Structure of metal adducts of anthracyclines probed by absorption,circular dichroism and paramagnetic NMR

A structural study of metal ion adducts of a new anthracycline disaccharide (MEN 10755) was undertaken. The trivalent lanthanide ion Yb(III) was employed as paramagnetic structural probe for ¹H NMR analysis. Through a comparative spectroscopic investigation [UV–Vis absorption and circular dichroism (CD), ¹H NMR], the isomorphism between its adducts with lanthanide ions (La³⁺, Yb³⁺, Lu³⁺) and calcium (one of the most representative biological cations) was verified. Solution behavior and cation binding were also investigated by means of optical titrations. In agreement with other anthracyclines, MEN 10755 was found to dimerize in aqueous solution [estimated K_dim (pH7.6) = 7 × 10³], but not in methanol. A prevalent complex Yb³⁺–MEN 10755 (1:1) in both buffered aqueous and methanolic solutions (estimated K_compl = 2100 M ^?1) was observed. A numerical analysis of the LIR and LIS ¹H NMR literature data for a similar adduct (Yb³⁺–daunorubicin) was performed using newly developed software, PERSEUS (Paramagnetic Enhanced Relaxation and Shifts for Eliciting Ultimate Structures), and the structure of the complex was characterized, locating definitely the binding site on the O‐11, O‐12 quinone system. The components of the anisotropic part of the magnetic susceptibility tensor were also determined. Finally, a study of the time‐dependent formation of an Yb³⁺–MEN 10755 complex through ¹H NMR, UV–Vis CD and induced NIR CD was carried out. Copyright © 2002 John Wiley & Sons, Ltd.     

Laser-induced NMR shift of a paramagnetic system

Perturbation theory on optical ac Stark effect is applied to study the NMR spectroscopy in paramagnetic systems. Application of the circularly or linearly polarized optical field would lead to shifts in the NMR lines, which is proportional to the laser intensity and the induced polarizability tensors by hyperfine interaction. The induced shift for 193Ir NMR spectrum of [IrBrg]2- is expected to be of the order of 1-10 Hz as resonance is approached with light intensity 10 W·cm-2. For the supersonic molecular beam samples 193IrC, the laser-induced NMR shift is estimated to be as large as 1-10 MHz near resonance.     

A justification for using NMR model-free methods when investigating the solution structures of rhombic paramagnetic lanthanide complexes

The detailed analysis of the 1H NMR hyperfine shifts according to the model-free methods shows that the semi-rigid monometallic complexes [Ln(L)(NO3)3] (Ln = Eu-Yb) are isostructural in solution. The associated separation of contact and pseudo-contact contributions to the hyperfine NMR shifts in each rhombic lanthanide complex at room temperature provides paramagnetic susceptibility tensors whose principal magnetic axes match the expected symmetry requirements. Moreover, both axial (Delta chi(ax)) and rhombic (Delta chi(rh)) paramagnetic anisotropies display satisfactory linear dependence on Bleaney's factors, a correlation predicted by the approximate high-temperature expansion of the magnetic susceptibility limited to T(-2). Consequently, the simple, and chemically attracting NMR model-free methods are not limited to axial systems, and can be safely used for the investigation of the solution structures of any lanthanide complexes. Molecular-based structural criteria for the reliable estimation of paramagnetic susceptibility tensors by NMR are discussed, together with the assignment of the labels of the crystal-field and magnetic axes within Bleaney's approach.     

Strategies for measurements of pseudocontact shifts in protein NMR spectroscopy.

Paramagnetic metal ions bound to proteins generate a dipolar field that can be accurately probed by pseudocontact shifts (PCS) displayed by the protein's nuclear spins. PCS are highly useful for determining the coordinates of individual spins in the molecule and for rapid structure determinations of entire protein-protein and protein-ligand complexes. However, PCS measurements require reliable resonance assignments for the molecule in its paramagnetic state and in a diamagnetic reference state. This article discusses different approaches for pairwise resonance assignments, with emphasis on a strategy which exploits chemical exchange between the two states.     

NMR spectra of paramagnetic complexes of 1-vinylimidazole with iron group metals

The high-resolution ¹H and ¹³C NMR spectra of 1-vinylimidazole complexes with iron group metals were recorded. The contact coupling in these systems was established in the ¹H and ¹³C NMR spectra. The applicability of the NMR spectra transformed by long-range hyperfine coupling for elucidating the molecular structure of the ligand was shown. Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 6, pp. 1430–1433, June, 2005.     

Structural studies of {Li} 2-lithiopyrrolidines using NMR spectroscopy

A selection of N-substituted 2-lithiopyrrolidines were prepared and their structures were investigated by ⁶Li and ¹³C NMR spectroscopy. Evidence is presented for aggregation and dynamic solvation effects, depending on the nature of the N-substituent and substituents on the pyrrolidine ring. Studies were performed with N-Boc (coordinating carbonyl group), N-methoxyethyl (coordinating methoxy group) and N-alkyl (no coordinating group) heterocycles to represent three different classes of organolithiums: dipole-stabilized, unstabilized and chelated, and unstabilized.     

Structural characterization of proteins with an attached ATCUN motif by paramagnetic relaxation enhancement NMR spectroscopy

The use of a short, three-residue Cu(2+)-binding sequence, the ATCUN motif, is presented as an approach for extracting long-range distance restraints from relaxation enhancement NMR spectroscopy. The ATCUN motif is prepended to the N-termini of proteins and binds Cu(2+) with a very high affinity. Relaxation rates of amide protons in ATCUN-tagged protein in the presence and absence of Cu(2+) can be converted into distance restraints and used for structure refinement by using a new routine, PMAG, that has been written for the structure calculation program CNS. The utility of the approach is demonstrated with an application to ATCUN-tagged ubiquitin. Excellent agreement between measured relaxation rates and those calculated on the basis of the X-ray structure of the protein have been obtained.     

Structural characterization and quantitation of compound loading of disubstituted benzoates bound to Wang resin through high-resolution magic angle spinning NMR spectroscopy

The combination of 1D and 2D high-resolution magic angle spinning NMR experiments led to the assignment of the proton and carbon resonances for several disubstituted benzoates bound to a polystyrene resin through a Wang linker. It is shown that the signal corresponding to the methylene protons of the linker can be utilized to monitor the solid-phase reactions and determine the loading of the compounds on the resin.     

Structural and dynamical studies of poly(vinyl alcohol) gels by high-resolution solid-state C NMR spectroscopy

The ¹³C CP/MAS NMR spectra of isotactic, syndiotactic and atactic poly(vinyl alcohol) (PVA) gels were measured in order to clarify the structure of the immobile component of PVA gel. In the ¹³C CP/MAS NMR spectra, the three CH carbon peaks I, II and III (at about 77, 71 and 65 ppm) were clearly observed, which originate from the formation of strong intermolecular or intramolecular hydrogen bonds between hydroxyl groups like solid PVA. It has been assigned that these peaks originate from the crosslinked region in the gel state. On the basis of the experimental results, intermolecular hydrogen bonds play an important role in the formation of the crosslinked-region in the gel state. Further, the effect of PVA's tacticity on the amount of the crosslinked regions by intermolecular interactions was discussed. In addition, molecular motion in the immobile and mobile region of PVA gel was discussed through the observation of ¹³C spin-lattice relaxation time T₁.     

Structural flexibility of titanocene diselenolene complexes: Combined structural and VT NMR investigations

A comparative investigation on five different Cp₂Ti(diselenolene) complexes, i.e. Cp₂Ti(Se₂C₂Z₂) (Z = -CO₂Me), Cp₂Ti[Se₂C₂Z(CF₃)], Cp₂Ti(bds) (bds = 1,2-benzene-diselenato), Cp₂Ti(dsit) (dsit = 1,3-dithiole-2-thione-4,5-diselenato) and Cp₂Ti(ddds) (ddds = 5,6-dihydro-1,4-dithiine-2,3-diselenato) is performed based on structural and variable-temperature NMR data. Preparation of Cp₂Ti[Se₂C₂Z(CF₃)] involves the reaction of Cp₂TiSe₅ with an excess of methyl-4,4,4-trifluorotetrolate while Cp₂Ti(bds) is obtained from the bds²⁻ diselenolate and Cp₂TiCl₂. Their X-ray crystal structures have been determined, showing that Cp₂Ti(bds) is not isostructural with the sulfur analog Cp₂Ti(bdt). Similarly the structures of Cp₂Ti(dsit) and Cp₂Ti(Se₂C₂Z₂) were also determined from single crystal X-ray diffraction. All complexes exhibit a strong folding of the metallacycle along the Se?Se hinge, ranking from 47.8° in Cp₂Ti(Se₂C₂Z₂) to 52.3° in Cp₂Ti(ddds). VT NMR investigations on Cp₂Ti[Se₂C₂Z(CF₃)] and Cp₂Ti(ddds), complementing earlier results on the other complexes, show that the largest activation energies and associated folding angles are observed with the most electron rich diselenolenes (ddds, bds), a behavior closely related to that observed earlier in dithiolene complexes.     

Solid-state NMR spectra of paramagnetic silica-based materials: observation of 29Si and 27Al nuclei in the first coordination spheres of manganese ions

Some silica-based solids, prepared by the sol/gel method in the presence of high Mn2+ concentrations, have been characterized by the 29Si, 27Al MAS NMR spectra and 29Si T1 measurements. The single-pulse 29Si and 27Al MAS NMR spectra have shown broad spinning sideband patterns that are interpreted in terms of anisotropic bulky magnetic susceptibility (BMS) and dipole-field effects. In the absence of paramagnetic isotropic shifts, the 29Si and 27Al nuclei observed in the single-pulse NMR spectra have been assigned to nuclei remote from paramagnetic centers. It has been demonstrated that the 29Si and 27Al nuclei, which are in the vicinity of the manganese ions, can be detected by the Hahn-echo MAS NMR experiments at different carrier frequencies.     

Paramagnetic properties of the halide-bound derivatives of oxidised tyrosinase investigated by 1H NMR spectroscopy

The (1)H NMR relaxation characteristics of the histidines in the oxidised type-3 copper site of tyrosinase (Ty(met)) from the bacterium Streptomyces antibioticus in the halide-bound forms (Ty(met)X with X = F(-), Cl(-), Br(-)) have been determined and analysed. The (1)H NMR spectra of the Ty(met)X species display remarkably sharp, well-resolved, paramagnetically shifted (1)H signals, which originate from the protons of the six His residues coordinated to the two Cu(II) ions in the type-3 centre. From the temperature-dependence of the (1)H paramagnetic shifts the following values for the exchange-coupling parameter -2J were determined: 260 (Ty(met)F), 200 (Ty(met)Cl) and 162 cm(-1) (Ty(met)Br). The (1)H T(1) relaxation is dipolar in origin and correlates with the Cu--H distances. Electronic relaxation times tau(S) derived from the (1)H T(1) data amount to about 10(-11) s and follow the order Ty(met)F>Ty(met)Cl>Ty(met)Br. They are two orders of magnitude shorter than the tau(S) values reported for mononuclear copper systems, in accordance with the sharpness of the (1)H signals. The results corroborate the Cu(2) bridging mode of the halide ions. On the basis of the measured hyperfine interaction constants for the ligand histidine nuclei, it is concluded that 70-80 % of the spin density in the excited triplet state resides on the two copper ions and the bridging atoms.     

Structural determination of diterpenes from Daphne genkwa by NMR spectroscopy

Five daphnane type diterpenes have been isolated from the chloroform soluble fraction of Daphne genkwa. The structure of the new compound (1) was assigned as 5beta-hydroxyresiniferonol-6alpha,7alpha-epoxy-12beta-acetoxy-9,13,14-ortho-2E-decenoate by extensive NMR studies.     

NMR spectroscopy of intermetallic compounds: an experimental and theoretical approach to local atomic arrangements in binary gallides

The results of the investigation of MGa(2) with M = Ca, Sr, Ba and of MGa(4) with M = Na, Ca, Sr, Ba by a combined application of NMR spectroscopy and quantum mechanical calculations are comprehensively evaluated. The electric-field gradient (EFG) was identified as the most reliable measure to study intermetallic compounds, since it is accessible with high precision by quantum mechanical calculations and, for nuclear spin I>1/2, by NMR spectroscopy. The EFG values obtained by NMR spectroscopy and quantum mechanical calculations agree very well for both series of investigated compounds. A deconvolution of the calculated EFGs into their contributions reveals its sensitivity to the local environment of the atoms. The EFGs of the investigated di- and tetragallides are dominated by the population of the p(x)-, p(y)-, and p(z)-like states of the Ga atoms. A general combined approach for the investigation of disordered intermetallic compounds by application of diffraction methods, NMR spectroscopy, and quantum mechanical calculations is suggested. This scheme can also be applied to other classes of crystalline disordered inorganic materials.     

Structural studies of benzophenanthridine alkaloid free bases by NMR spectroscopy

The free bases of eight quaternary benzo[c]phenanthridine alkaloids (chelerythrine, sanguilutine, chelirubine, chelilutine, sanguirubine, sanguinarine, nitidine and fagaronine) were investigated by ¹H and ¹³C NMR spectroscopy. The pseudobases (the 6‐hydroxy‐5,6‐dihydro derivatives) were found to be the only products of the alkalization of these alkaloids using sodium carbonate in DMSO‐d₆ solution. This observation differs from the measurements of preparative free bases in CDCl₃ solution, where the structures of the bimolecular aminoacetals were unequivocally confirmed. According to the results obtained, in biological systems, in the presence of excess of water and ions, free bases of the investigated alkaloids are assumed to adopt the pseudobase (6‐hydroxy derivative) structure. In contrast, in less polar media (C₆D₆, CDCl₃), the formation of the bimolecular aminoacetal structure is preferred. Copyright © 2001 John Wiley & Sons, Ltd.