A noble interaction: An assessment of noble gas binding ability of metal oxides (metal = Cu,Ag, Au)

An in silico study is performed on the structure and the stability of noble gas (Ng) bound MO complexes (M = Cu, Ag, Au). To understand the stability of these Ng bound complexes, dissociation energies, dissociation enthalpy, and dissociation free energy change are computed. The stability of NgMO is also compared with that of the experimentally detected NgMX (X= F, Cl, Br). It is found that MO has lower Ng binding ability than that of MX. All the dissociation processes producing Ng and MO are endothermic in nature and for the Kr‐Rn bound MO (M = Cu, Au), and Xe and Rn bound AgO cases, the corresponding dissociation processes are turned out to be endergonic in nature at standard state. The Wiberg bond indices of Ng? M bonds and Ng→M electron transfer gradually increase from Ar to Rn and for the same Ng they follow the order of NgAuO > NgCuO > NgAgO. Energy decomposition analysis shows that the Ng? M bonds in NgMO are partly covalent and partly electrostatic in nature. Electron density analysis further highlights the partial covalent character in Ng? M bonds. © 2016 Wiley Periodicals, Inc.     

HNgBeF3 (Ng = Ar‐Rn): Superhalogen‐supported noble gas insertion compounds

Ab initio and density functional theory‐based calculations are performed to study the structure, stability, and nature of bonding of superhalogen‐supported noble gas (Ng) compounds of the type HNgY where (Ng = Ar‐Rn; Y = BeF₃). Here, BeF₃ acts as the superhalogen. Calculations show that the HNgBeF₃ spontaneously dissociates into product following the dissociation channels: HNgBeF₃ → HBeF₃ + Ng and HNgBeF₃ → Ng + HF + BeF₂. The transition states are optimized and the energy barriers are computed to show the metastable behavior of HNgBeF₃. HNgBeF₃ molecules are kinetically stable with respect to the first dissociation process having energy barriers of 1.0, 5.0, 10.6, and 13.9 kcal/mol for Ar, Kr, Xe, and Rn analogues, respectively, at CCSD(T)/Aug‐cc‐pVTZ level. These calculations suggest that the HXeBeF₃ and HRnBeF₃ can be shown to be stable up to ∼100 K temperature with a half‐life of ∼10² seconds. The nature of H Ng and two different types of Ng F bonds in HNgBeF₃ molecules is explored through the natural bond orbital and electron density analyses. The large Wiberg bond index (WBI) values for the H Ng bond indicate the formation of almost a single bond in between H‐atoms and Ng‐atoms, whereas small WBI values for the two Ng F bonds indicate a noncovalent interaction in between them. The electron density analysis further supports the covalency of the H Ng bond and noncovalent interaction in the two Ng F bonds in HNgBeF₃.     

Electron density properties and metallophilic interactions of gold halides AuX2 and Au2X (X = F–I): Ab Initio calculations

We present ab initio calculations of the electron density properties and metallophilic interactions of the gold halide series, AuX₂ and Au₂X (X = F–I) as well as their anions performed at MP2 theoretical level with extended basis sets. The gold halide's structure, stability, and interactions with alkali metal atoms were investigated. The mechanisms of metallophilic interactions were explored by natural bond orbital analyses, electron localization function, electron density deformation, atoms in molecules, and reduced density gradient analyses. © 2016 Wiley Periodicals, Inc.     

Theoretical study of the interaction d10‐d8 between Pt(0) and M(I) on the [Pt(PH3)3?MPH3] complexes (M = Cu,Ag, Au)

Ab initio calculations suggest that a series of complexes of type [Pt(PH₃)₃? MPH₃]⁺ (M = Au, Ag, Cu) are stable. We found that changes around the equilibrium distance Pt? M and in the interaction energies are sensitive to the electron correlation potential. This effect was evaluated using several levels of theory, including HF, MP2, and B3LYP. Both the magnitude of the interaction energies and distances Pt? M indicate a formal chemical bond, the latter being ratified by orbital diagram. © 2007 Wiley Periodicals, Inc. Int J Quantum Chem, 2007     

Structural properties and the effect of 2,6‐diaminoanthraquinone on G‐tetrad,non‐G‐tetrads,and mixed tetrads—A density functional theory study

Telomerase inhibitor causes the attrition of telomere length and consequently leading to senescence which require a lag period for cancer cells to stop proliferating. Telomeric sequences form quadruplex structures stabilized by tetrads. The structural and electronic properties related with interaction of 2,6‐diaminoanthraquinone and tetrads are the key step to elucidate the anticancer activity. The present study has been focused on the stability of the isolated tetrads and the effect of interaction of 2,6‐diaminoanthraquinone with G‐tetrad, non‐G‐tetrads, and mixed tetrads using density functional theory method in both gas and aqueous phases. The solvent interaction with the molecular systems has increased the stability of the isolated tetrads and complexes. The sharing of electron density between the interacting molecules is shown through electron density difference maps. The atoms in molecules theory and natural bond orbital analysis have been performed to study the nature of hydrogen bonds in the inhibitor interacting complexes. The linear correlation is shown between electron density [ρ(r)], and its Laplacian [(²ρ(r)] at the bond critical points. The strong binding nature of 2,6‐diaminoanthraquinone with studied tetrads reveals that this inhibitor is suitable to stabilize the above tetrads and inhibit the telomerase activity. © 2010 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

Force constant decomposition for penta‐coordinated XH3Cl2‐ (X = C,Si, Ge) structures

Based on the energy decomposition analysis of an interacting system, we propose a method for force constant decomposition analysis with respect to the specific normal coordinate. Using the presented method, we examined the penta‐coordinated system (X = C, Si, Ge), which possesses a three‐center four‐electron bond. The origin of the difference in the stability of the penta‐coordinated D_3h structures was clearly shown to be the effect of electron delocalization–polarization term. © 2018 Wiley Periodicals, Inc.     

The Analysis of Electronic Structures,NBO, EDA,and QTAIM of trans‐(H3P)2(η2‐BH4 )W(≡C‐para‐C6H4X)(CO) Complexes

In the present research, the impact of substitution on the dipole moment, electronic structure, and frontier orbital energy in trans ‐(H₃P )₂(η²‐BH₄ )W(≡C‐para ‐C₆H₄X )(CO ) complexes (X = H, F, SiH₃ , CN , NO₂ , SiMe₃ , CMe₃ , NH₂ , NMe₂ ) was studied with mpw1pw91 quantum chemical computations. The nature of the chemical bond between the trans‐[Cl(η²‐BH₄ )(H₃P ) ₂W ]⁻ and [C‐para ‐C₆H₄X ]⁺ fragments was demonstrated through energy decomposition analysis (EDA ). The percentage composition in terms of the specified groups of frontier orbitals was examined for these complexes to investigate the feature in metal–ligand bonds. Quantum theory of atoms in molecules (QTAIM ) and natural bond orbital (NBO ) analysis were applied to elucidate these complexes’ metal–ligand bonds.     

Substituent Effect on the Electronic Properties and Nature of the W≡C Bond in trans‐Cl(OC)(H3P)3W(≡C‐para‐C6H4X) (X = H,F, SiH3, CN,NO2, SiMe3, CMe3, NH2, NMe2) Complexes: A Computational Quantum Chemistry Study

In this investigation, we describe substituent effect on the dipole moment, ionization potential, electron affinity, structure, frontier orbitals energy, in the trans‐Cl(OC)(H₃P)₃W(≡C‐para‐C₆H₄X) (X = H, F, SiH₃, CN, NO₂, SiMe₃, CMe₃, NH₂, NMe₂) complexes using MPW1PW91 quantum chemical calculations. The nature of chemical bond between the [Cl(OC)(H₃P)₃W]⁻ and [C‐para‐C₆H₄X]⁺ fragments was illustrated with energy decomposition analysis (EDA). Percentage composition in terms of the defined groups of frontier orbitals for these complexes was inspected to investigate the character in metal–ligand bonds. Quantum theory of atoms in molecules (QTAIM) was used for illustration of metal–ligand bonds in these complexes.     

Diboron Bonds Between BX3 (X=H,F, CH3) and BYZ2 (Y=H,F; Z=CO,N2, CNH)

The ability of B atoms on two different molecules to engage with one another in a noncovalent diboron bond is studied by ab initio calculations. Due to electron donation from its substituents, the trivalent B atom of BYZ₂ (Z=CO, N₂, and CNH; Y=H and F) has the ability to in turn donate charge to the B of a BX₃ molecule (X=H, F, and CH₃), thus forming a B⋅⋅⋅B diboron bond. These bonds are of two different strengths and character. BH(CO)₂ and BH(CNH)₂, and their fluorosubstituted analogues BF(CO)₂ and BF(CNH)₂, engage in a typical noncovalent bond with B(CH₃)₃ and BF₃, with interaction energies in the 3–8 kcal/mol range. Certain other combinations result in a much stronger diboron bond, in the 26–44 kcal/mol range, and with a high degree of covalent character. Bonds of this type occur when BH₃ is added to BH(CO)₂, BH(CNH)₂, BH(N₂)₂, and BF(CO)₂, or in the complexes of BH(N₂)₂ with B(CH₃)₃ and BF₃. The weaker noncovalent bonds are held together by roughly equal electrostatic and dispersion components, complemented by smaller polarization energy, while polarization is primarily responsible for the stronger ones.     

Syntheses,toxicity and biodistribution of CO‐releasing molecules containing M(CO)5 (M = Mo,W and Cr)

A series of CO‐releasing molecules M(CO)₅ L (M = Mo, W and Cr), ( 1 , 2 , 3 , L = glycine methyl ester; 4 , 5 , 6 , N‐methylimidazole; 7 , 8 , 9 , 2‐aminopyridine; 10 , 11 , 12 , 3‐aminopyridine; 13 , 14 , 15 , 4‐aminopyridine), were synthesized. All complexes have been characterized by NMR, IR and electrospray ionization mass spectroscopy; the octahedral structures of 14 and 15 were also established by X‐ray crystallography. Furthermore, all complexes were evaluated for toxicity, pharmacokinetics and metabolic processes. Cytotoxic effects on the proliferation of fibroblast cell line were assayed by MTT. Among the complexes, Mo complex 1 showed the lowest cytotoxicity (IC₅₀ = 597 µmol l^?1) and W complex 2 showed a remarkable toxic effect, with IC₅₀ = 52 µmol l^?1. With the same ligand, the toxic effects of the complexes increase in the order of metal element W < Cr < Mo. For the same central metal element, the complexes containing imidazole showed lower toxic effects than those containing amino acid ester or aminopyridine. In accordance with the results from cytotoxicity, the complexes also showed corresponding toxic effects in animal models. The biodistributions of the complexes were established by inductively coupled plasma–atomic emission spectroscopy, measuring metal in tissues and organs. The results show that the complexes were gradually absorbed and unevenly distributed in vivo. The complexes containing imidazole entered tissues and organs faster than those containing amino acid ester. The complexes containing W atom were absorbed and distributed more slowly than those containing Mo or Cr atoms. Copyright © 2014 John Wiley & Sons, Ltd.     

Structure and stability of coinage metal fluoride and chloride clusters (MnFn and MnCln,M = Cu,Ag, or Au; n = 1–6)

Calculations in the framework of the density functional theory are performed to study the lowest‐energy isomers of coinage metal fluoride and chloride clusters (M_nF_n, M_nCl_n, M = Cu, Ag, or Au, n = 1–6). For all calculated species starting from the trimers the most stable structures are found to be cyclic arrangements. However, planar rings are favored in the case of metal fluorides whereas metal chlorides prefer nonplanar cycles. Calculated bond lengths and infrared frequencies are compared with the available experimental data. The nature of the bonding, involving both covalent and ionic contributions, is characterized. The stability and the fragmentation are also investigated. Trimers are found to be particularly stable when considering the Gibbs free energies. © 2012 Wiley Periodicals, Inc.     

Theoretical Study on the Hydrogen Bonding Interactions in Complexes of 5‐Hydroxytryptamine with Water

The energies, geometries and harmonic vibrational frequencies of 1:1 5‐hydroxytryptamine‐water (5‐HT‐H₂O) complexes are studied at the MP2/6‐311++G(d,p) level. Natural bond orbital (NBO), quantum theory of atoms in molecules (QTAIM) analyses and the localized molecular orbital energy decomposition analysis (LMO‐EDA) were performed to explore the nature of the hydrogen‐bonding interactions in these complexes. Various types of hydrogen bonds (H‐bonds) are formed in these 5‐HT‐H₂O complexes. The intermolecular C4H5^5‐HT···O^w H‐bond in HTW3 is strengthened due to the cooperativity, whereas no such cooperativity is found in the other 5‐HT‐H₂O complexes. H‐bond in which nitrogen atom of amino in 5‐HT acted as proton donors was stronger than other H‐bonds. Our researches show that the hydrogen bonding interaction plays a vital role on the relative stabilities of 5‐HT‐H₂O complexes.     

Benchmarking density functionals in conjunction with Grimme's dispersion correction for noble gas dimers (Ne2, Ar2, Kr2, Xe2, Rn2)

Eleven exchange‐correlational functionals of different types corrected for dispersion by Grimme's D3 correction in conjunction with the aug‐cc‐pVTZ basis set were tested on the following noble gas (Ng) dimers: Ne₂, Ar₂, Kr₂, Xe₂, and Rn₂. For comparison, the D2 and D3BJ corrections were probed with the B3LYP functional. From post‐HF wavefunction methods, CCSD(T) theory was also included. The investigated properties involved potential energy curves, equilibrium bond distances, and interaction energies. The B3LYP‐D3, B3LYP‐D3BJ, and PBE0‐D3 functionals performed overall best for bond distances, while B3LYP‐D3 and B97‐D3 performed best for interaction energies. The importance of fortunate error cancellations was seen in the often reduced agreement with reference data upon correction for BSSE. As several functionals performed well selectively for some noble gases (and poorly for others), we also analysed the performance on the Ng₂ dimers individually and recommended DFT‐D3 functionals for the calculation of large clusters of each Ng.     

Structure,stability, and nature of bonding in carbon monoxide bound complexes (E = group 14 element; X = H,F, Cl,Br, I)

A density functional theory study is performed to predict the structures and stability of carbon monoxide (CO) bound (E = C, Si, Ge, Sn, Pb; X = H, F, Cl, Br, I) complexes. The possibility of bonding through both C‐ and O‐sides of CO is considered. Thermochemical analysis reveals that all the dissociation processes producing CO and are endothermic in nature whereas most of the dissociation reactions are endergonic in nature at room temperature. The nature of bonding in E? C/O bonds is analyzed via Wiberg bond index, natural population analysis, electron density, and energy decomposition analyses in conjunction with natural orbitals for chemical valence scheme. In comparison to C? O stretching frequency ( ) in free CO, while a red shift is noted in O‐side binding, the C‐side binding results in a blue shift in . The relative change in values in CO bound complexes on changing either E or X is scrutinized and possible explanation is provided in terms of polarization in the σ‐ and π‐orbitals and the relative strength of C→E or O→E σ‐donation and E→C or E→O π‐back‐donation. © 2016 Wiley Periodicals, Inc.     

The reactions of Cr(CO)6, Fe(CO)5, and Ni(CO)4 with O2 yield viable oxo‐metal carbonyls

Transition metal complexes with terminal oxo and dioxygen ligands exist in metal oxidation reactions, and many are key intermediates in various catalytic and biological processes. The prototypical oxo‐metal [(OC)₅Cr? O, (OC)₄Fe? O, and (OC)₃Ni? O] and dioxygen‐metal carbonyls [(OC)₅Cr? OO, (OC)₄Fe? OO, and (OC)₃Ni? OO] are studied theoretically. All three oxo‐metal carbonyls were found to have triplet ground states, with metal‐oxo bond dissociation energies of 77 (Cr? O), 74 (Fe? O), and 51 (Ni? O) kcal/mol. Natural bond orbital and quantum theory of atoms in molecules analyses predict metal‐oxo bond orders around 1.3. Their featured ν(MO, M = metal) vibrational frequencies all reflect very low IR intensities, suggesting Raman spectroscopy for experimental identification. The metal interactions with O₂ are much weaker [dissociation energies 13 (Cr? OO), 21 (Fe? OO), and 4 (Ni? OO) kcal/mol] for the dioxygen‐metal carbonyls. The classic parent compounds Cr(CO)₆, Fe(CO)₅, and Ni(CO)₄ all exhibit thermodynamic instability in the presence of O₂, driven to displacement of CO to form CO₂. The latter reactions are exothermic by 47 [Cr(CO)₆], 46 [Fe(CO)₅], and 35 [Ni(CO)₄] kcal/mol. However, the barrier heights for the three reactions are very large, 51 (Cr), 39 (Fe), and 40 (Ni) kcal/mol. Thus, the parent metal carbonyls should be kinetically stable in the presence of oxygen. © 2014 Wiley Periodicals, Inc.     

Density functional studies on hydrogen‐bonded clusters of hydrogen halides and the interaction on halide anions

Density functional theory (DFT) calculations have been performed to study the structures and stability of X^?·(HX)_n=2–5 clusters where X = F, Cl, Br at B3LYP/6‐311++G** level of theory. The presence of halide ions in these clusters disintegrates the hydrogen halide clusters. All the hydrogen halides are then hydrogen bonded to the centrally placed halide ions, thereby forming multiple hydrogen bonds. The interaction energies have been corrected for the basis set superposition error (BSSE) using Boy's counterpoise correction method. Evidence for the destruction of hydrogen bonds in hydrogen halide clusters due to the presence of halide ions is further obtained from topological analysis and natural bond orbital analysis. The chemical hardness and chemical potential have been calculated for all the anion clusters. The above analysis reveals that hydrogen bonding in these systems is not an essentially electrostatic interaction. The nature of the stabilization interactions operative in these multiple hydrogen‐bonded clusters has been explained in terms of many‐body contribution to interaction energies. From these studies, an attempt has been made to understand the nature of the molecular properties resulting from different electronegativities of the halogens. © 2005 Wiley Periodicals, Inc. Int J Quantum Chem, 2005     

Theoretical study of the stability and properties of magic numbers (m = 5, n = 2) and (m = 6, n = 3) of bimetallic bismuth‐copper nanoclusters; Bim Cun

Inspired by the experimental discovery of magic numbers we present a first study using density functional theory for the structure and properties of neutral and cationic Bi₆Cu₃ and Bi₅Cu₂ clusters. Our results confirm predictions based on Wade's rules. The closed electron shells, characteristic of cationic clusters help impose enhanced stability, while also complying with Wade's rules. Charge distribution analysis, as well as electrostatic potential maps show that in almost all cases, Bi atoms donate charges to Cu atoms. According to the analysis of condensed Fukui indices, Cu atoms inside both clusters are not reactive. Contrastingly, Bi atoms are reactive and may be targeted by different types of attack. This study of the electronic properties may thus help to determine experimental strategies with the capacity to enhance the synthesis of catalysts.     

过渡金属团簇M20和M20(PMe3)4(M=Cu,Ag,Au)的量子化学理论研究

采用从头计算MP2和DFT理论方法,对过渡金属团簇M20和M20( PMe3)4(M=Cu,Ag,Au)的几何结构、电子结构以及团簇各组成部分之间的结合能进行了研究.所研究的体系具有较大的前线轨道能隙,与C60接近,显示出特别的稳定性.考虑电子相关效应的MP2方法能够对团簇的结构给予可靠的描述.离域泛函GGA对Cu和A...     

ToF‐SIMS study of 1‐dodecanethiol adsorption on Au,Ag, Cu and Pt surfaces

Time‐of‐flight secondary ion mass spectrometry (ToF‐SIMS) has been used to perform a chemical analysis of long‐chain thiol (CH₃(CH₂)₁₁SH)‐treated gold, silver, copper and platinum surfaces. All the mass peaks from positive and negative ion spectra within the range m/z = 0–2000 u are studied. ToF‐SIMS data revealed that on gold, silver and copper substrates 1‐dodecanethiol form dense standing‐up phases, but on platinum being a catalytically active substrate, we were able to identify also surface‐aligned parallel lying molecules in addition to a standing thiolate layer. Our study shows that when ToF‐SIMS spectra are analyzed, not only the existence of oligomers but also metal + hydrocarbon fragments give information about the order of SAM. Copyright © 2008 John Wiley & Sons, Ltd.