Effects of disulfide linkages on gas-phase reactions of small multiply charged peptide ions

Multiply protonated ions of disulfide-intact and -reduced peptides were generated by electrospray ionization and studied by Fourier transform ion cyclotron resonance mass spectrometry. The effects of disulfide bonds on gas-phase deprotonation reactions and hydrogen/deuterium (H/D) exchange were investigated. Insight into conformations was gained from molecular dynamics calculations. For ions from three small peptides containing 9–14 amino acid residues, H/D exchange is more sensitive to changes in conformation than deprotonation. However, with both gas-phase reactions the more diffuse forms of the peptides (as determined by molecular modeling) react more readily. The effects of disulfide cleavage on the conformations and on the reactions were found to depend upon the sequence of the peptide. For [M + 3H]³⁺ of TGF-α (34–43), reduction of the disulfide linkage leads to a greatly extended structure and a dramatic increase in the rate and extent of H/D exchange. In contrast, [M + 2H]²⁺ of Arg⁸ -vasopressin becomes slightly more compact upon cleavage of the disulfide bond; these reduced ions are slower to react. For [M + 3H]³⁺ of somatostatin-14, reduction of the disulfide bond has little effect on conformation or gas-phase reactivity. Overall, these results indicate that there is no general rule on how cleavage of a disulfide bond will effect a peptide ion’s gas-phase reactivity.     

Evidence for many resolvable structures within conformation types of electrosprayed ubiquitin ions

A new two-dimensional ion mobility spectrometry approach combined with mass spectrometry has been used to examine ubiquitin ions in the gas phase. In this approach ions are separated in an initial drift tube into conformation types (defined by their collision cross sections) and then a gate is used to introduce a narrow distribution of mobility-separated ions into a second drift tube for subsequent separation. The results show that upon selection a narrow peak shape is retained through the second drift tube. This requires that at 300 K the selected distribution does not interconvert substantially within the broader range of structures associated with the conformation type within the approximately 10-20 ms time scale of these experiments. For the [M + 7H]7+ ion, it appears that many ( approximately 5-10) narrow selections can be made across each of the compact, partially-folded, and elongated conformer types, defined previously (Int. J. Mass Spectrom. 1999, 187, 37-47).     

Use of multiply charged atomic ions for isotope ratio mass spectrometry

We have investigated the use of multiply charged atomic ions for the measurement of isotopic ratios of gaseous and vapour samples. We use a mass spectrometer system incorporating an electron cyclotron resonance (ECR) ion source for this purpose. In the cases of carbon, nitrogen and oxygen, the selection of the 2+ atomic species is found to be the most effective for obtaining reliable isotopic ratios. Using samples of carbon dioxide, nitrogen, air and water vapour, we have demonstrated the determination of the isotopic ratios 13C/12C, 15N/14N, 17 O/16 O and 18 O/16 O. For oxygen, this technique offers an alternative to the equilibration or purification methods normally required to obtain isotopic ratios of water or other oxygen-containing samples. In particular, 17 O/16 O can be measured directly without isobaric interference from OH+. With typical ionization efficiencies of greater than 10%, ECR ion sources have the potential to enable measurements on very small samples. In addition to those evaluated in the present work, there is scope for application of this method to other sample types, to a variety of sampling methods, and to other elements.     

Wavelength-dependent Coulomb explosion in carbon disulphide (CS2) clusters: generation of energetic multiply charged carbon and sulphur ions

A gigawatt laser-induced Coulomb explosion has been observed in carbon disulphide (CS(2)) clusters generating energetic, multiply charged [C](m+) (m = 1-4) and [S](n+) (n = 1-6) atomic ions of carbon and sulphur. The Coulomb explosion shows wavelength dependence. Comparison of these results with our earlier work shows that the polarizability and dipole moment might help in energy absorption from the laser field but they are not mandatory conditions for this low-intensity Coulomb explosion. The results show that in a field of 10(9) W/cm(2), absorption of 266 and 355 nm laser radiation by CS(2) clusters leads to multiphoton dissociation/ionization whereas at 532 nm the whole cluster explodes generating multiply charged atomic ions.     

Adsorption of proteins onto charged surfaces: A Monte Carlo approach with explicit ions

A computer model has been developed to simulate the adsorption of proteins onto charged surfaces displaying an electric double layer. Coadsorption of ions onto the surface is included by means of explicit ions. Only electrostatic interactions are considered. Monte Carlo simulations in the canonical ensemble of the enzyme cutinase and 15 variants (modeled from the X-ray tertiary structure of the wild-type) were performed. Adsorption free energies for all variants were calculated by the thermodynamic integration method. Distributions of the electric moment and the vector pointing toward the protein active site and parallel to its central β-sheet were determined to elucidate the mean orientation of the protein with respect to the surface as a function of its distance from the surface. It was found that the free energy of adsorption varied linearly with the total charge of the protein, while the electric moment (dipole moment) had a second-order but significant effect. Though an increase of the electric moment generally resulted in a slightly increased affinity of the protein for the surface, close to the surface the mean force acting on the protein clearly varied linearly with the strength of the electric moment, such that a clear correlation between the latter and the protein orientation with respect to the surface could be established. Wild-type cutinase displayed the highest affinity for the charged surface amongst all proteins having the same total charge, even though it did not have the largest electric moment. © 1996 by John Wiley & Sons, Inc.     

Electron capture dissociation of gaseous multiply charged ions by Fourier-transform ion cyclotron resonance

Fourier-transform ion cyclotron resonance instrumentation is uniquely applicable to an unusual new ion chemistry, electron capture dissociation (ECD). This causes nonergodic dissociation of far larger molecules (42 kDa) than previously observed (<1 kDa), with the resulting unimolecular ion chemistry also unique because it involves radical site reactions for similarly larger ions. ECD is highly complementary to the well known energetic methods for multiply charged ion dissociation, providing much more extensive protein sequence information, including the direct identification of N- versus C-terminal fragment ions. Because ECD only excites the molecule near the cleavage site, accompanying rearrangements are minimized. Counterintuitively, cleavage of backbone covalent bonds of protein ions is favored over that of noncovalent bonds; larger (>10 kDa) ions give far more extensive ECD if they are first thermally activated. This high specificity for covalent bond cleavage also makes ECD promising for studying the secondary and tertiary structure of gaseous protein ions caused by noncovalent bonding.     

Detection of fragment ions produced by collisional activation of multiply charged ions in a floated collision cell

A scan law is derived for the detection of fragment ions formed by collisional activation (CA) of a multiply charged precursor in a floated collision cell of a tandem mass spectrometer. Comparisons of the CA spectra of multiply charged ions obtained in either a floated or a grounded collision cell demonstrate the benefits associated with raising the collision cell above ground potential. In addition to the advantages observed for singly charged ions, floating the collision cell increases the transmission of multiply charged ions through the first mass spectrometer by permitting higher source potentials to be used. This technique also increases the detection efficiency for products of charge separation reactions, which may prove useful in the charge state assignment of the fragment ions.     

Automated assignment of charge states from resolved isotopic peaks for multiply charged ions

The recent proliferation of electrospray as an ionization method has greatly increased the ability to perform analyses of large biomolecules by using mass spectrometry. The major advantage of electrospray is the ability to produce multiply charged ions, which brings large molecules down to a mass-to-charge ratio range amenable to most instruments. Multiple charging is also a disadvantage because mass (m) becomes ambiguous unless charge (z) can be assigned. This is typically performed with simple algorithms that use multiple peaks of the same m and different z, but these methods are difficult to apply to complex mixtures and not applicable when only one z appears for each m. The use of mass analyzers with higher resolving powers, like the Fourier transform mass spectrometer, allows resolution of isotopic peaks, providing an internal 1-Da mass scale that can be used for unambiguous charge assignment. Manual assignment of charge state from the isotopic peaks is time consuming and becomes inaccurate when either the signal level or resolving power are low. For these cases, computer algorithms based on pattern recognition techniques have been developed to assist in assignment of charge states to isotopic clusters. These routines provide for more rapid analysis with higher accuracy than available manually.     

Counter-ion perturbation of the fragmentation pathways of multiply charged anions: evidence for exit channel complexes on the fragmentation potential energy surfaces

We report the first low-energy collisional excitation measurements and density functional theory calculations to characterize the ground state potential energy surfaces of contact ion-pair complexes that contain multiply charged anions (MCAs). Excitation of K+.Pt(CN)(4) (2-) and K+.Pt(CN)(6) (2-) result in fragmentation products associated with decay of the isolated constituent dianions, revealing that the ground state ion-pair surfaces are dominated by the intrinsic characteristics of the MCA. This observation is important since it indicates that counter-ion complexation only weakly perturbs the electronic structure of an MCA. For K+.Pt(CN)(4) (2-), where the Pt(CN)(4) (2-) dianion decays with production of two ionic fragments, we observe evidence for the existence of a novel exit-channel complex corresponding to a polar KCN salt unit bound to the Pt(CN)(3) (-) anion. The results described provide a basis for understanding the potential energy surfaces and fragmentation characteristics of other ion-pair complexes that involve MCAs.     

Apparent gas-phase acidities of multiply protonated peptide ions: Ubiquitin,insulin B,and renin substrate

The gas-phase deprotonation reactions of multiply protonated bovine ubiquitin, insulin chain B, and renin substrate tetradecapeptide ions have been studied in a Fourier transform ion cyclotron resonance mass spectrometer coupled with an external electrospray source. Rate constants were measured for the reactions of these peptide ions with a series of reference compounds of known gas-phase basicities ranging from 195.6 to 232.6 kcal/mol. The apparent gas-phase acidities (GA_app) of the multiply protonated peptide ions [M + nH]ⁿ⁺ were determined with deprotonation reactions. The deduced values of GA_app show a strong dependence on the charge states of the multiply protonated peptide ions. In general, the values decrease as the charge states of the peptide ions increase. For ubiquitin ions, the determined GA_apps values decrease from> 232.6 to 205.0 kcal/mol for n = 4-13; for insulin B ions, the GA_apps decrease from> 232.6 to 198.2 kcal/mol for n = 2-5; for renin substrate ions, the GA_apps decrease from 221.6 to < 195.6 kcal/mol for n = 2-4. Interestingly, at a given mass-to-charge ratio, the GA_apps of these peptide ions agree within 10 kcal/mol despite large differences in their mass and charge. The ubiquitin and insulin B ions generated under the present conditions reveal multiple isomers at certain charge states,n = 4, 5, 6, 12 for ubiquitin and n = 4, 5 for insulin B, as evidenced by the fact that the isomers display distinctively different deprotonation reaction rates with certain reference compounds.     

Generation of multiply charged peptides and proteins by radio frequency acoustic desorption and ionization for mass spectrometric detection

The design and implementation of a radio frequency acoustic desorption ionization (RADIO) source has been demonstrated for the analysis of multiply charged peptides and proteins. One μL aliquots of melittin, BNP-32, and ubiquitin (∼1 μg of analyte) were deposited onto a quartz crystal microbalance (QCM) electrode before radio frequency actuation for desorption. Continuous electrospray parallel to/above the sampling surface enabled the ionization of desorbed species. Detection by a hybrid linear ion trap Fourier transform ion cyclotron resonance mass spectrometer confirmed the intact and dissociated species observed during MS and MS/MS experiments, respectively.     

On the formation of doubly charged ions in field ionization

The observation of doubly charged ions in field ionization with blade or wire emitters does not in itself indicate that high excitation energies (≥ 17 eV) are accessible through gas phase ionization with such emitters.     

Collisional activation and collision-activated dissociation of large multiply charged polypeptides and proteins produced by electrospray ionization

Collisional activation (CA) and collision-activated dissociation (CAD) of multiply protonated molecular ions produced by electrospray ionization using an atmospheric pressure source are described. A TAGA 6000E triple-quadrupole mass spectrometer, in both unmodified and differentially pumped inlet arrangements, was used to investigate CA and CAD during transfer through the atmosphere-vacuum interface and subsequent CAD in the tandem instrument. Melittin, which has a molecular weight (M _r ) of 2846, is efficiently dissociated in the interface at higher nozzle-skimmer voltages, yielding fragmentation that can be assigned to the various charge states. Selection of such product ions formed in the interface for subsequent tandem mass spectrometry allows confirmation of earlier sequence assignments and extends the utility of these methods. Various charge states of larger polypeptides, such as human parathyroid hormone (1–44) (M _r 5064), can be efficiently collisionally dissociated in the second (rf-only) quadrupole. However, for molecular ions of this size, the low-energy collisions used for CAD yield only partial sequence information. For large molecules such as horse heart myoglobin (M _r 16,951), the effects of nozzle-skimmer bias are explored, and it is shown that higher charge states (at ≤ m/z 1400) can be effectively dissociated in the interface. Initial results for both metastable (unimolecular) and CAD for myoglobin are reported. The potential and limitations of CAD for large biomolecular ions are discussed. The feasibility of fingerprinting for proteins is illustrated by the CAD spectra of cytochrome c from nine species.     

Semi-empirical model for the fission of multiply charged metal clusters

A semi-empirical model is proposed to calculate the fission barrier height for large highly-charged simplemetal clusters. The fusion barrier is obtained making use of a bonding potential, and the classical metallic drop model is employed for calculating the heats of fission and evaporation. We have found a good agreement between calculated critical sizes and experimental results for the appearance of charged clusters in mass spectra. Within the same model, we predict the critical numbers for spontaneous fission.     

Ion-induced nucleation of dibutyl phthalate vapors on spherical and nonspherical singly and multiply charged polyethylene glycol ions

Dibutyl phthalate vapor nucleation induced by positive polyethylene glycol (PEG) ions with controlled sizes and charges was experimentally studied. The ions were produced by electrospray ionization, classified in a high-resolution differential mobility analyzer, and studied in a nano condensation nucleus counter of the mixing type. Ionic radii of PEG varied from 0.52 to 1.56 nm, including from singly to quadruply charged ions. Some of these ions are fully stretched chains, other are spherical, and others have intermediate forms, all of them having been previously characterized by mobility and mass spectrometry studies. Activation of PEG1080(+2) requires a supersaturation almost as high as that required for small singly charged ions and higher than for PEG1080(+). This anomaly is explained by the Coulombic stretching of the ion into a long chain, where the two charged centers appear to be relatively decoupled from each other. The critical supersaturation for singly charged spherical ions falls below Thomson's (capillary) theory and even below the already low values seen previously for tetraheptyl ammonium bromide clusters. Spherical PEG4120(+2) falls close to the Thomson curve. The trends observed for slightly nonspherical PEG4120(+3) and highly nonspherical (but not quite linear) PEG4120(+4) are intermediate between those of multiply charged spheres and small singly charged ions.     

Polyelectrolyte adsorption on charged surfaces: study by electrokinetic measurements

In order to describe the influence of cationic polyelectrolytes on flocculation of disperse systems the adsorption of poly (diallyldimethylammonium chloride) (PDADMAC) onto silica, mica and acidic polymer latex was investigated. The plateau value of the adsorption isotherms grows with increasing surface charge density of the substrates and electrolyte concentration. The adsorbed layer of the polycation was characterized by zeta potential measurements with KCl solutions of constant ionic strength and varied pH. The zero point of the charge as well as the shape of the zeta potential–pH plot depends on the coverage of the surface with polycations. For fully covered substrates the zero point of the charge as well as the pK_A and pK_B values calculated by a stochastic search programme are independent of the substrate. Maximum flocculation was observed at about 30% of the plateau value of the adsorption isotherms.     

Reactive landing of gas-phase ions as a tool for the fabrication of metal oxide surfaces for in situ phosphopeptide enrichment

Zirconium, titanium, and hafnium oxide-coated stainless steel surfaces are fabricated by reactive landing of gas-phase ions produced by electrospray ionization of group IVB metal alkoxides. The surfaces are used for in situ enrichment of phosphopeptides before analysis by matrix-assisted laser desorption ionization (MALDI) mass spectrometry. To evaluate this method we characterized ZrO₂ (zirconia) surfaces by (1) comparison with the other group IVB metal oxides of TiO₂ (titania) and HfO₂ (hafnia), (2) morphological characterization by SEM image analysis, and (3) dependence of phosphopeptide enrichment on the metal oxide layer thickness. Furthermore, we evaluated the necessity of the reactive landing process for the construction of useful metal oxide surfaces by preparing surfaces by electrospray deposition of Zr, Ti, and Hf alkoxides directly onto polished metal surfaces at atmospheric pressure. Although all three metal oxide surfaces evaluated were capable of phosphopeptide enrichment from complex peptide mixtures, zirconia performed better than hafnia or titania as a result of morphological characteristics illustrated by the SEM analysis. Metal oxide coatings that were fabricated by atmospheric pressure deposition were still capable of in situ phosphopeptide enrichment, although with inferior efficiency and surface durability. We show that zirconia surfaces prepared by reactive landing of gas-phase ions can be a useful tool for high throughput screening of novel phosphorylation sites and quantitation of phosphorylation kinetics.