IOPY/ISPY类HIV-1逆转录酶抑制剂的定量构效关系研究

C-5修饰的3-碘-4-芳氧基/芳硫基吡啶酮(IOPY/ISPY)类化合物是一类潜在的HIV-1非核苷类逆转录酶抑制剂, 特别是这类化合物因具有同时抑制野生型和突变型病毒株的特性, 而受到更加广泛的关注. 首先利用两套2D通用描述符同时构建了该类化合物的线性和非线性定量构效关系模型. 结果表明这些模型都具有较好的预测能力, 并且非线性模型较线性模型预测能力更好些. 为了更好、更形象地描述逆转录酶抑制剂的特征, 进一步结合三维定量构效关系(3D-QSAR)模型, 以及SAReport分析对该类化合物同时抑制野生型和突变型病毒株的结构特征进行了分析, 发现在对这类化合物进行结构修饰时, 需要服从如下三条理论指导原则: (1) R基团中的正负电场分布情况对化合物的活性起着关键作用|(2) R基团最好具有芳香环或芳香杂环和(3) R基团的环结构上连接的取代基不宜太多.     

HEPT类逆转录酶抑制剂的三维定量构效关系

利用比较分子力场分析(CoMFA)方法对32个HEPT类HIV-1逆转录酶抑制剂(RTIs)的三维定量构效关系(3D-QSAR)进行了分析,建立了HIV-1逆转录酶抑制剂的3种3D-QSAR模型,发现影响其生物活性的主要因素为立体场因素,这与HIV-1RT的非底物结合部位(NNBS)的疏水性环境相吻合.进一步分析表明,适当长度的1-位侧链对保持化合物的抗病毒活性致关重要;增大5-位取代基的体积可增强生物活性;在1-位苄氧甲基的对位引入大体积基团有利于提高活性.同时考察立体场、静电场与生物活性的关系,表明,CoMFA模型为最佳预测模型,其交叉验证系数R_CV²=0.870,传统相关系数R²=0.986,标准偏差SE=0.146,F=294.546.用此模型预测了检验组3个HEPT类化合物的-lgEC₅₀,R_pred²=0.850,表明模型具有很好的预测能力,可为HEPT类HIV-1逆转录酶抑制剂的结构优化提供理论指导.     

二芳基三嗪类HIV-1逆转录酶抑制剂的分子对接及3D-QSAR研究

对40个二芳基三嗪类HIV-1逆转录酶抑制剂进行了分子对接研究,结果表明,2个疏水性芳香取代基团与结合口袋底部形成的疏水和范德华相互作用、三嗪环母核及其R4取代基与结合位点产生的氢键和静电作用以及R4取代基与袋口形成的空间位阻效应是影响该系列化合物活性的重要因素.根据对接优势构象进行分子叠合和比较分子相似性指数分析(C...     

Nonnucleoside HIV-1 Reverse Transcriptase Inhibitors, Part 4[1]. Synthesis and Anti-HIV Activity of N-1-β-Carbonyl-6-naphthyl-methyl Analogues of HEPT

Summary.  A series of 6-naphthylmethyl substituted HEPT analogues bearing a β-carbonyl and a terminal phenyl ring or ester groups on the N-1 side chain of uracil were synthesized, and the in vitro anti-HIV activity was evaluated. Most of these HEPTs were considerably less potent and selective or inactive, only a few compounds showed moderate or high activity against HIV-1. The results demonstrated that the anti-HIV-1 activity of 6-naphthylmethyl substituted HEPT analogues was diminished or eliminated when the β-oxygen of N-1 side chain was replaced by a carbonyl group.     

Phthalimide and Naphthalimide end‐Capped Diketopyrrolopyrrole for Organic Photovoltaic Applications

Two small molecules named PI‐DPP and NI‐DPP with a DPP core as the central strong acceptor unit and phthalimide/naphthalimide as the terminal weak acceptor were designed and synthesized. The effects of terminal phthalimide/naphthalimide units on the thermal behavior, optical and electrochemical properties, as well as the photovoltaic performance of these two materials were systematically studied. Cyclic voltammetry revealed that the lowest unoccupied molecular orbitals (LUMO) (~ ‐3.6 eV) of both molecules were intermediate to common electron donor (P3HT) and acceptor (PCBM). This indicated that PI‐DPP and NI‐DPP may uniquely serve as electron donor when blended with PCBM, and as electron acceptor when blended with P3HT, where sufficient driving forces between DPPs and PCBM, as well as between P3HT and DPPs should be created for exciton dissociation. Using as electron donor materials, PI‐DPP and NI‐DPP devices exhibited low power conversion efficiencies (PCEs) of 0.90% and 0.76% by blending with PCBM, respectively. And a preliminary evaluation of the potential of the NI‐DPP as electron acceptor material was carried out using P3HT as a donor material, and P3HT: NI‐DPP device showed a PCE of 0.6%, with an open circuit voltage (V _OC) of 0.7 V, a short circuit current density (J _SC) of 1.91 mA•cm^‐2, and a fill factor (FF) of 45%.     

分子动力学模拟别构抑制剂Efavirenz对HIV-1逆转录酶的作用

为了理解非核苷类逆转录酶抑制剂(NNRTIs)与HIV-1逆转录酶(RT)的相互作用机制,利用新力场ff12SB对未结合和结合Efavirenz (EFV)逆转录酶的三种RT大分子体系分别进行了100 ns的长时间动力学模拟。通过分析EFV对RT结构的影响、不同残基柔性和不同体系构象的动力学行为等,发现EFV的结合会导致RT结构变化,从而影响RT的活性;证实了EFV的“分子楔”作用;还发现EFV的结合不但引起“拇指关节炎”,而且引起轻度“手指关节炎”;整个模拟过程中没有出现不同构象间的跃迁,但是无别构分子时的RT张开构象表现出明显的闭合倾向。这些结果有助于理解NNRTIs的抑制机制和RT构象变化的动力学性质。另外,还比较分析了模拟方法对计算结果的影响,对大分子体系的动力学模拟具有重要借鉴意义。     

苯并噁嗪酮衍生物对HIV-1逆转录酶抑制活性的QSAR研究极化连续介质模型(PCM)法的应用

采用极化连续介质模型(PCM)法, 计算了19个苯并噁嗪酮衍生物的量子化学参数. 在此基础上, 结合传统理化参数, 建立了相关系数较高(r=0.976)、 标准偏差较小(s=0.111)的回归方程; 采用留一法获得交叉验证的相关系数平方(Q²)为0.914. 对所得到的模型进行了合理的解释, 研究结果对设计更有效的苯并噁嗪酮类抗人类免疫缺陷病毒(HIV)药物具有一定的指导意义.     

Synthesis,Structure Elucidation and H+/K+‐ATPase Inhibitory Activity of Bisabolangelone Reduction Derivatives

Nine bisabolangelone reduction derivatives were synthesized and separated as potential anti‐ulcer agent. Their structures were characterized by 2D NMR, IR, ESI‐MS, elemental analysis and single‐crystal X‐ray diffraction analysis. Preliminarily H⁺/K⁺‐ATPase activity evaluation indicated that all the target compounds had a certain inhibitory effect, and compounds II and IV exhibited the better inhibitory activity against H⁺/K⁺‐ATPase than bisabolangelone and the commercial omeprazole with the IC₅₀ of 23.21 and 65.32 μmol/L, respectively. The initial structure‐activity analysis suggested that the presence of carbonyl group in six‐membered ring and double bond in side‐chain seemed to be necessary to the activity.     

Synthesis and ABTS Radical,MMP‐1 Inhibitory Activity of CAPE Analogues

In the photoaging process of skin, the ultraviolet (UV)‐induced reactive oxygen species (ROS) is the key regulator of matrix metalloproteinase (MMPs) expression. In this study, a series of Caffeic acid phenethyl ester (CAPE) analogues were synthesized by conjugating the group VI elements (selenium, sulfur, oxygen)‐containing aliphatic alcohols to polyphenolic acids. Their biological activities were evaluated by in vitro testing of their radical scavenging activity the of ABTS [2,2′‐azinobis‐(3‐ethyl‐benzothiazoline‐6‐sulfonic acid)] radical and inhibitory effect against the matrix metalloproteinase‐1 (MMP‐1) activity of collagen degradation and cytotoxicity of a human dermal fibroblast skin cell. Our results suggest these compounds displayed moderate anti‐free radical, potent MMP‐1 inhibitory, and low cytotoxic activities.     

Synthesis of Some Novel 1,4‐Phenylene‐bis‐thiazolyl Derivatives and Their Anti‐hypertensive α‐blocking Activity Screening

A series of novel 1,4‐phenylene‐bis‐thiazolyl derivatives were synthesized and evaluated for their anti‐hypertensive activities as α‐blocking agents and some of them showed promising activities.