DFT study of the IR and Raman spectra of a fluorescent dendron built from cyclotriphosphazene core

Combined experimental and theoretical studies on molecular structure of the zero generation dendron, built from the hexafunctional cyclotriphosphazene core, with five OC₆H₄(CH₂)₂NHSO₂C₁₀H₆N(CH₃)₂ terminal groups and one oxybenzaldehyde group G₀ are reported. The Fourier transform Raman and IR spectra of G₀ have been recorded. Conformations of low energy isomers of G₀ have been studied at quantum-chemical level. The optimized geometry has been calculated by density functional (DFT) method at the PBE/TZ2P level of theory. The theoretical geometrical parameters, harmonic vibrational frequencies, IR intensities and Raman scattering activities are predicted in a good agreement with the experimental data. It was found that dendron molecule G₀ has a concave lens structure with planar OC₆H₄CHO fragments and slightly non-planar cyclotriphosphazene core. Relying on DFT calculations the bands of the core and terminal groups were assigned. The frequencies of ν(NH) bands in the IR spectrum reveal the presence of the H-bonds in the dendron.     

Synthesis, IR-, NMR-, DFT and X-ray study of ferrocenyl heterocycles from thiosemicarbazones. Part 21: Study on ferrocenes

Cyclization reactions of the thiosemicarbazones of formyl- and acetylferrocene and their S-methyl derivatives with DMAD afforded novel ferrocenyl-hydrazono-substituted thiazolones, one-one dimethylthiazole-4,5-dicarboxylate and 1,3-thiazin-4-one, N-ferrocenylimino-pyrimidones/imidazolones, one intermediate β-adduct and via oxidative cyclization, a ferrocenyl-1,2,4-triazole. Ring isomerization of 1,3-thiazin-4-ones to a 1,3-thiazolones was detected. The structure of the new compounds was established by IR and NMR spectroscopy, including HMQC, HMBC and DEPT measurements and supported with GIAO NMR calculations and controlled also synthetically by phase-transfer methylation. For three compounds the stereostructure was also proved by X-ray diffraction.     

DFT study and IR spectra of hexaphenoxycyclotriphosphazene generation phosphorus dendrimer

The infrared (150–3500 cm⁻¹) spectra have been recorded for hexaphenoxycyclotriphosphazene [NP(OPh)₂]₃ and all-D isotope specie. These compounds include a cyclotriphosphazene core and terminal phenoxy groups of elementoorganic dendrimers. The structural optimization and normal mode analysis are performed for elementoorganic dendrimer on the basis of the ab initio density functional theory. It is found that the dendrimer exists in a single stable conformation with slightly non-planar cyclotriphosphazene core. Relying on DFT calculations a complete vibrational assignment is proposed for different parts of the studied dendrimers. The softness of sulphur atom in the thiophosphoryl core to nucleophilic attack is higher than the softness of the atoms of the cyclotriphosphazene core. The reactivity of the core is less than that of terminal groups.     

DFT and experimental study on the IR spectra and structure of 2-hydroxy-3-methoxybenzaldehyde (o-vanillin) and its oxyanion

The structure of o-vanillin molecule and its oxyanion have been studied by density functional theory (DFT), employing the B3LYP functional and 6-311++G** basis set. All conformational isomers of o-vanillin and of its anion have been located and their relative energies have been determined. The IR spectral changes, caused by the conversion of the molecule into the corresponding oxyanion have been studied. In a general agreement between theory and experiment, the conversion causes a frequency decrease of the carbonyl stretching band ν(CO) and essential intensity increases of the aromatic skeletal bands as well as methyl stretching band ν(CH₃). According to the NBO electric charge analysis, the oxyanionic center bears 60% of the whole anionic net charge.     

INS,IR, RAMAN, 1H NMR and DFT investigations on dynamical properties of l-asparagine

Results of inelastic neutron scattering (INS), infra-red (IR), Raman and ¹H NMR spectroscopy used for investigations on the l-asparagine dynamics are reported. The crystallographic structure and experimental vibrational spectra are compared with those calculated by the DFT methods applied to the solid state. Very good conformity of the experimental and theoretical structures has been found. The NH₃⁺ torsional vibration mode is observed in the INS spectra at 494 cm⁻¹, while the bands assigned to the vibrations of the strong NH⋯O hydrogen bonds are observed at 2849, 2650, and 2480 cm⁻¹ in the IR spectrum. A ¹H NMR investigation has been carried out at 26.75 MHz in the temperature range 150–300 K. For l-asparagine the activation energy needed for the NH₃⁺ group reorientation is equal 5.6 kcal/mol.     

Combined study of vibrational spectra of α-carboline by theoretical and experimental IR methods

This paper reports the application of a scaled ab initio density-functional theory (DFT) at B3LYP/ccpvtz level to calculate the vibrational spectrum of α-carboline (9H-pyrido[2,3-b]indole), αCB, as well as the comparison of theoretical results with the experimental spectra. They have been recorded in Cl₃CD solution and in solid KBr pellets in the 4000-700 cm⁻¹ range. To test the adequacy of the computational method to reproduce the experimental vibrational spectra of αCB, this computational method has also been applied to the related and simpler molecules indole, Ind, and α-azaindole, αAInd. Previously reported assignments for the last compounds have been taken as reference for the subsequent assignments of the αCB vibrational bands. The results show that the hydrogen bonding interactions mainly affect the high frequency region while the skeletal vibration region keeps rather unchanged with the physical state of the sample. Moreover, apart from the vibrations involving the whole carboline nucleus, most of the experimental bands retain their original Ind and/or αAInd frequencies, thus allowing an easy assignment of the computed modes to the αCB vibrational bands.     

Vibrational spectra and structures of urazole and 4-methylurazole: DFT calculations of the normal modes in aqueous solution and in the solid state,and the influence of hydrogen bonding

Solid-state IR and Raman as well as aqueous solution state Raman spectra are reported for urazole, 4-methylurazole and their deuterated derivatives. DFT calculations, at the B3-LYP/cc-pVTZ level, established that the structures and vibrational spectra of the molecules can be interpreted using models with hydrogen-bonded water molecules, in conjunction with the polarizable continuum solvation method. The vibrational spectra were computed at the optimised molecular geometry in each case, enabling normal coordinate analysis, which yielded satisfactory agreement with the experimental IR and Raman data. Computed potential energy distributions of the normal modes provided detailed vibrational assignments. Solid-state pseudopotential-plane-wave DFT calculations, using the PW91 functional were also carried out, reflecting the importance of intermolecular hydrogen bonding in the solid state.     

Comprehensive SPHYB and B3LYP‐DFT Studies of Two Types of Ferrocene

Structural and optoelectronic properties of ferrocene (FeC₁₀H₁₀) using various exchange correlation potentials including Spin Polarized Generalized Gradient Approximation (SPGGA), Hybrid Density Functional Theory (SPHYB‐DFT), and hybrid density functional Becke3LYP are investigated. Obtained bandgap by the SPHYB‐DFT and SPGGA methods show consistency with the experiment, that are indirect and direct, respectively. The cell size effects on physical properties of ferrocene studied about two types of its lattice parameters ( I and II ). The calculated results reveal that the cell size and the lattice parameters have a remarkable effect on optoelectronic and magnetic properties of ferrocene. However, there is no significant difference between I and II within molecular, structural and charge transitions in calculating UV/Vis spectrum. The calculated electronic absorption spectrum is in good agreement with experiment, in which two major electron‐transition bands derived from d–d (n → n*) and n → π* metal to ligand. NBO analyses show that there are strong donor‐acceptor interactions between central Fe atoms and cyclopentadienyl (Cp) rings that these results are in close agreement with contour plots of charge densities for prediction of the strong covalent bond between C and Fe. The optoelectronic properties of ferrocene predict that it can be efficiently used in the semiconductor devices.     

Simulation of IR and Raman spectra of p-hydroxyanisole and p-nitroanisole based on scaled DFT force fields and their vibrational assignments

This work deals with the vibrational spectroscopy of p-hydroxyanisole (PHA) and p-nitroanisole (PNA) by means of quantum chemical calculations. The mid and far FT-IR and FT-Raman spectra were recorded in the condensed state. The fundamental vibrational frequencies and intensity of vibrational bands were evaluated using density functional theory (DFT) with the standard B3LYP/6-31G* method and basis set combination and were scaled using various scale factors which yield a good agreement between observed and calculated frequencies. The vibrational spectra were interpreted with the aid of normal coordinate analysis based on scaled density functional force field. The results of the calculations were applied to simulate infrared and Raman spectra of the title compounds, which showed excellent agreement with the observed spectra.     

First principles study of the structure,electronic state,and stability of CmN2 clusters

Geometric and electronic properties of C_mN₂ (m = 1–14) clusters have been investigated by density functional theory using the hybrid B3LYP functional and the 6‐311G(d) basis set. Harmonic frequencies for these clusters are given to aid in the characterization of the ground states. These results show that C_mN₂ (m = 1–14) clusters form linear structures with D_∞h symmetry. Two N atoms favor to bond at ends in linear isomers. The chains with odd m have triplet ground states whereas the ones with even m have singlet ground states. The calculated HOMO–LUMO gaps and ionization potentials all show that the C_mN₂ (m = 1–14) clusters with even m are more stable than those with odd m, which is consistent with the observed even–odd alternation of the time‐of‐flight signal intensities. © 2003 Wiley Periodicals, Inc. Int J Quantum Chem, 2004     

FT-IR, FT-Raman spectra, density functional computations of the vibrational spectra and molecular geometry of biomolecule 5-aminouracil

FT-IR and FT-Raman spectra of the biomolecule 5-aminouracil were recorded in the regions 400–4000 cm⁻¹ and 10–3500 cm⁻¹, respectively. The observed vibrational wavenumbers were analyzed and assigned to different normal modes of vibration of the molecule. Density functional calculations were performed to support wavenumber assignments of the observed bands. A comparison with the molecule of uracil was made, and specific scale factors were employed in the predicted wavenumbers of 5-aminouracil. With the purpose of study the important molecule 5-aminouracil, its equilibrium geometry and harmonic wavenumbers were calculated for the first time by the B3LYP DFT method. The vibrational wavenumbers were compared with IR and Raman experimental data. Also good reproduction of the experimental wavenumbers is obtained and the % error is very small. All the tautomeric forms of 5-aminouracil were determined and optimized. The dimer forms were also simulated. The energy, atomic charges and dipole moments were discussed and several general conclusions were underlined.     

Synthesis, NMR, IR spectroscopic and X-ray study of novel [pyridazin-3(2H)-one-6-yl]ferrocenes and related ferrocenophane derivatives. Study on ferrocenes. Part 14

On treatment with glyoxylic acid and hydrazine hydrate, 1,1′-diacetylferrocene was converted into the separable mixture of 1,1′-bis [pyridazin-3(2H)-one-6-yl]ferrocene and the hydrazone as well as the azine of 1-acetyl-1′-[pyridazin-3(2H)-one-6-yl]ferrocene. Successful cyclizations of 1,1′-bis[pyridazin-3(2H)-one-6-yl]ferrocene resulting in a series of novel ferrocenophanes containing heterocyclic units were performed under phase transfer- and homogeneous catalytic (RCM) conditions by the application of versatile dialkylating agents and second generation Grubbs’ catalyst, respectively. The structures were determined by mass spectrometry, IR, ¹H and ¹³C NMR spectroscopy including 2D-COSY, HMQC and HMBC measurements. The solid phase structure of a dimer product with π-stacking interaction was revealed by X-ray analysis.     

Synthesis, ring transformations, IR-, NMR and DFT study of heterocycles with two ferrocenyl units

Cyclization of 1,5-bis(ferrocenylmethylidene)thiocarbonohydrazide with DMAD afforded diastereomeric dimethyl-thiazole-4,5-dicarboxylates. The cis-isomer undergoes ring opening and recyclization to a thiazolone derivative. A further thiazolone was obtained from this precursor with ethyl chloroacetate employing a bifunctional organocatalyst. Due to its propensity to dehydrogenation evidenced by DFT calculations, the studied thiocarbonohydrazide underwent oxidative cyclizations under different conditions to yield a 1,3,4-thiadiazole and a 1,2,4-triazole derivative, respectively. Thermal isomerisation of 1,3,4-thiadiazole into 1,2,4-triazole was also observed. The DMAD-mediated cyclizations of the S-metylated thiocarbonohydrazide and the 1,5-bis(ferrocenylmethylideneamino)guanidine gave 1,2,4-triazole derivatives and a 4-pyrimidone, respectively. The structure of the new compounds was established by IR and NMR spectroscopy, including HMQC, HMBC and DEPT measurements. The solid state structure of a triazole was revealed by single crystal X-ray analysis.     

DFT study on mechanism of the classical Biginelli reaction

The condensation of benzaldehyde, urea, and ethyl acetoacetate according to the procedure described by Biginelli was investigated at the B3LYP/6-31G（d）, B3LYP/6-31 ＋G（d,p）, and B3LYP/6-311＋G（3df,2p）//B3LYP/6-31＋G（d,p） levels to explore the reaction mechanism. According to the mechanism proposed by Kappe, structures of five intermediates were optimized and four transition states were found. The calculation results proved that the mechanism proposed by Kappe is right.     

DFT study on cooperativity in the interactions of hydrazoic acid clusters

Density functional theory at the B3LYP level with the 6‐311G** basis set is performed to calculate the systems consisting of up to four hydrazoic acid molecules. The dimers are found to exhibit cyclic and chain structures with N … H contacts at ca. 2.1–2.7 Å. However, there are only cyclic structures with N … H contacts at ca. 2.0–2.3 Å and 2.0–2.1 Å in the trimer and tetramer, respectively. Hydrogen bond distances in the trimer and tetramer are shorter than those in the cyclic dimer as a result of the stronger interaction between molecules. The contribution of cooperative effect to the interaction energy is significant. After the correction of the basis set superposition error and zero‐point energy, the binding energies are ?10.69, ?29.34, and ?54.26 kJ·mol^?1 for the most stable dimer, trimer, and tetramer, respectively. The calculated IR shifts for N? H stretching mode increase with the size of the cluster growths, reaching more than 200 cm^?1 in the tetramer. For the most stable clusters, the transition from the monomer to dimer, dimer to trimer, and trimer to tetramer involve changes of ?14.40, ?25.68, and ?31.88 kJ·mol^?1 for the enthalpies at 298.15 K and 1atm, respectively. We also perform Mulliken populations analysis and find the Mulliken populations on intermolecular N … H increasing in the sequence of the dimer, trimer, and tetramer. © 2003 Wiley Periodicals, Inc. Int J Quantum Chem 94: 279–286, 2003     

Ferrocenyl pyrazolines: Preparation, structure, redox properties and DFT study on regioselective ring-closure

Cyclocondensation of 1-phenyl-3-ferrocenyl-2-propen-1-one (1) with RNHNH2 hydrazines and the substituent-dependent product distribution were investigated. With methylhydrazine, formation of two regioisomeric pairs of pyrazolines and pyrazoles was observed. The ratio of the products varied with the solvent and temperature. Transformation of 5-ferrocenyl-N-substituted pyrazolines into pyrazoles was systematically studied and DDQ was found to be the most suitable reagent. Mechanism of the cyclization reactions taking place under kinetic- and thermodynamic controls was supported with DFT calculations. The energy-dependence of the transformation of pyrazoline to pyrazole was investigated also by EI MS. Structure determination of the new compounds was performed by IR, MS and NMR methods including 2D-HMQC, 2D-HMBC, DEPT and DIFFNOE measurements. For two compounds structures were also proved by X-ray diffraction.     

芳基重氮盐及其18-冠醚-6络合物的低频红外光谱

本文合成了九种不同取代基的苯基四氟硼酸重氮盐及其与18-冠醚-6形成的分子络合物, 考察它们的低频红外光谱, 讨论这类络合物的成键状况。     

Effect of molecular and crystal structure ofN-naphthylurethanes (carbamates) on their IR spectra

A comparative analysis of the IR spectra in the region of 3000–400 cm⁻¹ of four urethanes (methyl-(N-(1-naphthyl) carbamate, ethyl-N-(1-naphthyl) carbamate, dimethyl-N,N′-(1,5-naphthylene) dicarbamate, and diethyl-N,N′-(1,5-naphthylene) dicarbamate) with known molecular and crystal structures was carried out. The assignment of the bands related to the vibrations of the urethane and naphthyl fragments was refined on the basis of the study of the crystalline samples, melts, solutions, and deuterated analogs. The effect of the degree of conjugation of the urethane group with the naphthalene ring on the Amide II vibration frequency in the crystals was shown. It was suggested that the stretching vibrations of the C(Ar)−N bond in naphthylurethanes (unlike aliphatic derivatives) make a considerable contribution to the Amide II vibration, while the planar deformation vibration of the N−H bond was proved to be more significant for Amide III than for Amide II. In addition, strong nonspecific intermolecular interactions in the crystal can weaken valent bonds. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 2, pp. 300–303, February, 1998.     

DFT+U Analysis on Stability of Low-Index Facets in Hexagonal LaCoO3 Perovskite:Effect of Co3+ Spin States

By the first-principles calculations,most studies indicated that the (11102)-CoO₂ termination of LaCoO₃ cannot be stabilized,which disagrees with the experimental observation.Besides the crystal structure,we found that the spin states of Co³⁺ ions could affect surface stability,which previously were not well considered.By examining the different states of Co³⁺ ions in hexagonal-phase LaCoO₃,including low spin,intermediate spin,and high spin states,the surface grand potentials of these facets are calculated and compared.The results show that the spin states of Co³⁺ ions have an important influence on stability of the LaCoO₃ facets.Different from the previous results,the stability diagrams demonstrate that the (11102)-CoO₂ termination can stably exist under O-rich condition,which can get an agreement with the experimental ones.Furthermore,the surface oxygen vacancy formation energies (E_Ov) of stable facets are computed in different spin states.The E_Ov of these possible exposed terminations strongly depend on the spin state of Co³⁺ ions:in particular,the E_Ov of the HS states is lower than that of other spin states.This indicates that one can tune the properties of LaCoO₃ by directly tuning the spin states of Co³⁺ ions.     

Structural characterization of silver dialkylphosphite salts using solid‐state 109Ag and 31P NMR spectroscopy,IR spectroscopy and DFT calculations

High‐resolution solid‐state ¹⁰⁹Ag and ³¹P NMR spectroscopy was used to investigate a series of silver dialkylphosphite salts, Ag(O)P(OR)₂ (R = CH₃, C₂H₅, C₄H₉ and C₈H₁₇), and determine whether they adopt keto, enol or dimer structures in the solid state. The silver chemical shift, CS, tensors and |J(¹⁰⁹Ag, ³¹P)| values for these salts were determined using ¹⁰⁹Ag (Ξ = 4.652%) NMR spectroscopy. The magnitudes of J(¹⁰⁹Ag, ³¹P) range from 1250 ± 10 to 1318 ± 10 Hz and are the largest reported so far. These values indicate that phosphorus is directly bonded to silver for all these salts and thus exclude the enol structure. All ³¹P NMR spectra exhibit splittings due to indirect spin–spin coupling to ¹⁰⁷Ag (I = 1/2, NA = 51.8%) and ¹⁰⁹Ag (I = 1/2, NA = 48.2%). The ¹J(¹⁰⁹Ag, ³¹P) values measured by both ¹⁰⁹Ag and ³¹P NMR spectroscopy agree within experimental error. Analysis of ³¹P NMR spectra of stationary samples for these salts allowed the determination of the phosphorus CS tensors. The absence of characteristic P?O stretching absorption bands near 1250 cm^?1 in the IR spectra for these salts exclude the simple keto tautomer. Thus, the combination of solid‐state NMR and IR results indicate that these silver dialkylphosphite salts probably have a dimer structure. Values of silver and phosphorus CS tensors as well as ¹J(¹⁰⁹Ag, ³¹P) values for a dimer model calculated using the density functional theory (DFT) method are in agreement with the experimental observations. Copyright © 2010 John Wiley & Sons, Ltd.