The Influence of the Exchange-Correlation Functional on the Non-Interacting Kinetic Energy and Its Implications for Orbital-Free Density Functional ApproximationsSCI北大核心CSCD

In this work it is shown that the kinetic energy and the exchange-correlation energy are mutual dependent on each other.This aspect is first derived in an orbital-free context.It is shown that the total Fermi potential depends on the density only,the individual parts,the Pauli kinetic energy and the exchange-correlation energy,however,are orbital dependent and as such mutually influence each other.The numerical investigation is performed for the orbital-based non-interacting Kohn-Sham system in order to avoid additional effects due to further approximations of the kinetic energy.The numerical influence of the exchange-correlation functional on the non-interacting kinetic energy is shown to be of the orderof a few Hartrees.For chemical purposes,however,the energetic performance as a function of the nuclear coordinates is much more important than total energies.Therefore,the effect on the bond dissociation curve was studied exemplarily for the carbon monoxide.The data reveals that,the mutual influence between the exchange-correlation functional and the kinetic energy has a significant influence on bond dissociation energies and bond distances.Therefore,the effect of the exchange-correlation treatment must be considered in the design of orbital-free density functional approximations for the kinetic energy.     

Towards an order-N DFT method

One of the most important steps in a Kohn-Sham (KS) type density functional theory calculation is the construction of the matrix of the KS operator (the “Fock” matrix). It is desirable to develop an algorithm for this step that scales linearly with system size. We discuss attempts to achieve linear scaling for the calculation of the matrix elements of the exchange-correlation and Coulomb potentials within a particular implementation (the Amsterdam density functional, ADF, code) of the KS method. In the ADF scheme the matrix elements are completely determined by 3D numerical integration, the value of the potentials in each grid point being determined with the help of an auxiliary function representation of the electronic density. Nearly linear scaling for building the total Fock matrix is demonstrated for systems of intermediate size (in the order of 1000 atoms). For larger systems further development is desirable for the treatment of the Coulomb potential. Received: 30 March 1998 / Accepted: 6 July 1998 / Published online: 15 September 1998     

Linear scaling computation of the Fock matrix. VII. Periodic density functional theory at the Gamma point

Linear scaling quantum chemical methods for density functional theory are extended to the condensed phase at the Gamma point. For the two-electron Coulomb matrix, this is achieved with a tree-code algorithm for fast Coulomb summation [M. Challacombe and E. Schwegler, J. Chem. Phys. 106, 5526 (1997)], together with multipole representation of the crystal field [M. Challacombe, C. White, and M. Head-Gordon, J. Chem. Phys. 107, 10131 (1997)]. A periodic version of the hierarchical cubature algorithm [M. Challacombe, J. Chem. Phys. 113, 10037 (2000)], which builds a telescoping adaptive grid for numerical integration of the exchange-correlation matrix, is shown to be efficient when the problem is posed as integration over the unit cell. Commonalities between the Coulomb and exchange-correlation algorithms are discussed, with an emphasis on achieving linear scaling through the use of modern data structures. With these developments, convergence of the Gamma-point supercell approximation to the k-space integration limit is demonstrated for MgO and NaCl. Linear scaling construction of the Fockian and control of error is demonstrated for RBLYP6-21G* diamond up to 512 atoms.     

Grid-based energy density analysis: implementation and assessment

Grid-based energy density analysis (grid-EDA) that decomposes the total energy into atomic energies by a space-partitioning function is proposed. The kinetic energy, nuclear attraction, and exchange-correlation functional are evaluated on grid points and are split into atomic contributions. To reduce numerical errors in the conventional scheme of numerical integration, the electronic Coulomb and HF exchange interactions are evaluated by the pseudospectral method, which was first applied to an ab initio method by Friesner [Chem. Phys. Lett. 116, 39 (1985)], and are decomposed into atomic contributions. Grid-EDA using the pseudospectral method succeeds in ensuring less than 1 kcalmol error in total energies for small molecules and providing reliable atomic energy contributions for the problematic lithium cluster, which exhibits a strong basis-set dependence for Mulliken-type EDA. Also, site-dependent atomization energies are estimated by grid-EDA for cluster models such as Li(48), C(41)H(60), and Mg(32)O(32). Grid-EDA reveals that these models imitate crystal environments reasonably because atomization energies estimated from the inner atoms of the models are close to the experimental cohesive energies.     

Calculation of exchange-correlation potentials with auxiliary function densities

The use of Hermite Gaussian auxiliary function densities from the variational fitting of the Coulomb potential for the calculation of exchange-correlation potentials is discussed. The basic working equations for the energy and gradient calculation are derived. The accuracy of this approximation for optimized structure parameters and bond energies are analyzed. It is shown that the quality of the approximation can be systematically improved by enlarging the auxiliary function set. Average errors of 0.5 kcal/mol are obtained with auxiliary function sets including f and g functions. The timings for a series of alkenes demonstrate a substantial performance improvement.     

球胶体颗粒之间相互作用能的求解

根据线性迭加近似方法,定义了一个修正电位项,较详细地推导出用于中等电位条件下球形胶体颗粒相互作用能和力的公式,该公式较为简单、实用,然而,对其所做的改进主要是针对相互作用能而不是力,对其原因也作了简单的讨论.     

An analysis of two local measures of the electronic localization: a comparison with the ELF and the exchange-correlation density results

In this work we have explored the performance of two functions, recently proposed by Ayers [J. Chem. Sci., 2005, 117, 441], with the purpose of quantifying local electron localization. The first function, ζ(h), measures the total fluctuation per electron in the number of electrons at a given position r(1), while the second one, ζ(R), is a local representation of the minimum fluctuation criterion for electron localization. The study is carried out through a set of diatomic molecules that covers a wide range of covalent/polar character. Additionally, we have also calculated the electron localization function and the exchange-correlation hole along the internuclear axis. We have found that, for all the studied molecules, the numerical integration involved in computing ζ(h) did not converge. We think that this is so because the hole correlation calculations are not able to yield its correct asymptotic decaying behavior for large absolute values of the internuclear distances. On the other hand, the calculation of ζ(R) has proved to be feasible, and the information obtained from it has been concluded to be compatible to that rendered by the electron localization function (ELF) and the exchange-correlation density. Moreover, it has been also found that the results for ζ(R) allow to quantify the relative degree of electron localization within different molecular regions.     

An application of double exponential formula to radial quadrature grid in density functional calculation

We report an application of the double exponential formula to the numerical integration of the radial electron distribution function for atomic and diatomic molecular systems with a quadrature grid. Three types of mapping transformation in the double exponential formula are introduced into the radial quadrature scheme to generate new radial grids. The double exponential grids are examined for the electron-counting integrals of He, Ne, Ar, and Kr atoms which include occupied orbitals up to the 4p shell. The performance of radial grid is compared for the double exponential formula and the formulas proposed in earlier studies. We mainly focus our attention on the behavior of accuracy by the quadrature estimation for each radial grid with varying the mapping parameter and the number of grid points. The convergence behavior of the radial grids with high accuracy for atomic system are also examined for the electron-counting integrals of LiH, NaH, KH, Li₂, Na₂, K₂, HF, HCl, HBr, F₂, Cl₂, Br₂, LiF, NaCl, KBr, [ScH]⁺, [MnH]⁺, and [CuH]⁺ molecules. The results reveal that fast convergence of the integrated values to the exact value is achieved by applying the double exponential formula. It is demonstrated that the double exponential grids show similar or higher accuracies than the other grids particularly for the Kr atom, Br₂ molecule, alkali metal hydrides, alkali metal halogenides, and transition metal hydride cations, suggesting that the double exponential transformations have potential ability to improve the reliability and efficiency of the numerical integration for energy functionals.     

Numerical integration of atomic electron density with double exponential formula for density functional calculation

In the preceding study, we reported an application of the double exponential formula to the radial quadrature grid for numerical integration of the radial electron distribution function. Three-type new radial grids with the double exponential transformation were introduced. The performance of radial grids was compared between the double exponential grids and the grids proposed in earlier studies by applying to the electron-counting integrals of noble gas atoms and diatomic molecules including alkali metals, halogens, and transition metals. It was confirmed that the change in accuracy of the quadrature approximation depending on atomic or molecular species is not significant for the double exponential integration schemes rather than the other integration schemes. In the present study, we further investigate the accuracy of the double exponential formula for the electron-counting integrals of all the atoms from H to Kr in the periodic table to elucidate the stable performance of the double exponential radial grids. The electron densities of the atoms are calculated with the Gauss-type orbital basis functions at the B3LYP level. The quadrature accuracy and convergence behavior of numerical integration are compared among the double exponential formula and the formulas proposed by Treutler et al. and by Mura et al. The results reveal that the double exponential radial grids remarkably improve the convergence rate toward high accuracy compared with the previous radial grids, particularly for heavy elements in the 4th period, without fine tuning of the radial grids for each atom.     

Optimal grids for generalized finite basis and discrete variable representations: definition and method of calculation

The method of optimal generalized finite basis and discrete variable representations (FBR and DVR) generalizes the standard, Gaussian quadrature grid-classical orthonormal polynomial basis-based FBR/DVR method to general sets of grid points and to general, nondirect product, and/or nonpolynomial bases. Here, it is shown how an optimal set of grid points can be obtained for an optimal generalized FBR/DVR calculation with a given truncated basis. Basis set optimized and potential optimized grids are defined. The optimized grids are shown to minimize a function of grid points derived by relating the optimal generalized FBR of a Hamiltonian operator to a non-Hermitian effective Hamiltonian matrix. Locating the global minimum of this function can be reduced to finding the zeros of a function in the case of one dimensional problems and to solving a system of D nonlinear equations repeatedly in the case of D>1 dimensional problems when there is an equal number of grid points and basis functions. Gaussian quadrature grids are shown to be basis optimized grids. It is demonstrated by a numerical example that an optimal generalized FBR/DVR calculation of the eigenvalues of a Hamiltonian operator with potential optimized grids can have orders of magnitude higher accuracy than a variational calculation employing the same truncated basis. Nevertheless, for numerical integration with the optimal generalized FBR quadrature rule basis optimized grids are the best among grids of the same number of points. The notions of Gaussian quadrature and Gaussian quadrature accuracy are extended to general, multivariable basis functions.     

Extensive Numerical Tests of Leapfrog Integrator in Middle Thermostat Scheme in Molecular Simulations

Accurate and efficient integration of the equations of motion is indispensable for molecular dynamics (MD) simulations. Despite the massive use of the conventional leapfrog (LF) integrator in modern computational tools within the framework of MD propagation, further development for better performance is still possible. The alternative version of LF in the middle thermostat scheme (LF-middle) achieves a higher order of accuracy and efficiency and maintains stable dynamics even with the integration time stepsize extended by several folds. In this work, we perform a benchmark test of the two integrators (LF and LF-middle) in extensive conventional and enhanced sampling simulations, aiming at quantifying the time-stepsize-induced variations of global properties (e.g., detailed potential energy terms) as well as of local observables (e.g., free energy changes or bond-lengths) in practical simulations of complex systems. The test set is composed of six chemically and biologically relevant systems, including the conformational change of dihedral flipping in the N-methylacetamide and an AT (Adenine-Thymine) tract, the intra-molecular proton transfer inside malonaldehyde, the binding free energy calculations of benzene and phenol targeting T4 lysozyme L99A, the hydroxyl bond variations in ethaline deep eutectic solvent, and the potential energy of the blue-light using flavin photoreceptor. It is observed that the time-step-induced error is smaller for the LF-middle scheme. The outperformance of LF-middle over the conventional LF integrator is much more significant for global properties than local observables. Overall, the current work demonstrates that the LF-middle scheme should be preferably applied to obtain accurate thermodynamics in the simulation of practical chemical and biological systems.     

Inherent speedup limitations in multiple time step/particle mesh Ewald algorithms

Multiple time step (MTS) algorithms present an effective integration approach to reduce the computational cost of dynamics simulations. By using force splitting to allow larger time steps for the more slowly varying force components, computational savings can be realized. The Particle-Mesh-Ewald (PME) method has been independently devised to provide an effective and efficient treatment of the long-range electrostatics interactions. Here we examine the performance of a combined MTS/PME algorithm previously developed for AMBER on a large polymerase beta/DNA complex containing 40,673 atoms. Our goal is to carefully combine the robust features of the Langevin/MTS (LN) methodology implemented in CHARMM-which uses position rather than velocity Verlet with stochasticity to make possible outer time steps of 150 fs-with the PME formulation. The developed MTS/PME integrator removes fast terms from the reciprocal-space Ewald component by using switch functions. We analyze the advantages and limitations of the resulting scheme by comparing performance to the single time step leapfrog Verlet integrator currently used in AMBER by evaluating different time-step protocols using three assessors for accuracy, speedup, and stability, all applied to long (i.e., nanosecond) simulations to ensure proper energy conservation. We also examine the performance of the algorithm on a parallel, distributed shared-memory computer (SGI Origin 2000 with 8 300-MHz R12000 processors). Good energy conservation and stability behavior can be demonstrated, for Newtonian protocols with outer time steps of up to 8 fs and Langevin protocols with outer time steps of up to 16 fs. Still, we emphasize the inherent limitations imposed by the incorporation of MTS methods into the PME formulation that may not be widely appreciated. Namely, the limiting factor on the largest outer time-step size, and hence speedup, is an intramolecular cancellation error inherent to PME. This error stems from the excluded-nonbonded correction term contained in the reciprocal-space component. This cancellation error varies in time and introduces artificial frequencies to the governing dynamics motion. Unfortunately, we find that this numerical PME error cannot be easily eliminated by refining the PME parameters (grid resolution and/or order of interpolating polynomial). We suggest that methods other than PME for fast electrostatics may allow users to reap the full advantages from MTS algorithms.     

Localized exchange-correlation potential from second-order self-energy for accurate Kohn-Sham energy gap

A local Kohn-Sham (KS) exchange-correlation potential is derived by localizing the second-order self-energy operator, using approximations to the linear response Sham-Schlüter equation. Thanks to the use of the resolution-of-identity technique for the calculation of the self-energy matrix elements, the method is very efficient and can be applied to large systems. The authors investigate the KS energy gaps and lowest excitation energies of atoms and small- and medium-size molecules. Reference KS energy gaps (from accurate densities) of atoms and small molecules can be reproduced with great accuracy. For larger systems they found that the KS energy gap is smaller than the one obtained from the local-density approximation, showing the importance of an ab initio correlation in the Kohn-Sham potential.     

A divide and conquer real-space approach for all-electron molecular electrostatic potentials and interaction energies

A computational scheme to perform accurate numerical calculations of electrostatic potentials and interaction energies for molecular systems has been developed and implemented. Molecular electron and energy densities are divided into overlapping atom-centered atomic contributions and a three-dimensional molecular remainder. The steep nuclear cusps are included in the atom-centered functions making the three-dimensional remainder smooth enough to be accurately represented with a tractable amount of grid points. The one-dimensional radial functions of the atom-centered contributions as well as the three-dimensional remainder are expanded using finite element functions. The electrostatic potential is calculated by integrating the Coulomb potential for each separate density contribution, using our tensorial finite element method for the three-dimensional remainder. We also provide algorithms to compute accurate electron-electron and electron-nuclear interactions numerically using the proposed partitioning. The methods have been tested on all-electron densities of 18 reasonable large molecules containing elements up to Zn. The accuracy of the calculated Coulomb interaction energies is in the range of 10(-3) to 10(-6) E(h) when using an equidistant grid with a step length of 0.05 a(0).     

Optimized effective potential method: is it possible to obtain an accurate representation of the response function for finite orbital basis sets?

The optimized effective potential (OEP) equations are solved in a matrix representation using the orbital products of occupied and virtual orbitals for the representation of both the local potential and the response function. This results in a direct relationship between the matrix elements of local and nonlocal operators for the exchange-correlation potential. The effect of the truncation of the number of such products in the case of finite orbital basis sets on the OEP orbital and total energies and on the spectrum of eigenvalues of the response function is examined. Test calculations for Ar and Ne show that rather large AO basis sets are needed to obtain an accurate representation of the response function.     

Orbital energies and negative electron affinities from density functional theory: Insight from the integer discontinuity

Orbital energies in Kohn-Sham density functional theory (DFT) are investigated, paying attention to the role of the integer discontinuity in the exact exchange-correlation potential. A series of closed-shell molecules are considered, comprising some that vertically bind an excess electron and others that do not. High-level ab initio electron densities are used to calculate accurate orbital energy differences, Deltavarepsilon, between the lowest unoccupied molecular orbital (LUMO) and the highest occupied molecular orbital (HOMO), using the same potential for both. They are combined with accurate vertical ionization potentials, I(0), and electron affinities, A(0), to determine accurate "average" orbital energies. These are the orbital energies associated with an exchange-correlation potential that averages over a constant jump in the accurate potential, of magnitude Delta(XC)=(I(0)-A(0))-Deltavarepsilon, as given by the discontinuity analysis. Local functional HOMO energies are shown to be almost an order of magnitude closer to these average values than to -I(0), with typical discrepancies of just 0.02 a.u. For systems that do not bind an excess electron, this level of agreement is only achieved when A(0) is set equal to the negative experimental affinity from electron transmission spectroscopy (ETS); it degrades notably when the zero ground state affinity is instead used. Analogous observations are made for the local functional LUMO energies, although the need to use the ETS affinities is less pronounced for systems where the ETS values are very negative. The application of an asymptotic correction recovers the preference, leading to positive LUMO energies (but bound orbitals) for these systems, consistent with the behavior of the average energies. The asymptotically corrected LUMO energies typically agree with the average values to within 0.02 a.u., comparable to that observed with the HOMOs. The study provides numerical support for the view that local functionals exhibit a near-average behavior based on a constant jump of magnitude Delta(XC). It illustrates why a recently proposed DFT expression involving local functional frontier orbital energies and ionization potential yields reasonable estimates of negative ETS affinities and is consistent with earlier work on the failure of DFT for charge-transfer excited states. The near-average behavior of the exchange-correlation potential is explicitly illustrated for selected systems. The nature of hybrid functional orbital energies is also mentioned, and the results of the study are discussed in terms of the variation in electronic energy as a function of electron number. The nature of DFT orbital energies is of great importance in chemistry; this study contributes to the understanding of these quantities.     

元素电负性和硬度的密度泛函理论研究

应用密度泛函理论的DFT LDA、DFT LDA/NL和改进的Slater过渡态方法,把元素的电离能和电子亲合能的计算扩展到周期表的103种元素.并用有限差分方法计算了这103种元素的电负性和硬度.计算中考虑了相对论效应.计算结果比以前Robles等用密度泛函理论的XGL和Xα近似的交换相关泛函的计算结果有所改进,更接近实验值.