-2 mM salt solutions have revealed a large degree of ion specificity [Pashley et al. J. Phys. Chem. 1986, 90, 1637]. This has been interpreted in terms of very specific anion "binding" to the adsorbed bilayers, as it would too for micelles and other self-assembled systems. However, we show here that inclusion of nonelectrostatic (NES) or ionic dispersion potentials acting between ions and the two surfaces explains such "ion binding". The observed Hofmeister sequence for the calculated pressure without any direct ion binding is given correctly. This demonstrates the importance of a source of ion specificity that has been ignored. It is due to ionic physisorption caused by attractive NES ionic dispersion potentials. There appear to be some far reaching consequences for interpretations of membrane intermolecular interactions in salt solutions.     

PAA/PEO comb polymer effects on rheological properties and inter-particle forces in aqueous silica suspensions

The effects of a poly(acrylic acid) (PAA)-poly(ethylene) (PEO) comb polymer dispersant on the rheological properties and inter-particle forces in aqueous silica suspensions have been studied under varying pH conditions. The comb polymer was found to adsorb more strongly under acidic than basic conditions, indicating that the PAA backbone of the copolymer preferentially adsorbs onto silica surfaces with the PEO "teeth" extending out from the surface into the solution. In the presence of low concentrations of copolymer, the silica suspensions were stable due to electrostatic repulsions between the silica surfaces. At higher copolymer concentrations and under neutral and basic conditions, where the copolymer interacted only weakly with silica, the suspensions showed a transition from a dispersed to weakly flocculated state and attractive forces were measured between silica surfaces. Under acidic conditions, the silica dispersion also destabilized at intermediate copolymer adsorbed density and then was re-stabilized at higher adsorbed coverage. The silica suspensions were stable at high copolymer coverage due to steric repulsions between the particles. The destabilization at intermediate coverage is thought to be due to polymer bridging between particles or possibly depletion forces.     

Density profiles and solvation forces for a Yukawa fluid in a slit pore

The effect of varying wall-particle and particle-particle interactions on the density profiles near a single wall and the solvation forces between two walls immersed in a fluid of particles is investigated by grand canonical Monte Carlo simulations. Attractive and repulsive particle-particle and particle-wall interactions are modeled by a versatile hard-core Yukawa form. These simulation results are compared to theoretical calculations using the hypernetted chain integral equation technique, as well as with fundamental measure density functional theory (DFT), where particle-particle interactions are either treated as a first order perturbation using the radial distribution function or else with a DFT based on the direct-correlation function. All three theoretical approaches reproduce the main trends fairly well, but exhibit inconsistent accuracy, particularly for attractive particle-particle interactions. We show that the wall-particle and particle-particle attractions can couple together to induce a nonlinear enhancement of the adsorption and a related "repulsion through attraction" effect for the effective wall-wall forces. We also investigate the phenomenon of bridging, where an attractive wall-particle interaction induces strongly attractive solvation forces.     

Surface forces,supramolecular polymers,and inversion symmetry

The effects of supramolecular equilibrium polymers on surface forces are studied by both a phenomenological Landau type analysis and a molecular model based on a Bethe-Guggenheim approximation. We point out that surface forces brought about by equilibrium polymers may be completely different from what can be found with "ordinary" polymers. The new feature is the role of inversion (a)symmetry or "directionality" of the associating unit molecules ("monomers"). Symmetric B-B monomers (where B denotes a self-complementary binding group) give rise to nondirectional chains and lead to attractive forces between similar surfaces. Asymmetric A-D monomers (where A and D denote complementary acceptor and donor groups, respectively) produce directional chains and can cause strong repulsion. The range of the attractive force has a maximum at intermediate concentration, while the range of the repulsive force increases over the whole concentration range.     

Image charges and dispersion forces in electric double layers: the dependence of wall-wall interactions on salt concentration and surface charge density

The interaction pressure between two planar charged walls is calculated for a range of conditions. The diffuse electric double layers between the two wall surfaces are treated with ion-wall dispersion forces and ionic image charge interactions taken into account. Both these interactions are due to dielectric discontinuities at the surfaces. Ion-ion and ion-image charge correlations are explicitly included. The ion-wall dispersion interactions can give rise to appreciable ion specific effects, which are particularly strong when the counterions to the surfaces are highly polarizable. The mechanisms of these effects are investigated, and their influence on the net interaction pressure between the walls is studied for a range of surface charge densities, strengths of the anion-wall dispersion interaction and bulk electrolyte concentrations. When the strength of the anion-wall dipersion interaction is increased, the pressure generally becomes less repulsive (or more attractive) for positive surfaces. The opposite happens in general for negative surfaces but to a much lesser extent. The effects are largest for large surface charge densities and high electrolyte concentrations. The image charge interactions give rise to a considerable depletion attraction between the walls for low surface charge densities.     

Forces between polyethylene surfaces in oxyethylene dodecyl ether solutions as influenced by the number of oxyethylene groups

The atomic force microscopy (AFM) colloidal probe technique was used to study the effect of oxyethylene dodecyl ethers, C12En (n = 1-7), on interactions between hydrophobic polyethylene (PE) surfaces in aqueous solutions. Long-range (colloidal) and contact (pull-off) forces were measured between 10 to 20 microm PE spheres and a flat PE surface at concentrations of surfactant of 1 x 10(-6) and 1 x 10(-4) M. The surface tension of the surfactant solutions and contact angles at PE surfaces were also studied. The influence of the number of oxyethylene groups in the surfactant molecule was examined. Initially, long-range attractive (hydrophobic) forces between the PE surfaces were observed that decreased in range and magnitude with an increase in the number of oxyethylene groups in 1 x 10(-4) M solutions. Above four oxyethylene groups per molecule, repulsive forces were observed. The measured pull-off force between PE surfaces decreased monotonically from approximately 500 mJ/m2 for C12E1 to 150 mJ/m2 for C12E7. The interfacial energy was calculated on the basis of the JKR model, taking into account long-range forces operating outside the contact area. The interfacial energies decreased from 43-47 mJ/m2 for PE-water and PE-C12E1 (1 x 10(-4) M) interfaces to approximately 18 mJ/m2 for PE-C12E7 (1 x 10(-4) M). The interfacial energy was also calculated from measured contact angles and surface tensions using Neumann's equation of state and Young's equation. A similar relationship between interfacial energy and the number of oxyethylene groups was observed on the basis of contact and surface tension measurements. However, interfacial energy values were smaller, within 15-20 mJ/m2, than those calculated from AFM pull-off force measurements.     

Excluded volume effects in macromolecular forces and ion-interface interactions

A charged Yukawa liquid confined in a slit nanopore is studied in order to understand excluded volume effects in the interaction force between the pore walls. A previously developed self-consistent scheme [S. Buyukdagli, C. V. Achim, and T. Ala-Nissila, J. Stat. Mech. 2011, P05033] and a new simpler variational procedure that self-consistently couple image forces, surface charge induced electric field, and pore modified core interactions are used to this aim. For neutral pores, it is shown that with increasing pore size, the theory predicts a transition of the interplate pressure from an attractive to a strongly repulsive regime associated with an ionic packing state, an effect observed in previous Monte Carlo simulations for hard core charges. We also establish the mean-field theory of the model and show that for dielectrically homogeneous pores, the mean-field regime of the interaction between the walls corresponds to large pores of size d > 4 ?. The role of the range of core interactions in the ionic rejection and interplate pressure is thoroughly analyzed. We show that the physics of the system can be split into two screening regimes. The ionic packing effect takes place in the regime of moderately screened core interactions characterized with the bare screening parameter of the Yukawa potential b ? 3/l(B), where l(B) is the Bjerrum length. In the second regime of strongly screened core interactions b ? 3/l(B), solvation forces associated with these interactions positively contribute to the ionic rejection driven by electrostatic forces and enhance the magnitude of the attractive pressure. For weakly charged pores without a dielectric discontinuity, core interactions make a net repulsive contribution to the interplate force and also result in oscillatory pressure curves, whereas for intermediate surface charges, these interactions exclusively strengthen the external pressure, thereby reducing the magnitude of the net repulsive interplate force. The pronounced dependence of the interplate pressure and ionic partition coefficients on the magnitude and the range of core interactions indicates excluded volume effects as an important ion specificity and a non-negligible ingredient for the stability of macromolecules in electrolyte solutions.     

Correlations between dynamical properties and features of potential energy surfaces for the light atom transfer reactions O+HCl→OH+Cl AND Cl+HCl→ClH+Cl

A three-dimensional quasiclassical trajectory study of the dynamics of the light atom transfer reaction O(³P) + HCl(ν=0)→ OH + Cl was carried out employing two LEPS potential energy surfaces (I and II). Attention was focused mainly on three-dynamical properties; the oscillatory behavior of partial cross sections as a function of collision energy; the rotational excitation of the products; and the influence of reagent rotation on reactivity. Distinct differences were found between surfaces I and II with respect to these properties. The examination of individual trajectories indicated that there is a significant difference in the nature of these surfaces. While surface I is governed by weak repulsive forces, surface II is governed by strong attractive forces which tend to direct the reactants toward a collinear geometry. The present results confirm conclusions reached from an earlier study of the reaction Cl+HCl→ClH+Cl concerning correlations between dynamical properties and features of potential energy surfaces. For surfaces of the type that we termed HREP, since they are of repulsive nature and they lead to highly rotationally excited products, no significant oscillations of partial cross sections are obtained and reagent rotation promotes the reaction. On the other hand, for surfaces of the type that we termed COLD (collinearly directing), since they tend to direct the reactants toward a collinear geometry and form rotationally “cold” products, significant oscillations of partial cross sections are obtained and reagent rotation causes a decline in reactivity.     

Molecular dynamics simulation of the diffusion of nanoconfined fluids

A new molecular dynamics simulation technique for simulating fluids in confinement [H. Eslami, F. Mozaffari, J. Moghadasi, F. Müller-Plathe, J. Chem. Phys. 129 (2008) 194702] is employed to simulate the diffusion coefficient of nanoconfined Lennard-Jones fluid. The diffusing fluid is liquid Ar and the confining surfaces are solid Ar fcc (100) surfaces, which are kept frozen during the simulation. In this simulation just the fluid in confinement is simulated at a constant temperature and a constant parallel component of pressure, which is assumed to be equal to the bulk pressure. It is shown that the calculated parallel (to the surfaces) component of the diffusion coefficients depends on the distance between the surfaces (pore size) and shows oscillatory behavior with respect to the intersurface separations. Our results show that on formation of well-organized layers between the surfaces, the parallel diffusion coefficients decrease considerably with respect to the bulk fluid. The effect of pressure on the parallel diffusion coefficients has also been studied. Better organized layers, and hence, lower diffusion coefficients are observed with increasing the pressure.     

Analysis of Attractive Interactions between Latex Particles in the Presence of Nonadsorbing Polymers by Turbidimetry

The analysis of attractive forces between latex particles by scattering measurements is reconsidered. The change effected on the structure factor S(q) (q = (4pin0/lambda0)sin(θ/2), where θ is the scattering angle, n0 is the refractive index of the medium, and lambda0 is the wavelength in vacuo) of a suspension of latex particles by weak attractions is considered in terms of the HMSA-integral equation theory as presented recently by Bergenholtz et al. (1996, Mol. Phys. 87, 331). Model calculations using this approach show that turbidimetry is highly suitable to obtain quantitative information on attractive forces between the latex particles. The method of analysis developed here is applied to previous turbidimetric data obtained from mixtures of a polystyrene latex and a nonadsorbing polymer, hydroxyethylcellulose (HEC) (1997, Langmuir 13, 551). Here the addition of HEC leads to attractive depletion forces between the PS particles by the nonbalanced osmotic pressure of the polymeric HEC molecules. The turbidimetric data which are not afflicted by multiple scattering can be analyzed quantitatively in terms of an Asakura-Oosawa interaction potential between the latex particles. The osmotic pressure derived from this analysis is much smaller than the actual osmotic pressure exerted by the dissolved HEC. Possible reasons for this discrepancy are discussed. Copyright 1999 Academic Press.     

Capillary bridging and long-range attractive forces in a mean-field approach

When a mixture is confined, one of the phases can condense out. This condensate, which is otherwise metastable in the bulk, is stabilized by the presence of surfaces. In a sphere-plane geometry, routinely used in atomic force microscope and surface force apparatus, it can form a bridge connecting the surfaces. The pressure drop in the bridge gives rise to additional long-range attractive forces between them. By minimizing the free energy of a binary mixture we obtain the force-distance curves as well as the structural phase diagram of the configuration with the bridge. Numerical results predict a discontinuous transition between the states with and without the bridge and linear force-distance curves with hysteresis. We also show that similar phenomenon can be observed in a number of different systems, e.g., liquid crystals and polymer mixtures.     

Hydration force between mica surfaces in aqueous KCl electrolyte solution

Liquid-vapor molecular dynamics simulations are performed to study the interaction forces between two mica surfaces in an aqueous KCl electrolyte solution. Strong repulsive hydration force is obtained within a distance of ~2 nm between the two mica surfaces, which cannot be explained by the continuum theory of double-layer repulsion. We find that this short-range repulsive hydration force is much stronger than the double-layer force between mica surfaces. Whereas the simulation system is much smaller than the surface force measurement system, fundamental mechanisms of repulsive hydration force are revealed. In particular, important features of the step-like force oscillatory behavior during normal compression and force hysteresis during retraction are observed. Detailed analysis of the ionic density distributions shows that the "forced adsorption" of diffusive K(+) ions onto mica surfaces during compression and the subsequent "slow desorption" of the absorbed K(+) ions from mica surfaces upon retraction are responsible for the hysteresis phenomenon. From a mechanics point of view, we attribute the load bearing capacity of the dense electrolyte to the very hard hydration shells of K(+) metal ions under confinement. We find that the hydrated K(+) ions and Cl(-) co-ions remain very diffusive in the aqueous film. Water molecules in the hydration layer are also very fluidic, in the sense that the diffusion constant of water molecules is less than its bulk value by at most 3 orders of magnitude under the extreme confinement.     

Interaction Forces Between Graphitic Carbon Black Surfaces Coated with Polymers Using Atomic Force Microscopy

Carbon black dispersions are stabilized using polymeric dispersants. The stabilization is provided by adsorbed polymer layers around surfaces through interaction forces. Therefore, it is valuable to measure the interaction forces between bare and polymer-coated surfaces using atomic force microscopy to predict the behavior of dispersions. Three polymeric dispersants (Hypermer LP1, Hypermer B246, and OLOA 11000) are used in the present work to disperse the graphitic carbon black particles in an organic solvent, decaline. Hypermer B246 and OLOA 11000 produced repulsive interactions and, hence, are effective stabilizers for carbon black surfaces. Hypermer LP1 produced attractive interactions, making it an ineffective stabilizer for carbon black. Attractive interactions were also observed in blank dispersions. The experimentally determined interaction curves are compared with theoretical curves, the Derjaguin approximation. The repulsive steric interactions are also analyzed quantitatively based on the Alexander and de Gennes scaling law.     

Solvation forces versus the nano-colloidal structural forces under the film confinement: Layer to in-layer structural transition in wetting solids

This work reviews the origins, similarities, measurement techniques, and differences of the solvation and nano-colloidal oscillatory structural forces in confined domains. With an increasing confinement, the particles’ structural transition changes from 2D random layering to 2D crystalline packing, as observed experimentally and revealed by the radial distribution function. The 2D in-layer structural energy transition was estimated to be 1.8 kT using the Boltzmann normal distribution law. The transition from a 2D random structure away from the vertex to 2D cubic/hexagonal domains near the vortex was discontinuous and was confirmed by the particle density profile computed by an integral equation. The critical roles of the solvation and nano-colloidal oscillatory structural forces on the wetting and spreading of the simple liquids and complex liquids on solid surfaces are elucidated.     

Normal and friction forces between mucin and mucin-chitosan layers in absence and presence of SDS

Employing the colloidal probe AFM technique we have investigated normal and friction forces between flat mica surfaces and silica particles coated with mucin and combined mucin-chitosan layers in presence and absence of anionic surfactant, SDS, in 30 mM NaCl solution. We have shown that the normal interactions between mucin coated mica and silica surfaces are dominated by long-range steric repulsion on both compression and decompression. Friction forces between such mucin layers are characterized by a low effective friction coefficient, mu(eff)=0.03+/-0.02, which is lower than the value of 0.13+/-0.02 observed when chitosan layers were adsorbed. Forces between combined mucin-chitosan layers have also been measured. Adsorption of chitosan on mucin results in considerable compaction of the layer, and development of attractive forces detectable on separation. Friction between mucin-chitosan layers in 30 mM NaCl solution is high, with mu(eff) approximately 0.4. Adsorption of additional mucin to this layer results in no improvement with respect to lubrication as compared to the mucin-chitosan layer, and mu(eff) approximately 0.4 is observed. We argue that the layers containing both mucin and chitosan are not strictly layered but rather strongly entangled. As a result attractive interactions between oppositely charged moieties of sialic acid residues from mucin and amine groups from chitosan residing on the opposing surfaces contribute to the increased friction. The effects of SDS on normal and friction forces between combined mucin-chitosan layers were also investigated. The relation between surface interactions and friction properties is discussed.     

Interaction forces measured between poly(N-isopropylacrylamide) grafted surface and hydrophobic particle

The interaction forces between poly(N-isopropylacrylamide) (PNIPAAm)-grafted surfaces and colloidal particles in an aqueous solution were investigated using an atomic force microscope. Measurements were conducted between smooth silicon wafers on which PNIPAAm was terminally grafted and silica particles hydrophobized with a silanating reagent in an aqueous electrolyte solution under controlled temperature. Below the lower critical solution temperature (LCST) of PNIPAAm, there were large repulsive forces between the surfaces, both on approach and separation of the surfaces. On the other hand, above LCST, attractive forces were observed both in approaching and in separating force curves. When surface hydrophobicity of the particles increased, the maximum attractive force tended to increase. The changes of hydration state of the grafted PNIPAAm chains depending on temperature are considered to greatly alter the interaction force properties. The role of the intermolecular interaction between the PNIPAAm chains and the hydrophobic particles in the interaction forces is discussed.