Elucidation of a common structure of selective fibrinogen receptor antagonists

In this paper, we investigate the common structural and electrostatic parameters of a series of specific inhibitors of the IIb3 integrin. Molecular dynamics simulations with an explicit aqueous environment led to an original theoretical pattern. Our results may suggest that the studied non-peptide IIb3 antagonists developed upon the Arg-Gly-Asp ubiquitous recognition sequence, in fact, should mimic the C-terminus part of the fibrinogen chain. This assumption could, therefore, explain their specificity with respect to other Arg-Gly-Asp-dependent integrins.     

Synthese von α-Methyl-homocysteinthiolacton

Summary A facile high yield large scale methylation procedure affording2c is reported utilizing the N-[bis(methylthio)-methylen-protected derivative4a as an intermediate. The optical resolution of racemic2c is described leading to (S)-2b. In addition the thiolactone2c undergoes oxidative ring opening by bromine to the corresponding sulphonic acid5.

     

Bromination of polyfluorinated α,β-enones

Polyfluoroalkyl-,-enones readily add Br₂ to give ,ß-dibromoketones. The latter are readily and regioselectively dehydrobrominated to -bromo-,-enones on treatment with K₂CO₃ or NEt₃ Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 12, pp. 2134–2136, December, 1993.     

Charge-transfer complexes betweenp-toluidine and iodine in solution: A kinetic study

The kinetics of charge-transfer interaction betweenp-toluidine and iodine in methylene chloride was investigated in depth. Thethermal process of formation of theinner complex was found to proceed to an equilibrium. Thephotochemical process follows a different reaction coordinate, going through the formation of an exciplex between the excitedouter complex and the amine ground state. In both cases the same ionic complex (Am ₂I⁺I ₃ ^– , whereAm stands forp-toluidine) was detected as the final product.

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Kinetische Untersuchung der Charge-Transfer-Komplexe zwischenp-Toluidin und Jod

Zusammenfassung Die Kinetik der Charge-Transfer-Wechselwirkung zwischenp-Toluidin und Jod in Methylenchlorid wurde ausführlich untersucht. Derthermische Prozeß, der zur Bildung desinner-Komplexes führt, geht bis zu einem Gleichgewicht. Derphotochemische Prozeß folgt einer unterschiedlichen Reaktionskoordinate und verläuft über die Bildung eines Exziplexes zwischen dem angeregtenouter-Komplex und dem Amin im Grundzustand. In beiden Fällen wurde derselbe ionische Komplex (Am ₂I⁺I ₃ ^– , wobeiAm fürp-Toluidin steht) als Endprodukt festgestellt.

     

Ring opening of fluoroalkyl-containing α,β-epoxyketones by aromatic amines

Aromatic amines cause ,-epoxyketones containing a -fluoroalkyl group to undergo ring opening at the -position to give -amino--hydroxyketones.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 5, pp. 882–883, May, 1994.     

O-Heterocycles by the cyclization of side-chain bromomethoxylated 2′-acetoxychalcones

Summary The title chalcone derivatives react with aqueous sodium hydroxide of various concentrations to form aurones as the major product, together with small amounts of flavones. However, the introduction of 4-nitro or 4-chloro substituents resulted in the formation of flavones as the major product.

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O-Heterocyclen mittels Cyclisierung von an der Seitenkette brommethoxylierten 2-Acetoxychalconen

Zusammenfassung Die im Titel genannten Chalconderivate reagieren mit Natronlauge in verschiedenen Konzentrationen, wobei Aurone zusammen mit geringen Mengen an Flavonen entstehen. Die Einführung von 4-Nitro- oder 4-Chlor-Substituenten führte jedoch zur bevorzugten Bildung von Flavonen.

     

In Situ Crystallization of Bacterial Cellulose III. Influences of Different Polymeric Additives on the Formation of Microfibrils as Revealed by Transmission Electron Microscopy

Effects of polymer additives on the formation of microfibrils of bacterial cellulose have been examined by transmission electron microscopy. Among additives with different degrees of polymerization (DP) or substitution (DS), carboxymethyl cellulose sodium salt (CMC) with DP = 80 and DS = 0.57 is the most effective in producing separate, smaller-size microfibrils. By increasing the concentration of this CMC from 0.1 to 1.5%, the percentage of microfibrils measuring 3–7 nm wide is increased and levels off at around 1.0%. Other polymer additives such as xyloglucan are less effective than CMC in producing microfibrils with smaller sizes and the resulting microfibrils still tend to aggregate. The number of charged substituents and the molecular weight seem to be important factors in the production of highly separate smaller-size microfibrils. The reduction in average microfibril size is well correlated to the decrease in mass fraction of cellulose I in bacterial cellulose crystals. On the basis of these results, the mechanism of the crystallization of celluloses I and I is discussed. The effect of colony types, smooth and rough, on the formation of microfibrils in the presence of CMC is also described.     

Reaction of β-Cyclodextrin with N-2,3-Epoxypropylphthalimide. Preparation, Characterisation and Study of a New Substituted Cycloheptaamylose. Effects on the Water Solubility of Drugs

The reaction of -cyclodextrinwith N-2,3-epoxypropylphthalimide yielded a set of newamorphous host compounds with high solubility whichwas transmitted to the corresponding host-guestcomplexes. The structure was determined by comparing the 1H- and 13C-NMR spectra with those of theparent compound, the degree of substitution by integration of the corresponding NMR signals, and C, H,and N elemental analysis.     

The μ-and δ-opioid pharmacophore conformations of cyclic β-casomorphin analogues indicate docking of the Phe3 residue to different domains of the opioid receptors

Summary Cyclic -casomorphin analogues with a d-configured amino acid residue in position 2, such as Tyr-c[-Xaa-Phe-Pro-Gly-] and Tyr-c[-Xaa-Phe-d-Pro-Gly-] (Xaa=d-A₂bu, d-Orn, d-Lys) were found to bind to the -opioid receptor as well as to the -opioid receptor, whereas the corresponding l-Xaa² derivatives are nearly inactive at both. Low-energy conformers of both active and nearly inactive derivatives have been determined in a systematic conformational search or by molecular dynamics simulations using the TRIPOS force field. The obatained conformations were compared with regard to a model for -selective opiates developed by Brandt et al. [Drug Des. Discov., 10 (1993) 257]. Superpositions as well as electrostatic, lipophilic and hydrogen bonding similarities with the -opioid receptor pharmacophore conformation of t-Hpp-JOM-13 proposed by Mosberg et al. [J. Med. Chem., 37 (1994) 4371, 4384] were used to establish the probable -pharmacophoric cyclic -casomorphin conformations. These conformations were also compared with a -opioid agonist (SNC 80) and the highly potent antagonist naltrindole. These investigations led to a prediction of the -and -pharmacophore structures for the cyclic -casomorphins. Interestingly, for the inactive compounds such conformations could not be detected. The comparison between the -and -pharmacophore conformations of the cyclic -casomorphins demonstrates not only differences in spatial orientation of both aromatic groups, but also in the backbone conformations of the ring part. In particular, the differences in ² and ² (70°,-80°; 165°,55°) cause a completely different spatial arrangement of the cyclized peptide rings when all compounds are matched with regard to maximal spatial overlap of the tyrosine residue. Assuming that both the -and -pharmacophore conformations bind with the tyrosine residue in a similar orientation at the same transmembrane domain X of their receptors, the side chain of Phe³ as a second binding site has to dock with different domains.This paper is based on a presentation given at the 14th Molecular Graphics and Modelling Society Conference, held in Cairns, Australia, August 27–September 1, 1995.     

A new detection method for purines in thin-layer chromatography

Summary The separation of some purines by thin-layer chromatography, utilizing precoated plates with Silicagel R as stationary phase and the following mobile phases: i-butanol: methylethylketone: ammonium hydroxide 25%: water (40252015) and n-propanol: ammonium hydroxide 25%: water (80155) is reported.Visualisation of the spots has been achieved by spraying with aqueous 1% uranyl acetate and irradiating with UV both at 254 and 366 nm. The visual detection of a spot was 0.01 g.     

Zur Reaktion von Permethylcyclosilanen mit Halogenen

The series of ,-diiodopermethylpolysilanes, I(SiMe ₂) _n I, (n=4–6) andX(SiMe ₂)₄ X, (X=Cl, Br) has been prepared by the action of halogen on the corresponding cyclic compounds (SiMe ₂) _n . The mass spectra, NMR-, IR- andRaman-spectra of these compounds have been recorded.

Herrn Prof. Dr.Josef Schurz zum 60. Geburtstag gewidmet.     

Interaction of α,β-Unsaturated Ketones of the Adamantane Series with N,N'-Binucleophiles

The influence has been established of the structure of the initial ketone, the reactants, and the reaction conditions on the direction of the interaction of ,-unsaturated ketones of the adamantane series with hydrazine, phenylhydrazine, semicarbazide, thiosemicarbazide, urea, and thiourea. It was found that on interaction with hydrazine and phenylhydrazine both intermediate hydrazones and the final cyclization products, pyrazolines, were formed. Reaction with semicarbazide and thiosemicarbazide leads only to the synthesis of derivatives at the carbonyl group, semicarbazones and thiosemicarbazones, but with urea and thiourea leads to products of addition at the double bond.     

Reduction of Derivatives of α-Arylidene-α-(2-Thiazolyl)acetonitrile with Lithium Aluminum Hydride

The action of lithium aluminum hydride on derivatives of -arylidene--(2-thiazolyl)acetonitrile in absolute ether leads to reduction of the nitrile group without affecting the double bond conjugated with it. The reaction products are the corresponding substituted allylamines.__________Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 2, pp. 221–224, February, 2005.     

Polymorphism of Inclusion Complexes and Unsolvated Hosts. I. Trimorphism of the Host-Guest Complex of Gossypol with Dichloromethane. The Structure of the β-Phase

The formation of host-guest complexes of gossypol at different temperatures has been investigated for the same pressure and concentration. Gossypol forms three different clathrates with dichloromethane within the temperature interval of 22-36 °C. Single crystals of these three modifications (phases) were obtained and their crystallographic parameters measured. The structure of the -phase has been determined previously and the -phase is isostructural to the inclusion complex of gossypol with benzene, while the structure of the -phase has been solved during the present research. Crystals of C30H30O8·CH2Cl2 are triclinic, space group P1, a = 8.604(1), b = 11.858(2), c = 14.405(2) (Å), = 84.60(1), = 89.14(1), = 89.73(1)°, V = 1463(1) Å3, Z = 2, R = 0.089 for 2419 observed reflections.Under ambient conditions gossypol forms unstable tubulates of the -phase; the -phase is a stable cage-type clathrate (cryptate) and the host-guest complex of the -phase is a clathrate of intermediate tubulato-cryptate type.     

Conformational Heterogeneity of a Tripeptide in the Solid State and in Solution: Characterization of a γ-Turn Containing Incipient Hairpin in Solution

A terminally blocked tripeptide Boc--Ala-Aib--Ala-OMe 1 with noncoded amino acids forms a novel type of hairpin structure containing a -turn instead of a conventional -turn in the central loop region in solution. This new type structural motif was characterized by NMR and restraint molecular dynamics simulation study. In the solid state peptide 1 adopts an extended backbone conformation and self-assembles to form supramolecular -sheet.     

Synthesis and sorption properties of new hybrid chelating sorbents with β-alanine functional groups

A series of -aminopropylsilylated sorbents was obtained from different oxide supports (silica gels, silica fillers, macroporous glasses, alumina) and by the direct synthesis (hydrolytic polycondensation of tetraalkoxysilanes with -aminopropyltriethoxysilane). The highest degree of immobilization was achieved for silicas, while the most convenient solvent was methanol. Sorbents with -alanine functional groups were obtained by the subsequent reaction with acrylic acid. The degree of -carboxyethylation was 1.3–1.9, and the highest content of functional groups (v_COOH = 3.23 mmol g^–1) was achieved for carboxyethylated xero gel synthesized by the copolycondensation of tetraethoxysilane with -aminopropyltriethoxysilane. The sorbents containing -alanine possess a higher selectivity of Cu²⁺ ion sorption than the initial -aminopropylsilylated sorbents.__________Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 12, pp. 2620–2625, December, 2004.     

Quantum-chemical study of allylic and vinylic compounds of fifth-group elements

Energies and oscillator strengths of the long-wave electronic transitions for several conformers of allyl- and vinylamine and allyl- and vinylphosphine have been calculated by the semiempirical quantum-chemical MNDO method. The electronic structure of these molecules is discussed in detail, and the spectral and conformational effects ofn, and , conjugation are analyzed. Some suggestions concerning possible conjugation effects in the allylic compounds of As, Sb, and Bi are made.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 9, pp. 1551–1554, September, 1993.     

Donor-acceptor interaction of p,p′-dimethoxystilbene with α,β-dinitrostilbene

A study was carried out on the interactions of the Z and E forms of the indicated stilbenes in all four possible combinations. Charge transfer complexes are formed and only Z-p,p-dimethoxystilbene converts to its E form.A. N. Nesmeyanov Institute of Organometallic Compounds, Russian Academy of Sciences, 117813 Moscow. Translated from Izvestiya Akademii Nauk, Seriya Khimicheskaya, No. 1, pp. 210–211, January, 1992.     

Theoretical study of the electronic structure of diazomethane

The least-energy dissociation path of the ground state of CH₂N₂ was determined fromab initio calculations using in a complementary way basis sets of minimal size (STO-3G) and double-zeta (DZ) quality. The results indicate that the least-energy point of attack of the N₂ molecule on CH₂ (¹ A ₁) is roughly perpendicular to the molecular plane (93 °), the C and N atoms being almost co-linear (angle C-N-N203 ° with outermost N atom pointing away from CH₂). The potential barrier of 1.2 eV found previously on theC _2v dissociation path, disappears completely along the least-energy dissociation path (point groupC _s (out-of-plane)). These findings corroborate the Woodward-Hoffman rules for this process since the outermost orbitals of the two intersecting states found in point groupC _2v (...2b ₁ and ...8a ₁) both correlate to the same irreducible representation (10á) in point groupC _s (out-of-plane).Larger basis set calculations (DZ + polarization functions on all centers, 3d _c and 3d _N developed here), were also carried out on CH₂N₂ (¹ A ₁,³ A ₂ and¹ A ₂) at the¹ A ₁ equilibrium geometry and on CH₂ (³ B ₁) and N₂ (¹ _g ⁺ ) at their respective equilibrium geometries. These calculations, together with consideration of correlation energy differences, yieldD ₀ ⁰ (CH₂N₂,¹ A ₁) = 19 kcal/mole and vertical excitation energies of 67 and 73 kcal/mole for the³ A ₂ and¹ A ₂ states respectively. The latter value is in good agreement with the measured experimental value: 72.4 kcal/mole corresponding to the maximum of intensity in the¹ A ₂¹ A ₁ absorption band.     

Synthesis of (α-substituted α-aminophosphinic and α-aminophosphonic acids

The reaction of ketoximes with hypophosphorous acid resulted in previously unknown -substituted--aminophosphinic acids, which were oxidized into the corresponding -substituted--aminophosphonic acids.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 11, pp. 2729–2732, November, 1996.