Solid-phase methylamidation for sialoglycomics by MALDI-MS

Matrix-assisted laser desorption/ionization mass spectrometry (MALDI-MS) has been a major approach for glycan analysis. However, the preferential cleavage of the sialic acid moiety by in- and post-source decay influences the determination of sialylated glycans by MALDI-MS. Many chemical derivatization methods were introduced to stabilize the sialylated glycan during MALDI-MS. Among current derivatization methods, methylamidation is a promising means for simultaneous analysis of natural sialylated glycans regardless of their sialic acid linkage types. Here, a novel derivatization method was developed, in which proteins were conjugated on the solid-phase support in order to stabilize the sialic acids by methylamidation and to reduce sample loss and contamination during the derivatization process. This derivatization strategy was used to investigate N-glycans from fetuin, a glycoprotein containing different types of complex N-glycans. The developed method was also applied to the N-glycan profiling of human serum from patients and healthy volunteers. Results were consistent with N-glycan profiling by HPLC-fluorescence detection. This new method provided a sensitive, simple, and robust approach for profiling glycan structures of complex samples.     

Spin-trapped Radicals: Determination by LC-TSP-MS and LC-ESI-MS

The 4-POBN[α-(4-pyridyl-l-oxide)-N-tert-butyl-nitrone] radical adducts of ethyl and pentyl radicals were determined by a combination of high performance liquid chromatography (HPLC) combined with electron paramagnetic resonance (EPR) with HPLC-electrospray (ESI)-mass spectrometry and HPLC-thermospray (TSP)-MS. The identifIcation of the peak corresponding to the spin-trapped radical was done by performing HPLC-EPR under the same chromatographic conditions as the HPLC-MS. The radical adducts could be determined by both techniques, even though for ESI only 12 μL/min of the total 1 mL/min HPLC flow rate could be directed into the ion source.     

Interaction of ozone with variable-valence metal ions in concentrated silicate solutions

Spectrophotometric studies have revealed that ozone oxidizes Cr(III) into Cr(VI), Fe(III) into Fe(VI), Mn(VI) into Mn(VII), and Np(VI) into Np(VII) in the concentrated aqueous silicate solutions. Cr(III) oxidation is accelerated in alkaline-silicate and alkaline solutions as compared to neutral silicate solution. Ferrate and permanganate ions are unstable in Na₂SiO₃ solutions (0.5–1.3 mol/L of the silicate). Neptunium(VII) ions formed in the course of ozonation are stable in Na₂SiO₃ solution (1 mol/L) upon drying in air to form solid vitreous mass.     

Synthesis and preparation of nanoparticles composed of amphiphilic poly(γ-glutamic acid) with different hydrophobic side chains and their potential of membrane disruptive activity

In the development of nanoparticle-based vaccine adjuvants, the interaction between nanoparticles (NPs) and the cells is a key factor. To control them, we focused on the relationship between the hydrophobicity of the side chains and the cell membrane. In this study, amphiphilic poly(γ-glutamic acid) (γ-PGA), using various types of hydrophobic side chains, was synthesized and used to prepare NPs for evaluating the membrane disruptive activity. When leucine ethyl ester (Leu), methionine ethyl ester (Met), or tryptophan ethyl ester (Trp) was grafted, each polymer formed monodispersed NPs at physiological conditions. Significantly, NPs composed of Leu and Trp showed a membrane disruptive activity at the endosomal environment (pH 5–6.5), while NPs composed of Met did not show. This might be due to the weak hydrophobicity of Met compared to that of Leu and Trp, which demonstrated that the interaction between NPs and cells could be controlled by designing the polymer compositions.     

Photocatalytic activity of nitrogen-modified TiO2/SiO2

The physicochemical characteristics of nitrogen-modified TiO₂/SiO₂ and its photocatalytic activity in the oxidation of methyl orange (MO) were studied. Nitrogen-modified TiO₂/SiO₂ had higher activity than the unmodified samples. The photocatalytic oxidation of MO obeys the Langmuir-Hinshelwood model.     

A colorimetric assay for d-Penicillamine in urine and plasma samples based on the aggregation of gold nanoparticles

We report herein the development of a highly sensitive colorimetric method for detection of d-Penicillamine using citrate-capped gold nanoparticles (AuNPs). This assay relies upon the distance-dependent of gold nanoparticles surface plasmon resonance band of gold nanoparticles. By replacing the thiol-containing chelator drug, d-Penicillamine, with citrate on the gold nanoparticles surface, a new peak appearing at a longer wavelength intensifies and shifts further to the red from the original peak position due to aggregation of gold nanoparticles which depends on ionic strength, gold nanoparticles and d-Penicillamine concentration. During this process, the plasmon band at 521 nm decreases gradually along with the formation of a new red-shifted band at 630 nm. The calibration curve which is derived from the ratio intensities of absorbance at longer wavelength (630 nm) to original wavelength (521 nm) displays a linear relation in the range of 5.0 × 10^?6–3.0 × 10^?4 M d-Penicillamine. Lower limit of detection for d-Penicillamine, at the signal-to-noise ratio of 3 (3σ), was 3.8 × 10^?6 M. The developed methodology was successfully applied for the determination of d-Penicillamine in human urine and plasma.     

Multiresidue Determination of Ten Nonsteroidal Anti-inflammatory Drugs in Bovine,Porcine, and Chicken Liver Tissues by HPLC-MS/MS

Nonsteroidal anti-inflammatory drugs (NSAIDs) are the group of drugs having the therapeutic efficacy of analgesic and antipyretic. To detect health-threatening residues of NSAIDs, a fast and easy multiresidue method based on liquid chromatography tandem mass spectrometry (LC-MS/MS) was described. Ten NSAIDs were extracted from the tissues using 2 mL of acetonitrile and 0.1 mL of 2 mM ammonium formate in distilled water. After clean-up using C18 sorbent, it was evaporated under nitrogen, reconstituted with 1 mL distilled water and analyzed by LC-MS/MS. The method was validated based on guideline for residue testing laboratory. Furthermore, the method has also been applied successfully to detect ten NSAIDs from bovine, porcine, and chicken liver tissues. In a total of 315 liver samples tested, acetylic salicylic acid was detected from 28 porcine and 2 chicken liver tissues at levels of 13?～?576 and 50?～?53 ng/g, respectively. Subsequently, paracetamol was detected in 15 porcine liver tissues with a detection levels of 28?～?381 ng/g. Phenylbutazone and its metabolite, oxyphenylbutazone, were detected at 247 and 15 ng/g range in one of the bovine liver tissue, respectively.     

Effect of intermediate coupling in angular distribution of Auger electrons

A general expression for angular distribution of Auger electrons in the intermediate coupling scheme is obtained. It is shown that the intermediate coupling can lead to an anisotropy of the Auger line which is isotropic in the pure LS-coupling     

The Prognostic Value of Histidine-Rich Glycoprotein RNA in Breast Tissue Using Unmodified Gold Nanoparticles Assay

The aim of is this study is to explore the role of tissue histidine-rich glycoprotein (HRG) RNA as a promising clinically useful biomarker for breast cancer patients prognosis using nanogold assay. Expression of the HRG RNA was assessed by gold nanoparticles and conventional RT-PCR after purification by magnetic nanoparticles in breast tissue samples. The study included 120 patients, 60 of which were histologically proven breast carcinoma cases, 30 had benign breast lesions and 30 were healthy individuals who had undergone reductive plastic surgery. ER, PR and HER2 status were also investigated. The prognostic significance of tissue HRG RNA expression in breast cancer was explored. The magnetic nanoparticles coated with specific thiol modified oligonucleotide probe were used successfully in purification of HRG RNA from breast tissue total RNAs with satisfactory yield. The developed HRG AuNPs assay had a sensitivity and a specificity of 90 %, and a detection limit of 1.5 nmol/l. The concordance rate between the HRG AuNPs assay with RT-PCR after RNA purification using magnetic nanoparticles was 93.3 %. The median follow-up period was 60 months. Among traditional prognostic biomarkers, HRG was a significant independent prognostic marker in relapse-free survival (RFS). HRG RNA is an independent prognostic marker for breast cancer and can be detected using gold NPs assay, which is rapid, sensitive, specific, inexpensive to extend the value for breast cancer prognosis.     

Ultrasensitive detection and identification of BRAF V600 mutations in fresh frozen,FFPE, and plasma samples of melanoma patients by E-ice-COLD-PCR

A number of molecular diagnostic methods have been developed for the detection and identification of mutations in tumor samples, which are important for the choice of treatment in the context of personalized medicine. For the treatment of metastatic melanoma, Vemurafenib is recommended for patients with BRAF V600 activating mutations. However, the different assays developed to date for the detection of these mutations lack sensitivity or specificity or do not allow a sequencing-based identification or validation of the mutation. Recently, enhanced improved and complete enrichment co-amplification at lower denaturation temperature-polymerase chain reaction (E-ice-COLD-PCR) has been developed as a sensitive method for the detection and identification of mutations in KRAS codons 12/13. Here, we present the first E-ice-COLD-PCR assay for the detection and identification of BRAF codon 600 mutations, which has a large dynamic range, as 25 pg to 25 ng can be used as DNA input without any reduction in mutation enrichment efficiency, and which can detect down to 0.01 % of mutated alleles in a wild-type background. The assay has been validated on fresh frozen, formalin-fixed paraffin-embedded (FFPE), and plasma samples of melanoma patients and has allowed the detection and identification of BRAF mutations present in samples appearing as wild type using standard pyrosequencing, endpoint genotyping, or Sanger sequencing. Thus, the BRAF V600 E-ice-COLD-PCR assay is currently one of the most powerful molecular diagnostic tools for the ultrasensitive detection and identification of BRAF codon 600 mutations.     

Efficient Production of Native Lunasin with Correct N-terminal Processing by Using the pH-Induced Self-Cleavable Ssp DnaB Mini-intein System in Escherichia coli

To develop an efficient and cost-effective approach for the production of small preventive peptide lunasin with correct natural N terminus, a synthetic gene was designed by OPTIMIZER & Gene Designer and cloned into pTWIN1 vector at SapI and PstI sites. Thus, lunasin was N-terminally fused to the pH-induced self-cleavable Ssp DnaB mini-intein linked to a chitin binding domain (CBD) with no extra residues. The resultant fusion protein was highly expressed by lactose induction in Escherichia coli BL21 (DE3) in a 7-l bioreactor and bound to a chitin affinity column. After washing the impurities, the Ssp DnaB intein mediated on-column self-cleavage was easily triggered by shifting pH and temperature to allow the native lunasin released. The final purified lunasin yielded up to 75 mg/l medium. Tricine/SDS-PAGE and matrix-assisted laser desorption time-of-flight (MALDI-TOF)/mass spectrometry (MS) verified the structural authenticity of the product, implying the correct cleavage at the junction between Ssp DnaB intein and lunasin. MTT assay confirmed its potent proliferation inhibitory activity to human cancer cells HCT-116 and MDA-MB-231; however, no cytotoxicity to normal human lens epithelial cell SRA01/04 and hepatoma HepG2. Taken together, we provide a novel strategy to produce recombinant native lunasin with correct N-terminal processing by using the pH-induced self-cleavable Ssp DnaB mini-intein.     

Development of ssDNA Aptamers for the Sensitive Detection of Salmonella typhimurium and Salmonella enteritidis

Salmonella enterica subsp. enterica ser. enteritidis and Salmonella enterica subsp. enterica ser. typhimurium are the most common and severe food-borne pathogens responsible for causing salmonellosis in humans and animals. The development of an early and ultra-sensitive detection system is the first critical step in controlling this disease. To accomplish this, we used the cell systematic evolution of ligands by exponential enrichment (Cell-SELEX) technique to identify single-stranded DNA (ssDNA) aptamers to be used as detection probes that can specifically bind to S. enteritidis and S. typhimurium. A total of 12 target-specific ssDNA aptamers were obtained through ten rounds of Cell-SELEX under stringent selection conditions, and negative selection further enhanced the selectivity among these aptamers. Aptamer specificity was investigated using the gram-negative bacteria E. coli and P. aeruginosa and was found to be much higher towards S. enteritidis and S. typhimurium. Importantly, three candidate aptamers demonstrated higher binding affinities and the dissociation constants (Kd) were found to be in the range of nanomolar to submicromolar levels. Furthermore, individual aptamers were conjugated onto polyvalent directed aptamer polymer, which led to 100-fold increase in binding affinity compared to the individual aptamers alone. Taken together, this study reports the identification of higher affinity and specificity ssDNA aptamers (30mer), which may be useful as capture and detection probes in biosensor-based detection systems for salmonellosis.     

Preparation of Cu (II)/PEI–QPEI/SiO2 nanopowder as antibacterial material

The silica nanoparticles were prepared by the sol–gel process, and then twice modified and grafted by polyethylenimine (PEI) on their surface. After quaternary ammonium reaction and chelated copper reaction, the PEI/SiO₂, QPEI/SiO₂, PEI–QPEI/SiO₂ and Cu (II)/PEI–QPEI/SiO₂ nanopowders were obtained in turn. The morphology and structure of the products were characterized through SEM, EDX, HRTEM, FTIR and element analysis. At the same time, the antibacterial activity of the products to E. coli and Candida were evaluated through quantification and qualitative ways, e.g. microcalorimetric method and culture dish method. The results suggested that the Cu (II)/PEI–QPEI/SiO₂, a novel three-component functional nanopowder, presented the best antibacterial activity to both E. coli and Candida duo to the synergistic sterilization capability of the ammonium salt and copper ions, compared with other products. It indicated that the Cu (II)/PEI–QPEI/SiO₂ nanopowder could be a novel antibacterial nanomaterial to widely application in preventing and minimizing bacteria of the organism and environment in future.     

Multiplex genotyping of KRAS point mutations in tumor cell DNA by allele-specific real-time PCR on a centrifugal microfluidic disk segment

Point Mutations on the Kirsten rat sarcoma viral oncogene homolog (KRAS) have been identified as an important predictive biomarker for response to cancer therapy targeting the epidermal growth factor receptor. KRAS mutations are prevalent in up to 40 % of all colorectal carcinomas, and routinely conducted KRAS genotyping is becoming mandatory to predict therapy success and to reduce therapy costs. We report a low-cost, disposable and ready-to-use centrifugal microfluidic cartridge (termed GeneSlice) containing preloaded primers and probes. The GeneSlice cartridge enables the parallel detection of the seven most relevant KRAS point mutations by allele-specific real-time PCR. It represents a cost effective alternative to dideoxy-sequencing with a faster time-to-result (~ 2 h versus up to 20 h in case of dd-sequencing). Microfluidic processing of the GeneSlice along with allele-specific amplification and real-time detection are conducted in a slightly modified, commercially available PCR thermocycler. Intra-chip standard deviation of C_q values on the GeneSlices is negligible (GeneSlice 1: C_q,std.dev. = 0.13; GeneSlice 2: C_q,std.dev?=?0.26). In 23 of 24 experiments, the data for genotyping 6 cancer cell lines (n?=?4 per cell line) agreed with dd-sequencing. Additionally, DNA derived from microdissected formalin-fixed and paraffin embedded colorectal carcinomas of two cases was genotyped correctly and reproducibly (n?=?3 per patient; one GeneSlice excluded from evaluation). The GeneSlice therefore clearly demonstrated the potential to become a valuable tool for routine diagnostics of KRAS mutations by reducing costs and hands-on time. Figure

Photograph of a centrifugal microfluidic cartridge “GeneSlice” for multiplex genotyping of KRAS point mutations from tumor cell DNA by allele-specific real-time PCR. Information about the mutation status is required to predict success of state-of-the-art cancer therapy with antibodies     

Preparation of platinum(II) sulfide complexes immobilized on silica

We report on preparation of silica-immobilized platinum(II) complexes of the [{SiO₂}O₂Si(CH₃)· (CH₂)₃SR]₂PtCl₂ type (R = Bu, Hex, or Bn; {SiO₂} = silica surface).     

Chlorine K shell photoabsorption spectra of gas phase HCl and Cl2 molecules

High resolution photoabsorption spectra of HCl and Cl₂ have been measured near the chlorineK edge in the 2810–2850 eV photon energy range. Below the ClK edge, the strongest resonance is interpreted as a simple core excitation into the unoccupied σ* valence orbital for both molecules, leading to a markedly repulsive state. Higher resonances due to low lying Rydberg states, are observed in both systems, but with a larger oscillator strength for HCl as compared to Cl₂. In Cl₂, the σ* orbital is deep enough to avoid any mixing with Rydberg orbitals. In HCl, we observe the dipole forbidden Cl 1s → 4s transition which denotes a strong 4s–4p hybridization. Above the ClK edge, the multiplet features seen for HCl are analysed in terms of double-core-valence excited vacancy states. In Cl₂, their counterpart are found very close to the ionization threshold because of the deep σ* orbital and possibly because the excited core and valence electrons originates either from the same atomic site or from different ones.     

Separation of metallic impurities from uranium by anion exchange on Dowex 1×8 resin

The separation of metallic impurities from uranium by anion exchange with a Dowex 1×8 resin has been investigated. The following elements can be quantitatively separated from 400 mg uranium using a 1 cm diameter 15 or 30 cm long column. The elements Ag, Al, Ba, Ca, Cr, Cs, K, Mg, Mn, Na, Ni, Rb, REE, Sc, Th, Ti and Y can be separated by eluting the elements with conc. HCl. Uranium is retained by the resin. Al, Ca, Cd, Co, Cr, Cu, Fe, Mg, Mn, Na, REE and V can be separated by eluting with 0.01 N H₂SO₄. Uranium is retained by the resin. Cd and Zn can be separated by first eluting uranium with 0.5 N HCl and then eluting Cd and Zn with 1 N NH₃. Hf, Zr and V can be separated by eluting with 5 N HCl but some uranium contamination is unavoidable.     

Carbon black nanoparticles with a high reversible capacity synthesized by liquid phase plasma process

Carbon blacks synthesized by the liquid phase plasma process in benzene with and without distilled water showed a very high charging capacity of about 1,540–1,600 mAh/g depending on the liquid involved. CBs synthesized from organic benzene only were found to have a higher specific surface area compared to CBs from benzene with water, contributing to the higher charging capacity of 1,600 mAh/g. The charge–discharge cyclic stability (measured from 2 to 20 cycles) of the CBs synthesized from benzene was significantly improved with the addition of water from 58 % to about 70 % reversible capacity. Our results suggest a promising method of producing carbon black nanoparticles at low temperatures with a reasonable performance applicable for lithium ion batteries.     

Biosynthesis and Characterization of Pd and Pt Nanoparticles Using Piper betle L. Plant in a Photoreduction Method

An extremely rapid green approach that generates bulk quantities of nanocrystals of noble metals such as palladium (Pd) and platinum (Pt) nanoparticles (NPs) with a small sizes of 3.8 ± 0.2 and 2.1 ± 0.4 nm by using Piper betle L. (Piperaceae) leaf extract is described. The highly stable and monodispersed Pd and Pt NPs were obtained at 10 min of continuous sunlight exposure. The bio-reduced Pd and Pt NPs were further characterized by using UV–Visible spectroscopy, transmission electron microscopy, selected area electron diffraction, X-ray diffraction, X-ray photoelectron spectroscopy, Fourier transform infrared spectroscopy, thermogravimetric analysis and cyclic voltammetry measurements. The particles, although discrete, were predominately associated with the P. betle plant proteins, which makes them stable over long time periods. These synthesized biogenic Pd and Pt NPs were evaluated for their acute toxicity studies against aquatic organism, Daphnia magna.