Ab initio study of the complexes of halogen-containing molecules RX (X=Cl, Br, and I) and NH3: towards understanding the nature of halogen bonding and the electron-accepting propensities of covalently bonded halogen atoms

Ab initio calculations have been performed on a series of complexes formed between halogen-containing molecules and ammonia to gain a deeper insight into the nature of halogen bonding. It appears that the dihalogen molecules form the strongest halogen-bonded complexes with ammonia, followed by HOX; the charge-transfer-type contribution has been demonstrated to dominate the halogen bonding in these complexes. For the complexes involving carbon-bound halogen molecules, our calculations clearly indicate that electrostatic interactions are mainly responsible for their binding energies. Whereas the halogen-bond strength is significantly enhanced by progressive fluorine substitution, the substitution of a hydrogen atom by a methyl group in the CH(3)X...NH(3) complex weakened the halogen bonding. Moreover, remote substituent effects have also been noted in the complexes of halobenzenes with different para substituents. The influence of the hybridization state of the carbon atom bonded to the halogen atom has also been examined and the results reveal that halogen-bond strengths decrease in the order HC triple bond CX > H(2)C=CHX approximately O=CHX approximately C(6)H(5)X > CH(3)X. In addition, several excellent linear correlations have been established between the interaction energies and both the amount of charge transfer and the electrostatic potentials corresponding to an electron density of 0.002 au along the R-X axis; these correlations provide good models with which to evaluate the electron-accepting abilities of the covalently bonded halogen atoms. Finally, some positively charged halogen-bonded systems have been investigated and the effect of the charge has been discussed.     

Nitrosoalkenes: Synthesis and Reactivity

Some α- and β-halonitrosoalkenes 1 have been synthesized and characterized. The halogen atoms of the oxime precursors 2 can be substituted by alkoxy groups. Two kinds of cycloaddition reaction of 1 have been observed: (i) reaction of the NO group with dienes gives 3, 6-dihydrooxazine derivatives 6 which isomerise to epoxyepimines 7 in most cases of β-substituted nitrosoalkenes; (ii) if 4, 5-dihydrooxazines 22 are obtained, the cycloaddition of the nitrosoalkenes as 4π-component is presumed.     

A new unconventional halogen bond C?X···H?M between HCCX (X = Cl and Br) and HMH (M = Be and Mg): An ab initio study

In this article, a new type of halogen‐bonded complex YCCX···HMY (X = Cl, Br; M = Be, Mg; Y = H, F, CH₃) has been predicted and characterized at the MP2/aug‐cc‐pVTZ level. We named it as halogen‐hydride halogen bonding. In each YCCX···HMY complex, a halogen bond is formed between the positively charged X atom and the negatively charged H atom. This new kind of halogen bond has similar characteristics to the conventional halogen bond, such as the elongation of the C? X bond and the red shift of the C? X stretch frequency upon complexation. The interaction strength of this type of halogen bond is in a range of 3.34–10.52 kJ/mol, which is smaller than that of dihydrogen bond and conventional halogen bond. The nature of the electrostatic interaction in this type of halogen bond has also been unveiled by means of the natural bond orbital, atoms in molecules, and energy decomposition analyses. © 2009 Wiley Periodicals, Inc. J Comput Chem 2010     

Retention behaviour of 1,n-halo(alkylthio)alkanes in HPLC

The RPLC retention of 1,n-halo(alkylthio)alkanes on an ODS phase with methanol/water (95%/5%) has been investigated. Replacement of a methyl group in a dialkyl sulphide R-S-R by a halogen atom X, to yield the title compounds X-(CH₂)_n-S-R, generally results in a retention decrease. This retention loss results either from the halogen atom proper, or from its immediate vicinity, or from a reduced retention contribution of the alkyl units. The methylene groups (n) between halogen and sulphur produce somewhat greater retention than the methylene groups in the alkyl groups R.     

二(三氟乙酸)卤化钕催化体系中卤素对催化共轭双烯烃聚合的影响

众所周知,稀土配位催化剂用于共轭双烯的定向聚合,卤素是形成活性中心的必要条件之一。文献上对卤素在稀土催化剂中的作用曾有研究,但报导的都是非均相催化体系和三元催化体系。均相的二元催化体系中的卤素作用尚未见文献报导。鉴于从可溶性(CF₃COO)₂NdClEtOH-Et₃Al体系中分离出含卤素原子的活性体,研究卤素在该体系中的作用,对于活性催化剂的形成条件和催化聚合反应机制的了解都有意义。     

卤取代对三氮系1-3H原子转移互变异构影响的理论研究

用量子化学从头计算方法研究了卤取代对三氮系1-3H原子转移互变异构的影响,探讨卤取代对降低反应活化能和稳定N＝N双键的电子效应.对反应机理作出解释.     

Intramolecular Benzyne–Phenolate [4+2] Cycloadditions

An intramolecular benzyne–phenolate [4+2] cycloaddition is reported. Benzyne precursors, having vicinal halogen‐sulfonate functionalities, linked with a phenol(ate) by various tether groups undergo efficient intramolecular [4+2] cycloaddition by treatment with either Ph₃MgLi or nBuLi for halogen–metal exchange to form various benzobarrelenes.     

Crystal structures of palladium(II) ternary complexes of 5-x-2-aminobenzoic acid with 1,10-phenanthroline and their interaction with calf thymus DNA (where X=Cl, Br and I)

The crystal structures of a series of three palladium(II) ternary complexes of 5-halogeno-2-aminobenzoic acid (5-X-AB, where X=Cl, Br and I) with 1,10-phenanthroline [Pd(5-Cl-AB)(phen)] (1), [Pd(5-Br-AB)(phen)] (2) and [Pd(5-I-AB)(phen)] (3) have been determined, and their coordination geometries and the crystal architecture characterized. All of the complexes are an isostructure in which each Pd(II) atom has basically similar square planar coordination geometry. The substitute halogen group at 5-position of AB plays an important role in producing the coordination bonds of the carboxylate and amino groups in which the carboxylate O atom and the amino N atom act as the negative monodentate ligand atoms. The coordination bond distances of O-Pd increase in the order 1<2<3, while those of N-Pd decrease in the same order. The binding of the complexes to the calf thymus DNA has also been studied by the fluorescence method. Each of the complexes shows high binding propensity to DNA which can be reflected as the relative order 1<2<3.     

Participation of halogen atoms in hydrogen transfer between remote positions in gas-phase ionized isomeric haloresorcinols

Mono, di- and trihaloresorcinols substituted by a halogen atom at position 2 exhibit a highly specific elimination of H₂O on electron impact ionization and under conditions of collisionally induced dissociation (CID). The high isomer specificity suggests the intermediacy of a hydrogen transfer from one of the hydroxy groups to the adjacent halogen atom. A subsequent hydrogen migration to the other hydroxy group readily explains the facile elimination of H₂O from the M^+· ions of these particular isomers. An analogous three-step hydrogen transfer has not been observed in 2,3-dihalo-l,4-hydroquinones. 4-Bromo- and 4-icdoresorcinol undergo elimination of the halogen atom followed by a very fast loss of CO under CID conditions, affording [M ? Hal]⁺ ions of low abundance and highly abundant[M ? Hal ? CO]⁺ ions. The elimination of CO is suppressed in the isomeric 5-haloresorcinols, resulting in very highly abundant [M ? Hal]⁺ ions. This behavior suggests that a ‘hidden hydrogen transfer’ accompanies the elimination of the halogen atom from the molecular ions of 4-haloresorcinols.     

The nature of halogen...halogen synthons: crystallographic and theoretical studies

A study of the halogen...halogen contacts in organic compounds using ab initio calculations and the results of previously reported crystallographic studies show that these interactions are controlled by electrostatics. These contacts can be represented by the geometric parameters of the C--X1...X2--C moieties (where theta1=C--X1...X2 and theta2=X1...X2--C; ri=X1...X2 distance). The distributions of the contacts within the sum of van der Waals radii (rvdW) versus thetai (theta1=theta2) show a maximum at theta approximately 150 degrees for X=Cl, Br, and I. This maximum is not seen in the distribution of F...F contacts. These results are in good agreement with our ab initio calculations. The theoretical results show that the position of the maximum depends on three factors: 1) The type of halogen atom, 2) the hybridization of the ipso carbon atom, and 3) the nature of the other atoms that are bonded to the ipso carbon atom apart from the halogen atom. Calculations show that the strength of these contacts decreases in the following order: I...I>Br...Br>Cl...Cl. Their relative strengths decrease as a function of the hybridization of the ipso carbon atom in the following order: sp2>sp>sp3. Attaching an electronegative atom to the carbon atom strengthens the halogen...halogen contacts. An electrostatic model is proposed based on two assumptions: 1) The presence of a positive electrostatic end cap on the halogen atom (except for fluorine) and 2) the electronic charge is anisotropically distributed around the halogen atom.     

5-Iodo-1,2,3-triazolium-based multidentate halogen-bond donors as activating reagents

Bi- and tridentate polycationic halogen bond donors based on 5-iodo-1,2,3-triazolium groups have been synthesized by 1,3-dipolar cycloaddition reactions. These halogen-based Lewis acids have been evaluated as activators in a halide-abstraction benchmark reaction.     

Negative ions of transition metal-halogen clusters

A systematic density functional theory based study of the structure and spectroscopic properties of neutral and negatively charged MX(n) clusters formed by a transition metal atom M (M=Sc,Ti,V) and up to seven halogen atoms X (X=F,Cl,Br) has revealed a number of interesting features: (1) Halogen atoms are bound chemically to Sc, Ti, and V for n≤n(max), where the maximal valence n(max) equals to 3, 4, and 5 for Sc, Ti, and V, respectively. For n>n(max), two halogen atoms became dimerized in the neutral species, while dimerization begins at n=5, 6, and 7 for negatively charged clusters containing Sc, Ti, and V. (2) Magnetic moments of the transition metal atoms depend strongly on the number of halogen atoms in a cluster and the cluster charge. (3) The number of halogen atoms that can be attached to a metal atom exceeds the maximal formal valence of the metal atom. (4) The electron affinities of the neutral clusters abruptly rise at n=n(max), reaching values as high as 7 eV. The corresponding anions could be used in the synthesis of new salts, once appropriate counterions are identified.     

Synthesis of highly functionalised spiro-indoles by a halogen atom transfer radical cyclization

The halogen atom transfer radical cyclization (HATRC) has been evaluated on N-(indolylmethyl)trichloroacetamides under Cu(I)Cl catalysis using nitrogen containing ligands. The ring closure leads to the formation of 3,3-spiro-3H-indoles in moderate to good yields by a 5-exo-mechanism. Derivatives with an N-electron withdrawing substituent also lead to a 5-exo-trig and not to a 6-endo-trig cyclization.     

(Bu3Sn)2-TBAF: a new combination reagent for the reduction and deuteration of aryl bromides and iodides

The combination of (Bu(3)Sn)(2) and TBAF has been shown to reduce aromatic bromides and iodides in excellent yields under mild conditions. When the residual water in TBAF is exchanged for D(2)O, the halogen is replaced by a deuterium atom.     

[3 + 2] Cycloaddition of nitrile oxides to dichloropropenes and 1,3-dichlorobut-2-ene: A regioselectivity issue

The reaction of nitrile oxides with 2,3-dichloroprop-1-ene, 1,3-dichloroprop-1-ene, and 1,3-dichlorobut-2-ene leads to 5-(chloromethyl)isoxazoles, 4-(chloromethyl)isoxazoles, or to mixtures of both regioisomers. The direction of cycloaddition and reactivity of substrate is determined by the steric hindrance at the terminal carbon atom of the alkene double bond. It has been found that the isomeric products of cycloaddition of nitrile oxides to 1,3-dichloropropene have significantly different dehydrochlorination capabilities. The experimental data on the regioselectivity of cycloaddition and the relative reactivity of substrates are in agreement with the results of quantum chemical calculations.     

A new photoproduct of 5-methylcytosine and adenine: a theoretical study

Both the cycloaddition mechanism of 5-methylcytosine with adenine and the deamination mechanism of the cycloaddition product have been studied using density functional theory method. The results suggest that the cycloaddition reaction could occur more easily through photochemical reaction pathway than through thermal reaction pathway. The obtained four-member ring structure could be easily transformed to an eight-member ring structure through bond cleavage of C₅–C₆ (the energy barrier is <2 kcal/mol). Then hydrolytic deamination reaction takes place with water assistance. The hydroxyl group of one water molecule attacks the C₄^′ atom and the hydrogen atom of another water molecule attacks N₃^′ atom to form a tetrahedral intermediate. Subsequently, the hydrogen atom of hydroxyl group transfers to N₈^′ to produce ammonia, and the amino group of the former 5-methylcytosine changes to carboxyl oxygen. Our calculations explain the phenomena that 5-methylcytosine and adenine could obtain the same photoproduct as thymine and adenine from theoretical aspects.     

Properties of poly(3-halidethiophene)s

The influence of the halogen atom on the intrinsic properties of poly(3-halidethiophene)s has been investigated using experimental and theoretical methodologies. Specifically, the electrochemical, electrical, electronic and morphological properties of poly(3-bromothiophene) have been determined and compared with those recently reported for poly(3-chlorothiophene) [Aradilla et al., Polym. Chem., 2012, 3, 436.]. The electrochemical stability and porosity are smaller for poly(3-bromothiophene) than for poly(3-chlorothiophene) while the π-π* lowest transition energy is higher for the former than for the latter. Moreover, quantum mechanical calculations on model oligomers have evidenced that the conformational properties of poly(3-halidethiophene)s, where the halogen is fluorine, chloride or bromine, are dominated by steric interactions and, therefore, are significantly influenced by the size of the halogen atoms. Both the ionization potential and the π-π* lowest transition energy have been predicted to increase slightly when the π-donor character of the halogen atom decreases, in agreement with experimental observations.     

Investigations of imidazo[1,2-a]benzimidazoles 26. 2-Halomethylimidazo[1,2-a]benzimidazoles and their reactive properties

Treatment of 2-aminobenzimidazoles with 1,3-dichloroacetone or radical bromination of 3-alkoxycarbonyl- or 3-acetyl-2-methylimisazo[1,2-a]benzimidazoles leads to the 2-halomethyl derivatives of this heterocycle. The lability of the halogen atom in the synthesized compounds has been demonstrated.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 3, pp. 369–376, March, 1994.     

Intermolecular Halogen Bond Detected in Racemic and Optically Pure N-C Axially Chiral 3-(2-Halophenyl)quinazoline-4-thione Derivatives

The halogen bond has been widely used as an important supramolecular tool in various research areas. However, there are relatively few studies on halogen bonding related to molecular chirality. 3-(2-Halophenyl)quinazoline-4-thione derivatives have stable atropisomeric structures due to the rotational restriction around an N-C single bond. In X-ray single crystal structures of the racemic and optically pure N-C axially chiral quinazoline-4-thiones, we found that different types of intermolecular halogen bonds (C=S⋯X) are formed. That is, in the racemic crystals, the intermolecular halogen bond between the ortho-halogen atom and sulfur atom was found to be oriented in a periplanar conformation toward the thiocarbonyl plane, leading to a syndiotactic zig-zag array. On the other hand, the halogen bond in the enantiomerically pure crystals was oriented orthogonally toward the thiocarbonyl plane, resulting in the formation of a homochiral dimer. These results indicate that the corresponding racemic and optically pure forms in chiral molecules are expected to display different halogen bonding properties, respectively, and should be separately studied as different chemical entities.     

Action des derives du phosphore trivalent sur les composes a halogene positif—VII : Cycloaddition avec les sels d'(α-cetoceteniminyl) phosphonium

The reaction of phosphines (Ph₃P, (pMeC₆H₄)₃P) with α-cyano α-haloimides gives, by attack on halogen, an ion-pair, which rearranges into a (α-ketoketeniminyl)phosphonium salt. When P(NMe₂)₃ is used, the nucleophilic attack of the anion O-atom at the halophosphonium cation-P atom is also observed. The α-ketoketeniminyl phosphonium salts give α-haloiminophosphoranes or oxazines by cycloaddition with the anion of the ion pair.