Correction: Construction of isostructural hydrogen-bonded organic frameworks: limitations and possibilities of pore expansion

Correction for ‘Construction of isostructural hydrogen-bonded organic frameworks: limitations and possibilities of pore expansion’ by Yuto Suzuki et al., Chem. Sci., 2021, 12, 9607–9618, https://doi.org/10.1039/D1SC02690A.

The authors regret that

Coordination-bond-directed synthesis of hydrogen-bonded organic frameworks from metal–organic frameworks as templates

Controlled synthesis of hydrogen-bonded organic frameworks (HOFs) remains challenging, because the self-assembly of ligands is not only directed by weak hydrogen bonds, but also affected by other competing van der Waals forces. Herein, we demonstrate the coordination-bond-directed synthesis of HOFs using a preformed metal–organic framework (MOF) as the template. A MOF (Cu^I-TTFTB) based on two-coordinated Cu^I centers and tetrathiafulvalene-tetrabenzoate (TTFTB) ligands was initially synthesized. Cu^I-TTFTB was subsequently oxidized to the intermediate (Cu^II-TTFTB) and hydrated to the HOF product (TTFTB-HOF). Single-crystal-to-single-crystal (SC-SC) transformation was realized throughout the MOF-to-HOF transformation so that the evolution of structures was directly observed by single-crystal X-ray diffraction. The oxidation and hydration of the Cu^I center are critical to breaking the Cu–carboxylate bonds, while the synergic corbelled S⋯S and π⋯π interactions in the framework ensured stability of materials during post-synthetic modification. This work not only provided a strategy to guide the design and discovery of new HOFs, but also linked the research of MOFs and HOFs.

The MOF-to-HOF transformation was realized in a single-crystal-to-single-crystal manner by the oxidation and hydration of the Cu^I center in Cu^I-TTFTB. The corbelled S⋯S and π⋯π interactions ensured the framework stability during transformation.     

Dual-functional hydrogen-bonded organic frameworks for aniline and ultraviolet sensitive detection

A novel hydrogen-bonded organic frameworks (HOFs) FJU-200 has been constructed from N,N'-bis(5-isophthalic acid)naphthalimide (H₄L). FJU-200 has a good dual-function of aniline and ultraviolet detection. FJU-200 is the first case of HOF with dual sensing of visual color changes and photoluminescence quenching for aniline detection, and the detection limit of aniline can reach 5.5 × 10⁻⁴ mol/L. Under ultraviolet FJU-200 will rapidly change from light yellow to rustic brown, which makes it possible to use FJU-200 to achieve minute-level ultraviolet detection. Moreover, for more convenient use, FJU-200 test papers are prepared. Using them, convenient and fast aniline or ultraviolet detection can be realized. The single-crystal X-ray structures show that compared with the original FJU-200, both PhNH₂@FJU-200 and UV-FJU-200 have larger pore sizes, and the dihedral angles of the H₂L²⁻ in framework has been changed.     

On-surface isostructural transformation from a hydrogen-bonded network to a coordination network for tuning the pore size and guest recognition

Rational manipulation of supramolecular structures on surfaces is of great importance and challenging. We show that imidazole-based hydrogen-bonded networks on a metal surface can transform into an isostructural coordination network for facile tuning of the pore size and guest recognition behaviours. Deposition of triangular-shaped benzotrisimidazole (H₃btim) molecules on Au(111)/Ag(111) surfaces gives honeycomb networks linked by double N–H⋯N hydrogen bonds. While the H₃btim hydrogen-bonded networks on Au(111) evaporate above 453 K, those on Ag(111) transform into isostructural [Ag₃(btim)] coordination networks based on double N–Ag–N bonds at 423 K, by virtue of the unconventional metal–acid replacement reaction (Ag reduces H⁺). The transformation expands the pore diameter of the honeycomb networks from 3.8 Å to 6.9 Å, giving remarkably different host–guest recognition behaviours for fullerene and ferrocene molecules based on the size compatibility mechanism.

A hydrogen-bonded network on a Ag(111) surface can transform into an isostructural Ag(i) coordination network, giving drastically different host–guest recognition behaviours.     

Computer-aided prediction of biological activity spectra for organic compounds: the possibilities and limitations

Russian Chemical Bulletin - We describe the current version of the PASS program for prediction of biological activity spectra of organic compounds based on analysis of structure—activity...     

Porphyrin-based two-dimensional covalent organic frameworks: synchronized synthetic control of macroscopic structures and pore parameters

A two-dimensional porphyrin covalent organic framework is solvothermally synthesized and the macroscopic structure and pore parameters can be synthetically controlled. A remarkable and positive COF size effect on the pore parameters enables such structural control with a synchronized feature.     

Metal organic frameworks showing hydrocarbon adsorption properties commensurate with their pore structure

Commensurate adsorption occurs when the number of molecules adsorbed per unit cell relates to the symmetry of the framework and its topology. While rare in zeolite materials, commensurate adsorption has been observed in several MOF materials. In some MOF materials, several molecules having dimensions within a limited size range show this effect. This paper describes the commensurate adsorption properties of three MOF materials and also two MOFs showing unusual combined structure-composition adsorption features.     

Direct pore engineering of 2D imine covalent organic frameworks via sub-stoichiometric synthesis

Two-dimensional covalent organic frameworks(2D COFs)bearing various topologies can be precisely designed based on the symmetry of monomers.Their pore environment can be further regulated via either pre-functionalization of the monomers or post-modification of the skeleton.Among them,sub-stoichiometric synthesis is an efficient method which can mediate uncondensed functional moieties periodically arranged in the COF skeletons.Herein,a series of imine-linked 2D COFs with specifically decorated formyl or amino groups were selectively synthesized via sub-stoichiometric formyl transamination.The molar ratios of the monomers directly determine the structures of the resulting COFs with periodic vertex vacancies.The COF with polar amino sites could efficiently capture CO₂ and H₂O.This work demonstrates tuning the stoichiometry of the monomers could facilely modulate the functions of the pore channels.It also provides insights into constructing novel COFs with complex structures for targeted applications.     

Metal-specific interactions of H2 adsorbed within isostructural metal-organic frameworks

Diffuse reflectance infrared (IR) spectroscopy performed over a wide temperature range (35-298 K) is used to study the dynamics of H(2) adsorbed within the isostructural metal-organic frameworks M(2)L (M = Mg, Mn, Co, Ni and Zn; L = 2,5-dioxidobenzene-1,4-dicarboxylate) referred to as MOF-74 and CPO-27. Spectra collected at H(2) concentrations ranging from 0.1 to 3.0 H(2) per metal cation reveal that strongly red-shifted vibrational modes arise from isolated H(2) bound to the available metal coordination site. The red shift of the bands associated with this site correlate with reported isosteric enthalpies of adsorption (at small surface coverage), which in turn depend on the identity of M. In contrast, the bands assigned to H(2) adsorbed at positions >3 ? from the metal site exhibit only minor differences among the five materials. Our results are consistent with previous models based on neutron diffraction data and independent IR studies, but they do not support a recently proposed adsorption mechanism that invokes strong H(2)···H(2) interactions (Nijem et al. J. Am. Chem. Soc.2010, 132, 14834-14848). Room temperature IR spectra comparable to those on which the recently proposed adsorption mechanism was based were only reproduced after contaminating the adsorbent with ambient air. Our interpretation that the uncontaminated spectral features result from stepwise adsorption at discrete framework sites is reinforced by systematic red shifts of adsorbed H(2) isotopologues and consistencies among overtone bands that are well-described by the Buckingham model of molecular interactions in vibrational spectroscopy.     

Shapelets: possibilities and limitations of shape-based virtual screening

Complementarity of molecular surfaces is crucial for molecular recognition. A method for representation of molecular shape is presented. We decompose the molecular surface into commensurate patches with defined shape by fitting hyperbolical paraboloids onto a triangulated isosurface of the Gaussian model of a molecule. As a result of this decomposition we obtain a 3D graph representation of the molecular shape, which can be used for complete and partial shape matching and isosteric group searching. To point out the possibilities and limitations of shape-only models, we challenged our method by three scenarios in a virtual screening contest: rigid body alignment, consensus shape filtering, and target-specific screening.     

Size- and shape-selective isostructural microporous metal-organic frameworks with different effective aperture sizes

Two isostructural metal-organic frameworks (MOFs) having micropores of the same "static aperture size" but different "effective aperture size" have been prepared using 5-(pyridin-3-ylethynyl)isophthalic acid as a ligand having two different types of functional units, an isophthalate (iph) unit and a pyridyl unit, simultaneously in a single ligand. The combination of iph unit and Cu (or Zn) ion led to two-dimensional layers of Kagome? (kgm) net topology, the layers being further pillared by the internal auxiliary pyridyl unit to form a three-dimensional microporous framework having two different types of cage-like pores, cage A and cage B, with different aperture sizes and shapes. (1) The MOFs can distinguish the adsorbates (N(2)/Ar) not based on the widely used kinetic diameters of the adsorbates but based on the minimum diameters of the adsorbates, which are more shape dependent. While cage A with a sufficiently large aperture size compared with the size of the adsorbates does not show any size selectivity, cage B with an approximate size match between the adsorbates and the pore apertures shows shape selectivity for the adsorbates. The smaller but spherically shaped Ar atom is not allowed into the pore with the oval-shaped aperture; however, the larger linear N(2) molecule is allowed into the pore with the oval-shaped aperture. (2) Even though the two isostructural MOFs have the same static aperture size of cage B, they show different size selectivity for the adsorbates based on the effective aperture size, which reflects the different extents of the framework flexibility.     

Visualizing defects and pore connectivity within metal–organic frameworks by X-ray transmission tomography

Metal–Organic Frameworks (MOFs) have the potential to change the landscape of molecular separations in chemical processes owing to their ability of selectively binding molecules. Their molecular sorting properties generally rely on the micro- and meso-pore structure, as well as on the presence of coordinatively unsaturated sites that interact with the different chemical species present in the feed. In this work, we show a first-of-its-kind tomographic imaging of the crystal morphology of a metal–organic framework by means of transmission X-ray microscopy (TXM), including a detailed data reconstruction and processing approach. Corroboration with Focused Ion Beam-Scanning Electron Microscopy (FIB-SEM) images shows the potential of this strategy for further (non-destructively) assessing the inner architecture of MOF crystals. By doing this, we have unraveled the presence of large voids in the internal structure of a MIL-47(V) crystal, which are typically thought of as rather homogeneous lattices. This challenges the established opinion that hydrothermal syntheses yield relatively defect-free material and sheds further light on the internal morphology of crystals.

TXM-tomography unraveled large macropore defects within a MIL-47(V) MOF crystal. These pores do not seem to be well connected and they show a preferential orientation.     

Electrochemical characterisation of dental alloys: its possibilities and limitations

Dental alloys are metallic biomaterials which have a broad variation of composition compared to technical alloys. It is therefore in the interest of patients and technicians to conduct a good assessment of the electrochemical behaviour of dental alloys in order to collect information about their corrosion resistance. The purpose of this work was to demonstrate possibilities and limitations of two electrochemical techniques: the voltammetry of immobilised microparticles (ViMP) onto lead, and cyclic voltammetry measurements with the help of the mini-cell system (MCS). Based on fingerprints obtained from ViMP it was possible to analyse and differentiate the dental alloys. The results obtained by MCS were comparable with ViMP, but give a better understanding of the corrosion behaviour of the materials.     

Monolayer nanosheets formed by liquid exfoliation of charge-assisted hydrogen-bonded frameworks

Hydrogen-bonded organic frameworks (HOFs) are a diverse and tunable class of materials, but their potential as free-standing two-dimensional nanomaterials has yet to be explored. Here we report the self-assembly of two layered hydrogen-bonded frameworks based on strong, charge-assisted hydrogen-bonding between carboxylate and amidinium groups. Ultrasound-assisted liquid exfoliation of both materials readily produces monolayer hydrogen-bonded organic nanosheets (HONs) with micron-sized lateral dimensions. The HONs show remarkable stability and maintain their extended crystallinity and monolayer structures even after being suspended in water at 80 °C for three days. These systems also exhibit efficient fluorescence quenching of an organic dye in organic solvents, superior to the quenching ability of the bulk frameworks. We anticipate that this approach will provide a route towards a diverse new family of molecular two-dimensional materials.

We report the liquid-phase ultrasonic exfoliation of two layered hydrogen-bonded frameworks into monolayer, micron-sized, and water-stable nanosheets (HONs) connected purely by hydrogen-bonding interactions.     

Metal-peptide frameworks (MPFs): "bioinspired" metal organic frameworks

Chiral metal-organic frameworks (MOFs) have attracted a growing interest for their potential use in energy technologies, asymmetric catalysis, chiral separation, and on a more basic level, the creation of new topologies in inorganic materials. The current paper is the first report on a peptide-based MOF, a metal peptide framework (MPF), constructed from an oligovaline peptide family developed earlier by our group (Mantion, A.; et al. Macromol. Biosci. 2007, 7, 208). We have used a simple oligopeptide, Z-(L-Val)2-L-Glu(OH)-OH, to grow porous copper and calcium MPFs. The MPFs form thanks to the self-assembling properties of the peptide and specific metal-peptide and metal-ammonia interactions. They are stable up to ca. 250 degrees C and have some internal porosity, which makes them a promising prototype for the further development of MPFs.     

Assembly of robust and porous hydrogen-bonded coordination frameworks: isomorphism, polymorphism, and selective adsorption

By using the tripodal ligand ntb (tris(benzimidazole-2-ylmethyl)amine) and lanthanide nitrate, three isomorphous series of coordination frameworks of the general formula [Ln(ntb)(NO(3))(3)]·solvents (series 1: monoclinic C2/c, Ln = Gd(3+) and Yb(3+); series 2: hexagonal P3(1)/c, Ln = Nd(3+), Eu(3+), Gd(3+), and Er(3+); series 3, cubic Pa3?, Ln = Gd(3+) and Er(3+); solvent = H(2)O or CH(3)OH) have been assembled and characterized with IR, elemental analyses, and single crystal and powder X-ray diffraction methods. In all isomorphous complexes, analogous [Ln(ntb)(NO(3))(3)] coordination monomers of the same structure act as the building blocks to be assembled via hydrogen bonds into three-dimensional (3D) frameworks. So the complexes of the same lanthanide ion (for example, the Gd(3+) ion) from three isomorphous series form polymorphs, for example, monoclinic polymorph 1-Gd, hexagonal polymorph 2-Gd, and cubic polymorph 3-Gd. The single-crystal analyses revealed that the polymorphism was related to different fashions of hydrogen bonding interactions, which was caused by different crystallization conditions, leading to the formation of different 3D hydrogen-bonded frameworks showing distinct porous and topological structures. The monoclinic and hexagonal crystals contain 1D channels, while the cubic crystal is nonporous. The thermogravimetric analyses indicated that all polymorphic crystals have high thermal stability against the removal of guest molecules, and the robust porosity of the hexagonal crystals has been verified by temperature-dependent single-crystal-to-single-crystal measurements upon guest removal/uptake. The solvents adsorption study disclosed that the porous frameworks show high selectivity of benzene against toluene and xylene, while the gas adsorption measurements indicated a moderate H(2), CO(2), and MeOH storage capacity in contrast to low N(2) uptake. The solid-state photoluminescence of the Eu(3+) and Nd(3+) complexes in the near-infrared and visible region has also been investigated, offering examples with optical properties tunable by means of isomorphous replacement.     

Architectural diversity and elastic networks in hydrogen-bonded host frameworks: from molecular jaws to cylinders

Guest-free guanidinium organomonosulfonates (GMS) and their inclusion compounds display a variety of lamellar crystalline architectures distinguished by different "up-down" projections of the organomonosulfonate residues on either side of a two-dimensional (2D) hydrogen-bonding network of complementary guanidinium ions (G) and sulfonate moieties (S), the so-called GS sheet. Using a combinatorial library of 24 GMS hosts and 26 guest molecules, a total of 304 inclusion compounds out of a possible 624 possible host-guest combinations were realized, revealing a remarkable capacity of the GMS hosts to form inclusion compounds despite the facile formation of the corresponding guest-free compounds and the absence of "predestined" inclusion cavities like those in related guanidinium organodisulfonate host frameworks. The GS sheets in the inclusion compounds behave as "molecular jaws" in which organomonosulfonate groups projecting from opposing sheets clamp down on the guest molecules, forming ordered interdigitated arrays of the host organic groups and guests. Both the guest-free and inclusion compounds display a variety of architectures that reveal the structural integrity of two-dimensional GS sheet and the unique ability of these hosts to conform to the steric demands of the organic guests. Certain GMS host-guest combinations prompt formation of tubular inclusion compounds in which the GS sheet curls into cylinders with retention of the 2D GS network. The cylinders assemble into hexagonal arrays through interdigitation of the organosulfonate residues that project from their outer surfaces, crystallizing in high-symmetry trigonal or hexagonal space groups. This unique example of network curvature and structural isomerism between lamellar and cylindrical structures, with retention of supramolecular connectivity, is reminiscent of the phase behavior observed in surfactant microstructures and block copolymers. The large number of host-guest combinations explored here permits grouping of the inclusion compound architectures according to the shape of the guests and the relative volumes of the organomonosulfonate groups, enabling more reliable structure prediction for this class of compounds than for molecular crystals in general.