Structure-based study of antiamyloidogenic cyclic d,l-α-peptides

Protein misfolding and aggregation are the hallmarks of many devastating diseases. We have previously shown that cyclic d,l-α-peptide CP-2 reacts and stabilizes less toxic forms of amyloid β (Aβ), and protects the cells from Aβ-induced toxicity. Here, we performed extensive structure-based studies on CP-2 to elucidate the contribution of each residue to the total antiamyloidogenic activity and determine the interactions that are involved between CP-2 and Aβ. We showed that the hydrophobicity of CP-2 analogs correlates with their antiamyloidogenic potency, however, aromatic interactions are even more important for this activity. The antiamyloidogenic activity of CP-2 analogs also correlates with their ability to self-assemble, as shown by the critical micelle concentration measurements. The cell survival studies performed on rat pheochromocytoma PC-12 cells suggest that incorporation of an additional aromatic residue to the CP-2's sequence increases its protective effect against Aβ42-induced toxicity.     

Direct access to new β-d-galactofuranoconjugates: application to the synthesis of galactofuranosyl-l-cysteine and l-serine

Galactofuranose post-translational modifications, although quite rare, were detected in some biomolecules produced by parasites. While hexopyranosides were already linked to various peptides and proteins, few hexofuranosides have been artificially conjugated to amino acids. We thus report herein a robust glycosylation methodology to obtain S-alkyl, O-serine and S-cysteine-β-d-galactofuranosides starting from readily available galactofuranose donors. O-Acetyl, thioimidoyl and acetimidoyl donors were compared in terms of yields and selectivity when reacted with mercaptans, l-cysteine and l-serine. Acetimidates turned out to be the best notably for amino acids glycosylation.     

Blends as a strategy towards tailored hydrolytic degradation of poly(?-caprolactone-co-d,l-lactide)-poly(ethylene glycol)-poly(?-caprolactone-co-d,l-lactide) co-polymers

Binary blends were prepared from poly(?-caprolactone) (PCL), and P(CL-co-d,l-lactic acid)-P(ethylene glycol)-P(CL-co-d,l-lactic acid) co-polymers, where the d,l-LA content in the side chains varied from 0 to 70 mol%. Blend discs were fabricated by melt-molding, and the effect of blend composition on hydrolytic degradation was studied. Variations in medium pH were monitored, and morphological changes were observed using scanning electron microscopy. Blending of these co-polymers was found to constitute a simple means by which intermediate rates of water absorption and mass loss were obtained, compared to those observed in pure co-polymer preparations. In one of the blends, prepared from the two components containing 70 or 0 mol% d,l-LA in the side chains and thereby exhibiting large differences in degradation rate, hydrolysis resulted in the formation of a porous material over time. Furthermore, all blend samples maintained their initial shape throughout the study. Such materials may be interesting for further investigations for applications in cellular therapy and controlled release.     

Synthesis of chiral thiourea–phosphine organocatalysts derived from l-proline

A novel class of thiourea–phosphine was prepared from l-proline as a chiral renewable resource. The original structure of the chiral framework offers an interesting potential to the construction of bifunctional organocatalysts for asymmetric transformations.     

Synthesis of d-fructopyranosides with 2-O-acyl-β-d-fructopyranosides

Glycosylation of 2-O-acyl fructopyranosides was investigated, which were shown to be effective glycosyl donors for d-fructopyranoside synthesis with good β-selectivity and yields. For bulky acceptor 4e, α-anomer 5e was obtained with α/β = 65:23. Unexpected ring-opening was observed during acetylation of 9, indicating the sensitivity of the fructopyranosyl ring.     

Synthesis and RNA-selective hybridization of α-l-ribo- and β-d-lyxo-configured oligonucleotides

Three α-l-ribofuranosyl analogues of RNA nucleotides (α-l-RNA analogues) have been synthesized and incorporated into oligonucleotides using the phosphoramide approach on an automated DNA synthesizer. The 4′-C-hydroxymethyl-α-l-ribofuranosyl thymine monomer was furthermore synthesized. Relative to the unmodified duplexes, incorporation of a single α-l-RNA monomer into a DNA strand leads to reduced thermal stability of duplexes with DNA complements but unchanged thermal stability of duplexes with RNA complements, whereas incorporation of more than one α-l-RNA monomer lead to moderately decreased thermal stability also of duplexes with RNA complements. Efficient hybridization with an RNA complement and no melting transition with a DNA complement were observed with stereoregular chimeric oligonucleotides composed of a mixture of α-l-RNA and affinity enhancing α-l-LNA monomers (α-l-ribo-configured locked nucleic acid). Furthermore, duplexes formed between oligodeoxynucleotides containing an α-l-RNA monomer and complementary RNA were good substrates for Escherichia coli RNase H. RNA-selective hybridization was also achieved by the incorporation of 1-(4-C-hydroxymethyl-β-d-lyxofuranosyl)thymine monomers into a DNA strand, whereas stable duplexes were formed with both complementary DNA and RNA when these monomers were incorporated into an RNA strand.     

Enzymatic synthesis of ω-carboxy-β-hydroxy-(l)-α-amino acids

Commercially available ω-carboxy-aldehydes and glycine have been subjected to the catalytic action of an l-threonine aldolase from Escherichia coli to give the corresponding β-hydroxy-α-(l)-amino acids as a mixture of erythro/threo epimers.Specifically, the reaction with glyoxylic acid (2) gave the epimeric β-hydroxy-(l)-aspartates (t,e)-9 that could be isolated by ion-exchange chromatography in 67% yield. Following esterification and N-Boc protection, the two epimers could be isolated as pure compounds.Similarly, the aldolase-catalyzed addition of glycine to succinic semialdehyde (4) gave the expected mixture of β-hydroxy-l-α-aminoadipic acids (t)-12 and (e)-12 in 34% yield.     

Synthesis and anti-HIV activity of l-β-3′-C-cyano-2′,3′-unsaturated nucleosides and l-3′-C-cyano-3′-deoxyribonucleosides

An efficient synthetic method was developed for l-β-3′-C-cyano-2′,3′-unsaturated nucleosides and l-3′-C-cyano-3′-deoxyribonucleosides. The key intermediate 11 was obtained from l-xylose, from which a series of pyrimidine and purine nucleosides were prepared in high yield by the coupling of 11 and various silyl-protected bases in the presence of TMSOTf. These nucleosides were eliminated, followed by deprotecting to give l-β-3′-C-cyano-2′,3′-unsaturated nucleosides. When selectively deprotected by hydrazine hydrate in buffered acetic acid-pyridine followed by treatment with potassium carbonate in methanol, l-3′-C-cyano-3′-deoxyribonucleosides were obtained. The synthesized nucleosides were tested for anti-HIV activity.     

A novel amperometric biosensor based on a co-crosslinked l-lysine-α-oxidase/overoxidized polypyrrole bilayer for the highly selective determination of l-lysine

An amperometric biosensor for the determination of l-lysine based on l-lysine-α-oxidase immobilized by co-crosslinking on a platinum electrode previously modified by an overoxidized polypyrrole film is described. The optimization of experimental parameters, such as pH and flow rate, permitted to minimize significantly substrate interferences even using a low specific, commercial enzyme. The relevant biases introduced in the measurement of lysine were just about 1% for l-arginine, l-histidine and l-ornithine, roughly 4% for l-phenylalanine and l-tyrosine. The developed approach allowed linear lysine responses from 0.02 mM up to 2 mM with a sensitivity of 41 nA/(mM × mm²) and a detection limit of 4 μM (S/N = 3). No appreciable loss in lysine sensitivity was observed up to about 40 days. Allowing polypyrrole layer to remove interference from electroactive compounds, the present method revealed suitable to detect l-lysine in a pharmaceutical and cheese sample, showing a good agreement with the expected values.     

l-Galactose as a natural product: isolation from a marine octocoral of the first α-l-galactosyl saponin

Saponine 1 (6′-O-acetyl-3β-pregna-5,20-dienyl-α-l-galactopyranoside), that contains a l-galactose moiety linked to the aglycone through an infrequent α-glycosidic bond, has been isolated from the marine octocoral Muricea c.f. purpurea. This constitutes the first report on the occurrence of l-Gal as a nonpolymeric natural product. A CD procedure for the absolute stereochemical assignment of saponins, based on the CD analysis of its perbenzoylated derivative, is proposed.     

Synthesis, characterization and degradability of the comb-type poly(4-hydroxyl-ε-caprolactone-co-ε-caprolactone)-g-poly(l-lactide)

The novel comb-type biodegradable graft copolymers based on ε-caprolactone and l-lactide were synthesized. Firstly, 2-oxepane-1,5-dione (OPD) was synthesized by the Baeyer-Villiger oxidation of 1,4-cyclohexanedione, and was subsequently copolymerized with ε-caprolactone (CL) to produce poly(2-oxepane-1,5-dione-co-ε-caprolactone) (POCL) catalyzed by stannous(II) 2-ethylhexanoate in toluene. Then, POCL was converted into poly(4-hydroxyl-ε-caprolactone-co-ε-caprolactone) (PHCL) using sodium borohydride as reductant. Finally, poly(4-hydroxyl-ε-caprolactone-co-ε-caprolactone)-g-poly(l-lactide) (PHCL-g-PLLA) were prepared successfully by bulk ring-opening polymerization of l-lactide using PHCL as a macro-initiator. All the copolymers have been characterized by ¹H and ¹³C NMR, DSC, and GPC. Compared with the random copolymer of poly(CL-co-LA), the elongation is highly increased. And the thermal analysis showed that the crystallization rate of the PCL backbone in the graft copolymers was greatly reduced compared to the PCL homopolymer. The hydrolytic degradation of the copolymer was much faster in a phosphate buffer (pH = 7.4) at 37 °C, which is confirmed by the weight loss and change of intrinsic viscosity.     

Photodegradation of biodegradable polyesters: A comprehensive study on poly(l-lactide) and poly(?-caprolactone)

The photodegradation of melt-crystallized and amorphous-made poly(l-lactide) (PLLA-C and PLLA-A, respectively) and cast-crystallized poly(?-caprolactone) (PCL) was investigated comprehensively for the periods up to 200 h using gel permeation chromatography, differential scanning calorimetry, tensile testing, and polarization optical microscopy. The photodegradation of PLLA and PCL films proceeds via a bulk erosion mechanism, indicating that UV penetrates the specimens with no significant reduction in its intensity, irrespective of the chemical structure and the crystallinity of biodegradable polyesters. The photodegradability of PCL chains was higher than that of PLLA chains. This strongly suggests that the chemical structure of the two sequential groups adjacent to the ester oxygen rather than the density of ester group is crucial to determine the photodegradability of biodegradable polyesters. Although PLLA chains are photodegradable even in the crystalline regions, their photodegradability is lower than that in the amorphous regions. The significant increase in weight-average molecular weight (M_w)/number-average molecular weight (M_n) was observed for PLLA-A and PCL films, even when the decrease in M_n by UV irradiation was small. Most of the tensile properties of PLLA and PCL films remained unchanged during UV irradiation, while solely the elongation at break of PCL film significantly decreased. This result reflects that among the tensile properties the elongation at break was most sensitive to the change in molecular characteristics of biodegradable polyesters by UV irradiation. The contrast between bright and dark parts of Maltese crosses remained unchanged for the spherulites in PLLA-C and PCL films even after UV irradiation for 200 h. This result exhibits that the cleaved fraction of the tie chains was too low to cause the traceable disorientation of lamellae.     

Increasing the inhibitory potency of l-arabino-imidazolo-[1,2]-piperidinose towards β-d-glucosidase and β-d-galactosidase

The synthesis of some potent inhibitors of two retaining β-glycosidases was achieved by introducing aglycon-mimics into the imidazole moiety of l-arabino azasugar 1. The strongest inhibition was observed with the phenyl-ethyl substituent at C(2) of 1 against β-d-galactosidase and β-d-glucosidase, whereas the hydroxymethyl group at C(2) increased only slightly the inhibitory properties.     

Supramolecular structures from self-assembled poly(γ-benzyl-l-glutamate)-polydimethylsiloxane-poly(γ-benzyl-l-glutamate) triblock copolypeptides in thin films

We describe the self-assembly of A-B-A triblock copolymers in thin films composed of a soft polydimethylsiloxane (PDMS) central block (B) and two polypeptidic (A) blocks, poly(γ-benzyl)-l-glutamate (PBLG). The PBLG segment exhibits depending on the chain length two distinct secondary conformations either a β-sheet or a α-helical conformation. The direct relationship between the surface morphology and the secondary conformation of the polypeptide segment has been evidenced by atomic force microscopy. For chain lengths below 20 U the polypeptide segments adopt preferentially a β-sheet secondary structure and the triblock copolymer self-assembled in fibers. Moreover, the fiber diameters increased with the chain length of the triblock copolymer. For chain lengths above 20, the α-helical structure is stabilized and a lamellar morphology is formed driven by rod-rod interactions in spite of the very asymmetric composition of the triblock copolymer. However, decreasing the film thickness from 25 to 8 nm, i.e., below the L/2 and due to the preferential attraction of the polypeptide block for the hydrophilic substrate employed, instead of a lamellar morphology a rod-like morphology could be found. Thus, the use of hybrid block copolymer containing polypeptides with particular secondary structures offers novel alternatives to control the self-assembly in thin films compared to traditional amorphous block copolymers.     

Synthesis of quercetin 3-O-β-d-apiofuranosyl-(1→2)-[α-l-rhamnopyranosyl-(1→6)]-β-d-glucopyranoside

A concise method to construct a unique 2,6-branched trisaccharide was established by regioselective glycosylation of three free hydroxyl groups on a 3-O-protected glucose moiety, and successfully used in the synthesis of quercetin 3-O-β-d-apiofuranosyl-(1→2)-[α-l-rhamnopyranosyl-(1→6)]-β-d-glucopyranoside, a flavonol O-glycoside isolated from glandless cotton seeds which showed notable antidepressant activities.     

Synthesis,structural, and spectral studies of diorganotin(IV) complexes with 2–hydroxy-5-methylbenzaldehyde-N(4)-cyclohexylthiosemicarbazone

Three new diorganotin(IV) complexes, [Me₂Sn(L)] (2), [Bu₂Sn(L)] (3), and [Ph₂Sn(L)] (4) [where H₂L (1) = 2-hydroxy-5-methylbenzaldehyde-N(4)-cyclohexylthiosemicarbazone] have been synthesized by reacting the corresponding diorganotin(IV) dichloride with H₂L (1) in absolute methanol in the presence of potassium hydroxide. All the compounds have been characterized by CHN analyses, UV–vis, FT-IR, ¹H, ¹³C, and ¹¹⁹Sn NMR spectroscopy. The molecular structures of H₂L (1) and 2 have been confirmed by single crystal X-ray diffraction analysis. H₂L (1) is found to be in the thiol tautomeric form. The X-ray structure of 2 showed that H₂L is a tridentate ligand and binds to the tin(IV) atom via the phenolic oxygen, azomethine nitrogen, and thiolate sulfur. Complex 2 has a triclinic structure and the coordination geometry of tin(IV) is distorted trigonal bipyramidal. The sulfur and oxygen are in axial positions while the azomethine nitrogen of 1 and two methyl groups occupy the equatorial positions. The C-Sn-C angles determined from ¹J(¹¹⁹Sn, ¹³C) for 2, 3, and 4 are 124.35°, 123.11°, and 123.82°, respectively. The values of δ(¹¹⁹Sn) for 2, 3, and 4 are ?153.4, ?180.59, and ?158.3 ppm, respectively, indicating five-coordinate tin(IV). From NMR data a distorted trigonal-bipyramidal configuration at each tin is proposed.     

Entry to nitrogen-containing heterocycles by based-promoted heterocyclization on allenylamides of l-α-aminoacids

Allenylamides of Boc-protected α-aminoacids easily gave in basic medium heterocyclic products arising from attack of the NH group on the inside C-C double bond of the 1,2-diene moiety, namely imidazolidinones, pyrazinones, and a pyrrole compound. The microwave-assisted heterocyclization occurred cleanly at C-β of the allenyl group with formation of pyrazin-2-ones having an endo- or exocyclic double bond.     

Nitrone in l-lyxose series: cycloaddition way for the synthesis of new C-α-fucosides

Nitrone 3 analogue of 5-deoxy-l-lyxose was derived from d-ribose. Its reduction with aqueous SO₂ gave the corresponding 4-amino-sugar 2, a potent α-l-fucosidase inhibitor. 1,3-Dipolar cycloaddition of 3 with alkenes allowed the synthesis of acetohydroxamic acid and ethane-phosphonate derivatives. Hydroxy-ethane derivative 15 is a nanomolar α-l-fucosidase inhibitor.     

Synthesis,characterization and oxidase catalytic activity of vanadium(IV) and oxovanadium(IV) complexes with Schiff base ligands derived from β-diketones

New complexes of vanadium(IV) and oxovanadium(IV) with Schiff base ligands derived from -diketones and ethanolamine or o-aminophenol have been prepared and characterized by elemental analyses, electrical conductance, magnetic moment measurements, and by i.r., u.v.–vis. and e.p.r. spectroscopy. A distorted octahedral environment was proposed for the vanadium(IV) and oxovanadium(IV) complexes. The spectroscopic results were utilized to compute the important ligand field parameters. Three adduct complexes were isolated owing to the interaction of one oxovanadium complex with Lewis-bases in MeOH. Vanadium(IV) complexes exhibit promising catalytic activity towards the aerobic oxidation of p-phenylenediamine (PPD) to the corresponding semi-oxidized form (PPD⁺). A linear correlation exists between the oxidase catalytic activity and the Lewis acidity of the central vanadium(IV) ion created by the donating properties of the parent ligand.     

A practical synthesis of fully protected l-γ-carboxyglutamic acid

We have developed a new synthetic route for the preparation of Fmoc protected l-γ-carboxyglutamic acid in 60% overall yield (>99% ee) via a six-step synthesis from d-Garner’s aldehyde. An aldol condensation and the selective cleavage of the acetonide protective group are key steps.