毛细管电泳法分析维甲酸异构体

采用毛细管电泳分析方法对维甲酸异构体进行了分离。比较了区带电泳和胶束电动色谱两种模式对维甲酸异构体的分离效果。考察了缓冲液组成、pH值、乙腈含量以及十二烷基硫酸钠(SDS)浓度等对分离的影响。采用胶束电动色谱法可完全分离13-顺-和全反式-维甲酸,最佳的缓冲溶液为(20 mmol/L Tris-H3BO3(pH 8.5)-25 mmol/L SDS)-乙腈(体积比为80∶20)。该法首次应用于加标血浆中的维甲酸分析,获得了较好的结果。     

Conformational Analysis of Dibutylphosphorylacetic Acid N,N-Dibutylamide in Solution

Russian Journal of General Chemistry - Polarity of N,N-dibutylamide of dibutylphosphorylacetic acid has been determined and its conformational analysis has been carried out by the methods of dipole...     

Synthesis of Urinary Metabolites of Retinoic Acid

Urinary metabolites 5-methyl-5-[2-(2,6,6-trimethyl -3-oxo-1-cyclohexen-1-yl)-vinyl]-2-tetrahydrofuranone (1) and 5-[2-(6-hydroxymethyl-2, 6-dimethyl-3-oxo-1- cyclohexen-1-yl)vinyl]-5-methyl-2-tetrahydrofuranone (2) of retinoic acid have been synthesized from 4-[2,2,6-trimethyl-3-(tetrahydro-2 H -pyran-2-yl)oxy-1-cyclohexen-1-yl]-3-buten-2-one (4) and methyl 2-(3,3-ethylenedioxy-1-butenyl)-1, 3-dimethyl-4-oxo-2-cyclohexene-1-carboxylate (5) .     

气相色谱-质谱法检测沉积物中自由态与束缚态多溴联苯醚和四溴双酚-A

建立了一种同时测定沉积物中不同赋存形态的多溴联苯醚(PBDEs)和四溴双酚A(TBBPA)的分析方法.样品由等体积的丙酮和正己烷混合溶剂抽提得到自由态目标物,再通过碱性水解反应释放束缚态目标化合物.通过调节酸度(pH值)实现PBDEs和TBBPA的分离和提取.PBDEs由复合硅胶柱净化,运用气相色谱-质谱(负离子化学源)-分时段选择离子监测技术测定;TBBPA经重氮甲烷衍生化反应后由酸性硅胶柱预纯化,运用气相色谱-质谱(电子轰击源)-分时段选择离子监测技术测定.8种低溴联苯醚(BDE28,-47,-66,-100,-99,-154,-153,-183),十溴联苯醚(BDE209)和TBBPA的检出限分别为0.6～12.5 pg/g,172 pg/g,4 2 pg/g.方法具有良好的准确度和精确度,回收率均在74%～106%之间,RSD≤10%.对东江沉积物样品的分析表明,本方法能够实现不同形态的PBDEs 和TBBPA的有效检测.     

Conformational Transitions and Convergence of Absolute Binding Free Energy Calculations

The Binding Energy Distribution Analysis Method (BEDAM) is employed to compute the standard binding free energies of a series of ligands to a FK506 binding protein (FKBP12) with implicit solvation. Binding free energy estimates are in reasonably good agreement with experimental affinities. The conformations of the complexes identified by the simulations are in good agreement with crystallographic data, which was not used to restrain ligand orientations. The BEDAM method is based on λ -hopping Hamiltonian parallel Replica Exchange (HREM) molecular dynamics conformational sampling, the OPLS-AA/AGBNP2 effective potential, and multi-state free energy estimators (MBAR). Achieving converged and accurate results depends on all of these elements of the calculation. Convergence of the binding free energy is tied to the level of convergence of binding energy distributions at critical intermediate states where bound and unbound states are at equilibrium, and where the rate of binding/unbinding conformational transitions is maximal. This finding mirrors similar observations in the context of order/disorder transitions as for example in protein folding. Insights concerning the physical mechanism of ligand binding and unbinding are obtained. Convergence for the largest FK506 ligand is achieved only after imposing strict conformational restraints, which however require accurate prior structural knowledge of the structure of the complex. The analytical AGBNP2 model is found to underestimate the magnitude of the hydrophobic driving force towards binding in these systems characterized by loosely packed protein-ligand binding interfaces. Rescoring of the binding energies using a numerical surface area model corrects this deficiency. This study illustrates the complex interplay between energy models, exploration of conformational space, and free energy estimators needed to obtain robust estimates from binding free energy calculations.     

Free and Glycosidically Bound Volatiles of Mentha longifolia Growing in Croatia

The glycosides of volatile compounds and the essential oil were isolated from wild Mentha longifolia. After the enzymatic hydrolysis of glycosides, fourteen volatile aglycones were identified by GC/MS. The main aglycones were eugenol, 2-phenylethanol, benzyl alcohol, lavandulol, trans- and cis-carveol, 3-octanol, and 3-hexen-1-ol. The content of aglycones was 40.85 mg kg^-1 of dried plant material. The main components of the essential oil (yield 0.93 w/w) were carvone, piperitenone oxide, limonene, and -caryophyllene. Eugenol, carveol, 3-octanol, and -terpineol were identified in the aglycones and in the essential oil.     

Entrapment Efficiency of All-trans Retinoic Acid in Surfactant Vesicles

Spontaneous vesicles of dicetyl dimethyl ammonium chloride (DCDAC) and its mixture with sodium bis-(2-ethylhexyl) sulfosuccinate (AOT) are observed respectively in ethanol-water mixed solvents, which have been demonstrated by negative-staining transmission electric microscope (TEM) and atomic force microscope (AFM). Ethanol can promote the vesicle formation, especially to pure DCDAC surfactant system. The entrapment efficiency of the vesicles to all-trans retinoic acid (ATRA) was measured by the first order derivative spectrophotometry method. The entrapment efficiency of ATRA reaches 22% in 0.5 ethanol volume ratio solution when the concentration of DCDAC is 2.5 × 10^?3 mol/L. In the same solvents, the entrapment efficiency could be as high as 62% in 1:9 (molar ratio) DCDAC/AOT mixtures when the total concentration of surfactants is 3.0 × 10^?3 mol/L.     

An Improved Synthesis of Retinoic Acid from β-Ionone

A convenient and large-scale preparation of retinoic acid 1 from β-ionone in five steps with 38% overall yield is described.The key steps are the epoxidization of 2 with a new methylated agent and the condensation 4 with tetraethyl methylenediphophonate in one-pot procedure to prepare 6.     

Conformational Analysis and Chromic Acid Oxidation. Oxidation Rates and Equilibrium Constants of Epimeric Alcohols

The linear free energy relationship of Sicher for relative reactivity towards chromic acid oxidation (ΔΔG) as a function of thermodynamic stability (ΔG) has been reexamined with 23 pairs of epimeric alcohols. The plot of ΔG vs. ΔG has a slope of 0.8, a correlation coefficient of 0.97 and a standard deviation of 0.23 kcal/mol on ΔΔG_Ox. The limitations of the relationship and the exceptions are discussed.     

Wittig-Horner 反应合成维A酸酯的改进方法

改进了Wittig-Horner反应合成维A酸酯的方法,利用3-甲基5-(2,6,6-三甲基-1-环已烯-1-基)-1,3(或1,4)-戊二烯膦酸二烷基酯直接与五碳醛反应合成目标产物,省掉了碱催化下的双键重排反应。将含有C^1末端双键的膦酸二烷基酯直接用于wittig-Horner反应。     

Dielectric and Calorimetric Characteristics of Bound and Free Water in Surfactant-Based Systems

The hydration behavior of the system polyoxyethylene (10) oleylalcohol [C_18:1 (EO)₁₀ or Brij 97]/water/dodecane/butanol (model system B) was investigated along a dilution line for which the respective weight ratio of dodecane:butanol:Brij 97 is 3:3:4. Two experimental methods were applied: time domain dielectric spectroscopy (TDDS) and sub-zero temperature differential scanning calorimetry (SZT-DSC). Two types of bound water (with melting peaks at -25 and -11°C) were detected by SZT-DSC (using the endothermic mode), whereas TDDS revealed only one such type. Nevertheless, roughly the same total amount of bound water was estimated from these two techniques. The average number of bound water molecules per ethylene oxide (EO) group, N_W/EO is 2.3 (TDDS data) or 2.5 (SZT-DSC data) in good agreement with the observation that 1–2 water layers are formed in the hydration of ethoxylated surfactants. We have also shown that butanol is involved in the formation of the bound water that melts at -25°C. We suggest that butanol molecules occupy binding sites within the second hydration shell, thereby reducing the expected total bound water content.     

Gas-Phase Conformational Map of the Amino Acid Isovaline

Four conformers of the non-proteinogenic α-amino acid isovaline, vaporized by laser ablation, are characterized by Fourier-transform microwave techniques in a supersonic expansion. The comparison between the experimental rotational and ¹⁴N nuclear quadrupole coupling constants and the ab initio calculated ones provides conclusive evidence for the identification of the conformers. The most stable species is stabilized by an N−H⋅⋅⋅O =C intramolecular hydrogen bond and a cis-COOH interaction, whereas the higher-energy conformers exhibit an N⋅⋅⋅H−O intramolecular hydrogen bond and trans-COOH, as in other aliphatic amino acids. The spectroscopic data herein reported can be used for the astrophysical purpose in a possible detection of isovaline in space.     

Infrared Spectra of Alkylphosphonic Acid Bound to Aluminium Surfaces

Summary: The infrared absorption (IR) spectrum of alkyl phosphonic acid adsorbed on the α-Al₂O₃ (0001) surface has been calculated by means of a density-functional based tight-binding method. Thereby mono-dentate, bi-dentate and tri-dentate bonding of the acid to the surface have been considered. In addition, experimentally obtained Fourier Transform Infrared Spectra (FTIR) of octadecylphosphonic acid (ODPA) on the natural surface of aluminium have been included. The absence of the PO band in the experimental surface spectrum and in the calculated spectrum of the tridentate adsorption complexes showed that adsorption of (alkyl)phosphonic acids on aluminium favours tridentate bonding, where the acid is bound to the surface via three symmetric P O Al bonds.     

稀土-全反式维甲酸-缬氨酸三元配合物的合成、表征及抗肿瘤活性检测

在无水乙醇介质中,合成了4种新型稀土三元固体配合物。 通过红外光谱、紫外光谱、元素分析和TG-DTA等技术手段测试,确定了配合物的化学组成为:REL₂L'·nH₂O (RE:Nd³⁺,Eu³⁺,La³⁺,Sc³⁺;L=全反式维甲酸;L'=L-缬氨酸)。 利用MTT测试法,检测了配合物对体外培养的人肝癌细胞HepG2、人肺癌细胞A549和人宫颈癌细胞Hela生长的影响。 结果表明,4种稀土配合物与稀土硝酸盐、配体全反式维甲酸和L-缬氨酸对3种癌细胞株的生长均有一定的抑制作用,但在一定的浓度范围内,三元固体配合物的抑制效果明显优于稀土硝酸盐和2种配体;稀土配合物对3种癌细胞株生长的抑制作用基本上随浓度的升高而增强,存在一定的时间依赖性和浓度依赖性。 为了进一步阐明抗肿瘤作用的原因,利用光谱方法和黏度法的手段,对配合物与DNA之间的相互作用方式做了考察,推测配合物抗肿瘤活性的起效与这种嵌入DNA双螺旋结构的作用方式有关。     

Isolation and Identification of Three Major Metabolites of Retinoic Acid from Rat Feces

Following the intraperitoneal administration of high doses of ¹⁴C- and ³H- labelled retinoic acid (1) to rats, three major metabolites and the intact compound were isolated from the feces in microgram amounts by use of column, thin-layer and high-pressure liquid chromatography. Their structures were elucidated by mass spectrometry and Fourier Transform ¹H-NMR. spectroscopy as 2 (all-trans-4-oxoretinoic acid), 3 (7-trans-9-cis-11-trans-13-trans-5′-hydroxy-retinoic acid). Hydroxylation of the 5-methyl group of the cyclohexene ring, oxidation of the cyclohexene ring in position 4 and cis-trans isomerisation of the nonatetraenoic acid side chain were the reactions, which produced these products from retinoic acid. The metabolites 2 and 4 each accounted for about 4% of the radioactivity administered. The metabolite 3 and the parent compound accounted for about 16% and 17% of the dose, respectively.     

Conformational Analysis of Epiquinine and Epiquinidine

The conformational potential energy surfaces for the epiquinine and epiquinidine molecules were analyzed in gas phase and water solution using semiempirical and ab initio levels of theory. The results obtained showed that the main conformation of the nonactive threo epimers is distinct from those observed for the active parent compounds quinine and quinidine. This result might be used, on a qualitative way, to understand the loss of activity of the threo epimers and allow selecting important conformations to be considered in molecular modeling quantitative studies addressing the drug–receptor interactions.     

Exploring the Free Energy and Conformational Landscape of tRNA at High Temperature and Pressure

A combined temperature‐ and pressure‐dependent study was employed to reveal the conformational and free‐energy landscape of phenylalanine transfer RNA (tRNA^Phe), a known model for RNA function, to elucidate the features that are essential in determining its stability. These studies also help explore its structural properties under extreme environmental conditions, such as low/high temperatures and high pressures. To this end, fluorescence and FTIR spectroscopies, calorimetric and small‐angle scattering measurements were carried out at different ion concentrations over a wide range of temperatures and pressures up to several hundred MPa. Compared with the pronounced temperature effect, the pressure‐dependent structural changes of tRNA^Phe are small. A maximum of only 15 % unpaired bases is observed upon pressurization up to 1 GPa. RNA unfolding differs not only from protein unfolding, but also from DNA melting. Its pressure stability seems to be similar to that of noncanonical DNA structures.