A General Equation Holds for the Geometry of Hydrogen Bonds with O and N Acceptors

A unique equation able to correlate two geometrical parameters in hydrogen-bonded (HB) systems, the X—H covalent bond distance of the donor and the HY distance of the acceptor, has been devised. The equation is able to fit high-quality crystallographic data of different HB donors and several nitrogen and oxygen acceptors.     

Theoretical studies on the conformations of selenamides

Ab initio HF/6-31+G*, MP2/6-31+G*, B3LYP/6-31+G* level calculations have been performed on HSe-NH₂ to estimate the Se-N rotational barriers and N-inversion barriers. Two conformers have been found withsyn andanti arrangement of the NH₂ hydrogens with respect to Se-H bond. The N inversion barriers in selenamide are 1.65, 2.47, 1.93 kcal/mol and the Se-N rotational barriers are 6.58, 6.56 and 6.12 kcal/mol respectively at HF/6-31+G*, MP2/6-31+G* and B3LYP/6-31+G* levels respectively. The n_N →Σ *_Se-H negative hyperconjugation is found to be responsible for the higher rotational barriers.     

Shape-Selective Alkylation of Isopropylnaphthalene over HM Zeolite. A Theoretical Study

A first principle quantum chemical method for determining the shape of molecules has been elaborated and its value in interpreting the experimentally found shape selectivity in isopropylation of isopropylnaphthalene on H-mordenite zeolite is demonstrated. In line with experimental results, it is found that 2,6-diisopropylnaphthalene is the most feasible product since it diffuses through the main channels of mordenite the easiest among the possible isomers.     

Structure and isomerization of heterapentalene compounds containing hypervalent bonds with central nitrogen,phosphorus, or arsenic atom

The possibility for a specific type of isomerization (electromorphism) to occur in conjugated bicyclic organic compounds containing Group V elements was studied by the ab initio (RHF/6-31G**, MP2(full)/6-31G**), and DFT (B3LYP/6-31G**) methods. Compounds 2 (X = N, P, As) were found to exist in a monocyclic planar form with intramolecular donor-acceptor N...O coordination (X = N) and as aromatic heterapentalene structures with hypervalent O--X--O bonds (X = P, As). According to calculations, no isomerization of planar heteroaromatic structures into pyramidal ones occurs. The strength of the O--X--O hypervalent bond and the aromaticity of heterapentalene structures 2 with ten -electrons increase on going from X = N to X = P. Correct estimation of these effects requires the inclusion of electron correlation.     

Theoretical studies on the structure and spectroscopic properties of pseudohalides

Pseudohalogen-containing compounds have attracted significant interest among nonmetal chemists and theorists, not only owing to their potential use in various fields but also due to difficulties in their experimental preparation and characterization. Since its introduction in 1925, the pseudohalide principle has been used extensively and, therefore, a remarkable progress has been made in the experimental and theoretical research on the compounds of this kind. In this work, we review studies on structural investigations and theoretical characterizations of several pseudohalide-containing compounds in order to contribute to better understanding of the chemistry of many such species.     

“Spectroscopic” Calculation of CH and NH Bond Dissociation Energies for a Series of Primary Amines

The CH and NH bond dissociation energies were calculated by the spectroscopic method for a series of primary amines. The energies were calculated from the fundamental absorption bands in an anharmonic approximation using the Morse harmonic basis set. The results are compared with data obtained from ab initio calculations in different basis sets and experimental values. It is shown that, unlike quantum-chemical calculations, the spectroscopic method correctly reproduces the effect of the molecular structure on the CH and NH bond dissociation energies in amines.Original Russian Text Copyright © 2004 by L. A. Gribov, I. A. Novakov, A. I. Pavlyuchko, V. V. Korolkov, and B. S. Orlinson__________Translated from Zhurnal Strukturnoi Khimii, Vol. 45, No. 6, pp. 999–1007, November–December, 2004.     

Molecular Conformation of 2,2'-Dinitrodiphenylamine According to Dielectric Studies and Ab Initio Quantum Chemical Calculations

According to the results of ab initio calculations employing the HF/6-31G* approach, the isolated 2,2'-dinitrodiphenylamine molecule exists as an sc, sc conformer stabilized by a symmetric intramolecular bifurcated (three-center) hydrogen bond. In protophilic solvents (1,4-dioxane), the conformational equilibrium is also shifted in the direction of this rotational isomer.     

On the Relative Importance of O–H/π Interactions in 7-Norbornenols

The geometries of the two H–O–C rotamers of synand two of anti-7-norbornenol have been optimized at the ab initio HF/6-31G** and B3LYP hybrid HF-DFT levels of theory by using a 6-31G** basis set. Contrary to an earlier report, we find that the (nongeometry constrained) anti-trans isomer (1d) is predicted to be more stable than the corresponding syn-cis form (1a). The increased stability of 1d vis-à-vis 1a can be accounted for in terms of relative H(1)–C(2)–O(3)–H(4) torsion energy effects. The computational results indicate that the hydroxyl proton in 1a enters into intramolecular hydrogen bonding with the proximate C=C bond. Supporting evidence for this conclusion resides in the fact that the 1a is predicted to possess the lowest O–H stretching frequency, a result that can be attributed to -hydrogen bonding.     

IR Spectra of Paracetamol and Phenacetin. 1. Theoretical and Experimental Studies

IR spectra of paracetamol and phenacetin have been measured for powder crystals of these compounds and for their solutions in chloroform and dimethylsulfoxide. Ab initio calculations of their equilibrium geometry and vibrational spectra were carried out for spectrum interpretation. Differences between the experimental IR spectra of solutions and crystalline samples have been analyzed. Variations of molecular structure from the isolated state to molecular crystal were estimated based on the difference between the optimized molecular parameters of free molecules and the experimental bond lengths and angles evaluated for the crystal forms of the title compounds. The role of hydrogen bonds in the structure of molecular crystals of paracetamol and phenacetin is investigated, and spectral ranges with maximal intermolecular interactions are determined.     

Understanding Regium Bonds and their Competition with Hydrogen Bonds in Au2:HX Complexes

A theoretical study of the regium and hydrogen bonds (RB and HB, respectively) in Au₂:HX complexes has been carried out by means of CCSD(T) calculations. The theoretical study shows as overall outcome that in all cases the complexes exhibiting RB are more stable that those with HB. The binding energies for RB complexes range between −24 and −180 kJ ⋅ mol^−1, whereas those of the HB complexes are between −6 and −19 kJ ⋅ mol⁻¹. DFT-SAPT also indicated that HB complexes are governed by electrostatics, but RB complexes present larger contribution of the induction term to the total attractive forces. ¹⁹⁷Au chemical shifts have been calculated using the relativistic ZORA Hamiltonian.     

Antisymmetry and stability of aqueous systems. IV. Small clusters of arbitrary form

The antisymmetry of small water clusters of various configurations with three to five molecules, which are stable according to the ab initio calculated data, was analyzed. The antisymmetry operation was alteration of the direction of all hydrogen bonds including the direction of the external unrealized H-bonds. It was found that most configurations of small clusters were antisymmetric. Other configurations form pairs of antipode configurations with very close energies.     

Theoretical study of the intermolecular hydrogen bond interaction for furan-HCl and furan-CHCl<Subscript>3</Subscript> complexes

The nature of the intermolecular hydrogen bond for the furan-HCl and furan-CHCI₃ complexes has been studied using ab initio calculations with MP2 level of theory. The new hydrogen bond type of C(CI)-H...O and π interactions are studied also. It is shown that, for the optimized geometries of furan-CHCI₃, C-H bond lengths contract and vibrational frequencies are blue-shifted, while for the furan-HCl complex, H-CI bond lengths elongate and vibrational frequencies are red-shifted. In addition, the NBO analysis indicates that, for the furan-CHCI₃ complex, the charge transfers from the lone pair of the proton acceptor to both σ *(CH) antibonding MO and lone pairs of CI atom.     

Ab initio calculations of methionines and their protonated forms

Ab initio calculations of molecular and electronic structures of neutral molecules and protonated forms of methionine and its derivatives in the gaseous phase were carried out by the Hartree-Fock method using the 6–31G^* basis set with full geometry optimization. Proton affinities of methionine (1), methionine sulfoxide (2), and methionine sulfone (3) were calculated for different modes of coordination of the proton. The results of calculations demonstrated that in protonated forms of 1 and 3, bonding between the proton and the N atom is most favorable, while in protonated form of 2, bonding between the proton and the O atom of the SO group is most favorable. The proton affinities of the amino acids are as follows: 223.2 (1), 241.2 (2), and 221.5 (3) kcal mol⁻¹,i.e., methionine sulfoxide 2 exhibits the highest proton affinity in the series of the amino acids under consideration. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 8, pp. 1487–1490, August, 1998.     

The Equilibrium CC Bond Length

Twenty eight CC bonds lengths (from a sample of 23 molecules) whose experimental equilibrium structures are thought to be reliable are calculated ab initio. Two different correlated methods are compared: MP2 and CCSD(T). The convergence of Dunning's correlation consistent polarized valence basis sets, cc-pVnZ is also studied. With the CCSD(T)/cc-pVQZ method, a systematic correction of about 0.0034 Å is necessary when the frozen core approximation is used. With this offset of 0.0034 Å taken into account, the accuracy (standard deviation) is 0.0013 Å. With the cc-pVTZ basis set, the correction increases to 0.0066 Å and the accuracy drops to 0.0018 Å. The MP2 method is significantly less accurate and the offset only remains constant for similar bonds. During this work, new structures are calculated for methyl cyanide, oxirane, cyclopropenylidene, allene, and cyclopropene.     

Theoretical investigation on regioselectivity of aromatic ketones in the addition with olefin catalyzed by RuH2(CO)(PPh3)3

Ab initio method is employed to study the structures of twelve aromatic ketones at HF/3-21G, HF/6-31G and HF/6-31G* levels, respectively. A theoretical analysis is also carried out to study the regioselectivity and reactivity of aromatic ketones in the addition with olefin catalyzed by RuH₂(CO)(PPh₃)₃. The results indicate that a U shape LUMO conjugation of aromatic ketones in a plane plays an important role in regioselectivity on the cleavage of β C-H bond and is a necessary factor to success of addition with olefin, and that steric effect is an indispensable factor in forming additional ortho-product. Meanwhile, electronic effect may influence the rate of addition for the structures alike which only have different replacements in the same site of aromatic ring, such as furan, thiophene and pyrole. A possible catalytic reaction mechanism is proposed that the addition of C-H bond may be carried out by a coordination of aromatic ketones with Ru complex.     

苯乙烯/马来酸酐共聚物的氢键诱导液晶化——单氢键方式的SLCP复合物的合成和表征

合成了侧链含苯甲酸的苯乙烯／马来酸单酯共聚物（ＭＥ－ＳＭＡ）和４－苯乙烯基吡啶（４ＳＺ）。以ＴＨＦ为溶剂，制备了以ＭＥ－ＳＭＡ为质子给体，４ＳＺ为质子受体的氢键复合物。用ＤＳＣ和偏光显微镜（ＰＯＭ）研究两者复合前后的液晶行为。结果表明形成的氢键复合物在２０３℃～３３４℃呈现向列相液晶态，并用ＩＲ证实了分子间氢键的存在。     

Chelate complex Ni(S2C2H2)2 as a molecular model of the hydrodesulfurization active center

Electronic states of Ni atom in a square-planar complex Ni(S₂C₂H₂)₂ and its molecular adduct with H₂S were studied by means ofab initio molecular orbital calculations. H₂S adsorption stabilizes the Ni(IV) state (d⁶) in the complex with the Ni atom shifted from the plane by 0.35 ?.     

三接触弯曲构型的蓝移氢键CH3…Y的理论研究

运用量子化学从头算方法, 在MP2/6-311＋＋G(d,p), MP2/6-311＋＋G(2df,2p), MP2/6-311＋＋G(3df,3pd)和QCISD/6-311＋＋G(d,p)水平上, 研究了CH₃F, CH₃Cl和CH₃Br作为质子给体与Cl^－, Br^－作为质子接受体形成的氢键CH₃…Y. 计算结果表明: 6种复合物中C—H键收缩, 伸缩振动频率增大, 形成蓝移氢键. 分子中原子(Atoms in Molecules, AIM)分析表明, 这些复合物的电子密度拓扑性质与普通氢键有着本质的不同, 在Y…H之间不存在键临界点, 而在Y与C之间存在键临界点, 因此这些相互作用严格地不能称为氢键. 自然键轨道(Natural bond orbital, NBO)分析表明, 在这些复合物中弯曲的CH…Y的特殊结构使得分子间超共轭n(Y)®σ*(C—H)减小到可以忽略; 质子接受体的电子密度没有转移到σ*(C—H)上, 而是转移到了σ*(C—X) (X＝F, Cl, Br)上; 存在一定程度的重杂化; 分子内超共轭相互作用减小使得σ*(C—H)的电子密度减少. 这些因素共同导致C—H伸缩振动频率的蓝移.     

Synthesis and Properties of New 2-[2-(N-alkyl)-pyridinium]-4,4,5,5-tetramethylimidazoline-1-oxyl-3-oxide Iodide Radicals

2-(2-pyridyl)-4,4,5,5-tetramethylimidazoline-1-oxyl-3-oxide radical 2 and the 2-[2-(N-alkyl)-pyrid-inium] derivatives (3a and 3b) were synthesized and characterized by elemental analysis, melting points, and spectroscopy. The density functional theory (DFT) was used in order to obtain the structures and electronic properties of the new nitronyl nitroxide radicals. Modified reaction procedures of the intermediates are described with better yield and purity of the final products. The magnetic properties of the compounds 2, 3a, and 3b are predicted for the first time using a simple model of charge transference, in the framework of the molecular orbital calculations. The obtained results show that the substituent at the central carbon atom of the imidazoline is important to determine the spin distribution and consequently the nature of the magnetic interaction.