Probe the accumulation modes of the Au–C22H14 dimer on the structure and NLO properties

In 2006, the Au–C₂₂H₁₄ with a covalent bond between an individual pentacene (C₂₂H₁₄) and a gold (Au) atom was synthesised and characterised, and its nonlinear optical (NLO) properties were explored. To further investigate the NLO properties from molecules to materials, three kinds of different dimers (Au–C₂₂H₁₄)₂ (2, 3 and 4) were designed to probe the monomer accumulation modes on the structures and NLO properties. The results indicate that Au atoms doping breaks the conjugate structures of the two pentacenes to different extent. On the other hand, their NLO properties investigated by three density functional theory methods Becke-Half-and-Half-LYP (BHandHLYP), Coulomb-attenuating method Becke-3-Lee–Yang–Parr (CAM-B3LYP) and Minnesota 2005 double the amount of nonlocal exchange (M05-2X) show the same order, and 2 has the largest first hyperpolarisability (β_tot) than the other molecules. At the same time, natural bond orbital analysis shows the Au atoms play a crucial role in pushing electron density. Meanwhile, the frontier molecular orbital analysis shows that charge transfer has occurred between the two pentacene molecules and Au atoms. As a result, the order of transition energy is opposite to the order of β_tot values. Because the pentacene is taken as a simplified fragment of the graphene, our present work may be beneficial to the development of high-performance NLO materials.     

Raman spectroscopic study of the uranyl carbonate mineral zellerite

Raman and infrared spectra of the uranyl mineral zellerite, Ca[(UO₂)(CO₃)₂(H₂O)₂]·3H₂O, were measured and tentatively interpreted. U O bond in uranyl and O H···O hydrogen bonds were calculated from the vibrational spectra. The presence of structurally nonequivalent water molecules in the crystal structure of zellerite was inferred. A proposed chemical formula of zellerite is supported. Raman bands at 3514, 3375 and 2945 cm⁻¹and broad infrared bands at 3513, 3396 and 3326 cm⁻¹ are related to the ν OH stretching vibrations of hydrogen‐bonded water molecules. Observed wavenumbers of these vibrations prove that in fact hydrogen bonds participate in the crystal structure of zellerite. The presence of two bands at 1618 and 1681 cm⁻¹ proves structurally distinct and nonequivalent water molecules in the crystal structure of zellerite. Copyright © 2008 John Wiley & Sons, Ltd.     

H2O分子在Fe（100）, Fe（110）, Fe（111）表面吸附的第一性原理研究

采用第一性原理研究了H₂O分子在Fe（100）,Fe（110）,Fe（111）三个高对称晶面上的表面吸附.结果表明,H₂O分子在三个晶面上的最稳定结构皆为平行于基底表面的顶位吸附结构.H₂O分子与三个晶面相互作用的吸附能及几何结构计算结果表明H₂O分子与三个晶面的相互作用程度不同,H₂O分子与Fe（111）晶面的相互作用最强,其次是Fe（100）,相互作用最弱的是Fe（110）表面,而这与晶面原子 关键词： 第一性原理 Fe单晶表面 2O分子')" href="#">H₂O分子 分子吸附     

Two salts and the salt cocrystal of ciprofloxacin with thiobarbituric and barbituric acids: The structure and properties

Ciprofloxacin (CfH, C₁₇H₁₈FN₃O₃) crystallizes with 2‐thiobarbituric (H₂tba) and barbituric acid (H₂ba) in the aqueous solution to yield salt CfH₂(Htba)·3H₂O ( 1 ), salt cocrystal CfH₂(Hba)(H₂ba)·3H₂O ( 2 ), and salt CfH₂(Hba)·H₂O ( 3 ). The compounds are structurally characterized by the X‐ray single‐crystal diffraction. The numerous intermolecular hydrogen bonds N–H?O and O–H?O formed by water molecules, Htba^?/Hba^? and CfH₂⁺ ions, and H₂ba molecules stabilize the crystal structures of 1 to 3 . Hydrogen bonds form a 2D plane network in the salts of 1 and 3 and a 3D network in the salt cocrystal of 2 . There are different π‐π interactions in 1 to 3 . The compounds have been characterized by powder X‐ray diffraction, thermogravimetry/differential scanning calorimetry, and Fourier transform infrared spectroscopy. The compounds dehydration ends at 130°C to 150°C, and their oxidative decomposition is observed in the range of 250°C to 275°C.     

聚环氧琥珀酸阻硫酸钙垢机理的分子动力学模拟

在不同温度不同水分子环境中对聚环氧琥珀酸(PESA)阻垢剂与硬石膏晶体主要生长面(001)的相互作用进行了分子动力学模拟. 结果表明：在323～343 K时,不同水分子数中PESA都能有效阻止CaSO₄垢的生长;同一水分子数中,不同温度下的结合能比较接近. 体系的结合能主要由库仑能变(包括离子键)提供,硬石膏晶体中的Ca原子与PESA中的羰基O原子发生了成键作用. PESA中羧基O原子和水分子中H原子之间存在氢键作用,而范德华相互作用有助于该PESA-H₂O-CaCO₃相互作用体系的形成. O(PESA的羧基)-H(H₂O)、O(CaSO₄)-H(H₂O)和O(CaSO₄)-H(PESA)原子对的径向分布函数表明,溶剂分子对聚环氧琥珀酸阻硫酸钙的阻垢性能有影响.     

水分子对碳链的输运性质影响的第一性原理研究

用基于密度泛函理论的非平衡格林函数方法研究了水分子对7个碳原子组成的一维原子链的输运性质的影响.碳原子链放在具有有限截面的Al(100)电极中.研究发现，碳原子链上的水分子的数目和放置的位置的不同将对体系输运性质产生很大的影响.特别是，单个H₂O分子对碳链平衡电导的影响随其摆放位置的不同而出现奇偶振荡，例如，当位于奇数编号的碳原子上时，电导取极大值，当位于偶数编号的碳原子上时，取极小值.将两个H₂O分子置于不同的碳原子正上方时，在不同的位置平衡电导相差很大，在某些特殊的情况下原本受到抑止的第三个本征通道也有较大的贡献.此外，还研究了放置两个水分子时，体系的电流-电压(I-V)特性，随着水分子的数目和放置的位置不同，某些情况可能出现较大幅度的负微分电阻，而在另一些情况下却没有出现. 关键词： 平衡电导 透射谱 负微分电阻     

分层掺B和吸附H2O碳纳米管的结构稳定性及电子场发射性能

运用基于第一性原理的密度泛函理论,系统研究了处于外电场中分层掺B并吸附不同数目H₂O碳纳米管体系的结构稳定性和电子场发射性能. 研究表明:第3层掺B并吸附5个H₂O的B₃CNT+5H₂O体系结构最稳定,管帽处Mulliken电荷最密集,尤其与单独掺B的B₃CNT和单独吸附H₂O的B₃CNT+5H₂O相比,其Fermi能级处态密度分别     

Chemical reactions in cracks of aluminum crystals: Generation of hydrogen from water

Pure hydrogen is generated from water molecules which are dissociated by specific aluminum particles called activated Al powder. Reaction mechanism of Al atoms with H₂O molecules is investigated in micro-cracks of Al crystals. It becomes obvious that hydrogen atoms exist in Al crystal mainly in states of AlH₃ hydrides. It is concluded that virgin walls of micro-cracks right after the creation provide virtually Al radical atoms of (Al−) or (Al=) with one or two free bonds, which react with H₂O molecules via surface diffusion resulting in producing AlH₃ and eventually in producing H₂. The production of H₂ seems to be a result of micro-tribochemical reactions in cracks, which are produced by mechanical crushing of Al crystals in water; tips of cracks as stress-focused points play a major role to create AlH_3. Peculiar environments of nano-spaces in micro-cracks surrounded by reactive atoms enable us to realize unusual chemical reactions at low temperatures as exemplified in the present paper.     

Isotope exchange studies of the oxidation and reduction of SrTiO3 single crystal surfaces by water and hydrogen

Thermal desorption studies of chemisorbed D₂ and D₂O on a reduced SrTiO₃(111) surface reveal that D₂ causes the reduction of the crystal, whereas D₂O causes its oxidation. Thermal desorption of H₂¹⁸O indicates that there is a 15% exchange between the oxygen in the adsorbed water molecules and the lattice oxygen.     

Hydration effect on the electronic transport properties of oligomeric phenylene ethynylene molecular junctions

A first-principles computational method based on the hybrid density functional theory is developed to simulate the electronic transport properties of oligomeric phenylene ethynylene molecular junctions with H₂O molecules accumulated in the vicinity as recently reported by Na {\it et al.} [\wx{Nanotechnology}{18} 424001 (2007)]. The numerical results show that the hydrogen bonds between the oxygen atoms of the oligomeric phenylene ethynylene molecule and H₂O molecules result in the localisation of the molecular orbitals and lead to the lower transition peaks. The H₂O molecular chains accumulated in the vicinity of the molecular junction can not only change the electronic structure of the molecular junctions, but also open additional electronic transport pathways. The obvious influence of H₂O molecules on the electronic structure of the molecular junction and its electronic transport properties is thus demonstrated.     

Protonic conductivity and lithium intercalation in a new iron hydroxyphosphate hydrate: (H3O)[Fe(H2O)]3[H8(PO4)6]·3H2O

A new hydroxonium iron phosphate, (H₃O)[Fe(H₂O)]₃[H₈(PO₄)₆]·3H₂O, was synthesized through a precipitation route by means of acidic media. The crystal structure was solved by X-ray powder diffraction. Electrochemical characterizations, performed on this compound, show reversible intercalation of lithium and substantial lithium diffusion. Protonic conductivity is observed in agreement with the simultaneous presence of H₂O, hydrated protons and OH groups in the large intersecting tunnels of this intersecting tunnel structure.     

Raman spectroscopy of hydrogen‐arsenate group (AsO3OH) in solid‐state compounds: cobalt mineral phase burgessite Co2(H2O)4[AsO3OH]2·H2O

Raman spectrum of burgessite, Co₂(H₂O)₄[AsO₃OH]₂· H₂O, was studied, interpreted and compared with its infrared spectrum. The stretching and bending vibrations of (AsO₃) and As‐OH units, as well as the stretching, bending and libration modes of water molecules and hydroxyl ions were assigned. The range of O H···O hydrogen bond lengths was inferred from the Raman and infrared spectra of burgessite. The presence of (AsO₃OH)²⁻ units in the crystal structure of burgessite was proved, which is in agreement with its recently solved crystal structure. Raman and infrared spectra of erythrite inferred from the RRUFF database are used for comparison. Copyright © 2010 John Wiley & Sons, Ltd.     

E.P.R. study of γ-irradiated single crystals of K2C2O4.H2O and (NH4)2C2O4.H2O

The electron paramagnetic resonance of γ-irradiated single crystals of K₂C₂O₄.H₂O and (NH₄)₂C₂O₄.H₂O has been studied. The spectra show interesting microwave power saturation effects. The singlet spectrum is attributed to the C₂O₄ ^- radical derived from the C₂O₄ ^-- ion. The principal g-values are determined to be 1·998, 2·0028 and 2·0004. Certain weak lines are observed with different power saturation and interpreted as due to OH radicals derived from water molecules in the crystal lattice.     

Spectroscopic identification of the onset of the vibrational quasicontinuum in large molecules

We advance a new spectroscopic criterion for the identification of the threshold of the vibrational quasicontinuum (VQ) in large molecules, which rests on the observation of an onset for a congested vibrational level structure in the electronically excited states of isolated ultracold molecules seeded in supersonic beams. The onset of the VQ in tetracene (C₁₈H₁₂), pentacene (C₂₂H₁₄) and ovalene (C₃₂H₁₄) is exhibited at the excess vibrational energies of 2000 cm^-1 -1000 cm^-1.     

The chemisorption of pentacene on Si(0 0 1)-2 × 1

Adsorption structures of the pentacene (C₂₂H₁₄) molecule on the clean Si(0 0 1)-2 × 1 surface were investigated by scanning tunneling microscopy (STM) in conjunction with density functional theory calculations and STM image simulations. The pentacene molecules were found to adsorb on four major sites and four minor sites. The adsorption structures of the pentacene molecules at the four major sites were determined by comparison between the experimental and the simulated STM images. Three out of the four theoretically identified adsorption structures are different from the previously proposed adsorption structures. They involve six to eight Si-C covalent chemical bonds. The adsorption energies of the major four structures are calculated to be in the range 67-128 kcal/mol. It was also found that the pentacene molecule hardly hopped on the surface when applying pulse bias voltages on the molecule, but was mostly decomposed.     

Transport properties of carbon atomic wire in the environment of H2O molecules: An ab initio study

The transport properties of carbon atomic wire in the environment of H₂O molecules are studied by the non-equilibrium Green function method based on density functional theory. In particular, the carbon wire with seven atoms sandwiched between the Al(1 0 0) electrodes is considered. It is found that the transport properties are sensitive to the variation of the number and the position of the H₂O molecule adsorbed on the carbon wire. To our surprise, with different positions of a single H₂O molecule on the carbon wire, the equilibrium conductance shows an evident odd–even oscillatory behavior. For example, the equilibrium conductance of the carbon wire becomes bigger when the H₂O is adsorbed on the odd-numbered carbon atoms; an opposite conclusion is obtained for the H₂O adsorbed on the even-numbered carbon atoms. For the cases of two H₂O molecules, the equilibrium conductance varies largely and the contribution of the third eigenchannel becomes larger in some special configurations. The calculated current–voltage curves show different behavior with the variation of the positions of the H₂O molecules. In certain cases, large negative differential resistance (NDR) is shown, while in other cases, it only slightly deviates from the linear behavior. The above behavior is analyzed via the charge transfer and the density of states (DOS) and reasonable explanations are presented.     

Die Eigenschwingungen des Metall-Hydratkomplexes in BeSO4·4H2O und BeSO4·4D2O

Infrared reflection spectra of single crystals of BeSO₄·4H₂O and BeSO₄·4D₂O have been obtained in polarized light at 300°K and at 14°K in the region between 4000 cm^?1 and 300 cm^?1. By a Kronig-Kramers analysis, the frequencies of the infrared active transitions have been calculated. These transitions are attributed to internal vibrations of the water molecules and sulfate ions and, in the region between 1000 cm^?1 and 300 cm^?1, especially to internal and external vibrations of the tetrahedral Be⁺⁺·4aqu-complexes. The vibrational modes of these complexes consist of a superposition of translational and librational modes of the water molecules and translational modes of the central Be⁺⁺-ion. The vibrational frequencies and normal modes of this complex have been calculated in a central-force model, and force-constants have been determined by fitting the calculated frequencies to the observed spectra. The calculations have shown that the modes, which comprise mainly translational motions of the water molecules, are strongly coupled with librational motions of the water molecules. On the other hand, there exist pure librational modes with practically no admixture of translational motions. The optimum sets of force constants for the BeSO₄·4H₂O crystal and the BeSO₄·4D₂O crystal differ in a manner which can be understood under the assumption that the dimensions of the Be(D₂O)₄ complex are about 0.1 Å larger than those of the Be(H₂O)₄ complex. Some arguments supporting this conclusion will be discussed.     

The fluctuation hypothesis of hydrogen bonding

To describe the distortion perturbations of the water molecules in solutions the quantum-mechanical method of partial oscillators has been developed. This method allows one to separate in a simple manner two types of influences on vibrations of OH oscillators, viz. the intermolecular perturbations resulting in the different strengths of hydrogen bonds and intramolecular coupling between stretching vibrations. Here the coupling is treated quite strictly, whereas the intermolecular perturbations are introduced phenomenologically. The calculation of the distribution of distortions among molecules in liquid H₂O and D₂O induced by non-equivalency of the two hydrogen bonds of the water molecule has been made on the basis of the method developed, and the parameters of the mean statistical molecule have been found from the experimental spectrum of HOD. The depolarization ratios of vibrations in Raman spectra of the mean statistical molecules H₂O and D₂O have been computed as an illustration of the possibilities of the proposed calculation method. All the estimates show that the stretching oscillators of H₂O and D₂O molecules are significantly coupled in spite of the great distortion of the symmetry of water molecules in the liquid state.     

N-doping of pentacene by decamethylcobaltocene

We demonstrate n-type doping of pentacene with the powerful reducing molecule decamethylcobaltocene (CoCp₂^*). Characterization of pentacene films deposited in a background pressure of CoCp₂^* by X-ray photoemission spectroscopy and Rutherford backscattering confirm that the concentration of incorporated donor molecules can be controlled to a level as high as 1%. Ultraviolet photoemission spectroscopy show Fermi level (E _F) shifts toward unoccupied pentacene states, indicative of an increase in the electron concentration. A 1% donor incorporation level brings E _F to 0.6 eV below the pentacene lowest unoccupied molecular orbital. The corresponding electron density of ∼10¹⁸ cm⁻³ is confirmed by capacitance–voltage measurements on a metal–pentacene–oxide–silicon structure. The demonstration of n-doping suggests applications of CoCp₂^* to pentacene contacts or channel regions of pentacene OTFTs.     

Tuning the work function of graphene with the adsorbed organic molecules: first-principles calculations

We have investigated the energetics and work function (WF) of graphene (GR) with depositing pentacene (C₂₂H₁₄, PEN) and perfluorinated pentacene (C₂₂F₁₄, PFP) using the electronic structure calculations based on the density functional theory with van der Waals (vdW) corrections. Both molecules are adsorbed on GR in flat-laying form with the height of 3.2 Å through vdW interaction, and no explicit exchange of electrons was found between GR and adsorbed molecules. However, we found charge redistribution in the surface to interface region and this brings about the vacuum level shifts, Δ = ?0.06 eV for PEN and Δ = +0.10 eV for PFP, demonstrating that the work function of GR can be tuned by the physisorption of organic molecules.