Loss of hydrogen cyanide from monocyanopyridines upon electron impact: Dewar pyridine structures and ring opening—Ring closure reactions revealed by 13C and 15N Labelling

Extensive ¹³C and ¹⁵N labelling has shown that the molecular ions of 2-, 3- and 4-cyanopyridine with lifetimes up to 10^?6 s eliminate hydrogen cyanide originating predominantly from the ring (?65%). Moreover, this hydrogen cyanide loss occurs after an equilibrated positional interchange of the ring carbon atoms at positions interchange of the ring carbon atoms at positions 2, 4 and 6 via Dewar pyridine structures. In molecular ions with lifetimes of 10^?6–10^?5 s skeletal rearrangements have taken place in such a way that both nitrogen atoms have become equivalent prior to the loss of hydrogen cyanide. Arguments are put forward that this equivalence of nitrogen atoms is caused by the intermediacy of ions with a 1,4-dicyanobuta-1,3-diene structure. About 60% of these intermediate ions eliminate hydrogen cyanide in a fast process. The remaining 40% of these ions undergo ring closure again to a pyridine ring in which the carbon atoms of positions 2, 4 and 6 are positionally interchanged rapidly via Dewar pyridine structures followed by ring opening again and eventual loss of hydrogen cyanide. This interpretation of the ¹³C and ¹⁵N labelling results is further corroborated by a study of the loss of hydrogen cyanide from molecular ions of 1,4-dicyanobuta-1,3-diene labelled with ¹³C in both cyano groups.     

Syntheses and structures of asymmetric Bis(silyl) niobocene hydrides

This paper deals with the preparation and structural investigation of asymmetric bis(silyl) niobocene hydrides, Cp2Nb(SiHMe2)(H)(SiXMe2) (2; X = F (a), Cl (b), Br (c), I (d)) and Cp2Nb(SiXMe2)(H)(SiYMe2) (X,Y= F-I; X not equal Y). Complexes 2a-d were prepared by selective electrophilic activation of the Si-H bond in Cp2Nb(SiHMe2)2(H). The Cp2Nb(SiXMe2)(H)(SiYMe2) complexes were prepared by electrophilic activation of the Si-H bond in 2a-d and, in some cases, by electrophilic exchange of the X halides in Cp2Nb(SiXMe2)2(H) (1) for other halides, Y. The structures of complexes 2b and 2c have been studied by X-ray and neutron diffraction (ND). The ND results unequivocally established that the hydride ligand in 2c is shifted toward the SiBrMe2 ligand and that in 2b is positioned symmetrically between two nonequivalent silyl groups, with the H...SiClMe2 distance being shorter because of the shorter Nb-SiClMe2 bond length. Analysis of the X-ray structures of complexes 2a-d and complexes Cp2Nb(SiXMe2)(H)(SiYMe2) shows that the largest structural distortions are observed for the silyl groups substituted by heavy halogen atoms. These trends are rationalized in terms of stronger interligand hypervalent interactions (IHI) Nb-H...Si-X for heavy atoms X from Group 7.     

Variable connectivity index for cycle-containing structures.

In the early applications of the connectivity index the index was empirically modified for some properties of cyclic structures by subtracting 1/2 from the computed value based solely on valence of vertices in the molecular graph. In this article we looked into the origin of this heuristic adjustment of the connectivity indices for cyclic structures. We have examined the relative role of carbon atoms in cycle-containing structures by differentiating carbon atoms making up a ring and carbon atoms in exocyclic bonds. We found in the case of the boiling points of cycloalkanes and alkylcycloalkanes that contributions of "cyclic" and "acyclic" atoms to molecular additivities differ somewhat.     

Growth and Formation of Fullerene Clusters

Theoretical studies on the stability and electronic structure of small carbon clusters assuming chain, ring, bowl, and fullerene structures have been carried out using a linear combination of atomic orbitals molecular orbital approach within a density functional formalism. Our studies on clusters containing between 12 and 60 atoms indicate three regimes for the growth and formation of carbon clusters. In clusters containing less than 20 atoms, the most stable geometry is the ring arrangements. Between 20 and 28 atoms, clusters with very different geometry have comparable energies. For clusters with larger than 30 atoms, the fullerene structures are the most stable structures. An analysis of the electronic structure shows a distinct correlation between the geometry and the nature of electronic states.     

Surface enhanced Raman spectroscopic characterization of molecular structures in diamond-like carbon films

Vibrational bands associated with the out of plane bending modes of CH groups attached to various aromatic ring structures have been identified in surface enhanced Raman spectra of diamond-like amorphous carbon films deposited by femtosecond laser ablation of graphite. The appearance of enhanced modes associated with specific ring structures is assigned to solo-, duo-, trio- and quartet-CH groups and to pendant rings. Analysis of these bands provides insight into the nature of the molecular ring components of fs-DLC films. The resulting composition consists of polycyclic aromatic carbon (PAH)-like ring molecules and polyyne chains stabilized in a sp³-bonded network.     

Thermodynamic stability of 2,4,6-tris(nitromethyl)-1,3,5-triazine: an experimental and theoretical study

The molecular geometries and electronic structures of 2,4,6-tris(nitromethyl)-1,3,5-triazine isomers were investigated by the density functional method DFT/B3LYP/6-311++G** to elucidate the structural factors responsible for the stability of these systems. It was shown that a characteristic feature of the nitromethyl tautomer (1) of 2,4,6-tris (nitromethyl)-1,3,5-triazine consists in nonvalence interactions between an oxygen atom of nitro group and a carbon atom of triazine ring, which are probably due to Coulomb attraction between them. The tautomer with the 2,4,6-tris (nitromethylene)-hexahyrdo-1,3,5-triazine structure (2) is stabilized trough direct polar conjugation between the amino and nitro groups at the double bond. Structural strain of the molecule with the 2,4,6-tris(aci-nitromethyl)-1,3,5-triazine structure (3) is the reason for its thermodynamic instability. X-ray data indicate that the compound under study exists in the triazine tautomeric form 1 and the distances between oxygen atoms of nitro group and carbon atom of the triazine ring are shortened. NMR data suggest the existence of triazine in the nitromethyl form 1 in acetonitrile and acetone and a tautomeric equilibrium between the nitromethyl and nitromethylene forms in a more polar solvent (DMSO). The results obtained suggest a Coulomb-type stabilization of the 2,4,6-tris(nitromethyl)-1,3,5-triazine molecule in the gas phase, in the crystal, and in nonpolar solvents.     

The synthesis and chemical reactions of certain pyrazolo[1,5-a]-1,3,5-triazines

3-Aminopyrazole was utilized as a starting material for the preparation of certain pyrazolo-[1,5-a]-1,3,5-triazines. 4-Chloro-2-methylthiopyrazolo[1,5-a]-1,3,5-triazine was prepared and used for studies of nucleophilic displacement reactions, and it has been found that both the chloro and methylthio groups may be displaced by nucleophiles. By modifications of these procedures we have prepared the adenine, hypoxanthine, and xanthine analogs of the pyrazolo-[1,5-a]-1,3,5-triazine ring system. Electrophilic substitution occurs in the 8-position of this ring system. The methyl group was introduced into the 4-position by a novel ring opening and ring closing of the 1,3,5-triazine ring.     

Density functional theory studies of effects of boron replacement on the structure and property of RDX and HMX

In this study, based on two model nitramine compounds hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) and octahydro-1,3,5,7-tetranitro-1,3,5, 7-tetrazocine (HMX), two series of new energetic molecules were designed by replacing carbon atoms in the ring with different amounts of boron atoms, their structures and performances were investigated theoretically by the density functional theory method. The results showed that the boron replacement could affect the molecular shape and electronic structure of RDX and HMX greatly, and then would do harm to the main performance like the heat of formation, density, and sensitivity. However, the compound RDX-B2 is an exception; it was formed by replacing two boron atoms into the system of RDX and has the symmetric boat-like structure. Its oxygen balance (4.9%), density (1.91 g/cm³), detonation velocity (8.85 km/s), and detonation pressure (36.9 GPa) are all higher than RDX. Furthermore, RDX-B2 has shorter and stronger N NO₂ bonds than RDX, making it possesses lower sensitivity (45 cm) and better thermal stability (the bond dissociation energy for the N NO₂ bond is 204.7 kJ/mol) than RDX. Besides, RDX-B1 and HMX-B4 also have good overall performance; these three new molecules may be regarded as a new potential candidate for high energy density compounds.     

Additivity of ring distortions in halogen-substituted aromatics: a gas-phase electron diffraction and computational study

The gas-phase structures of 1,2,3-trifluorobenzene, 1,3,5-trifluorobenzene, 2,6-difluoropyridine, and 2,6-dichloropyridine have been determined using electron diffraction and computational methods. The accuracy afforded by modern experimental methods has allowed subtle trends to be identified in the geometrical parameters of the rings. Comparisons have also been made between experimental and theoretical structures. Although the effects of multiple fluorine substituents on a benzene ring are shown to be more or less additive, distortions caused by replacement of a ring carbon atom by nitrogen and by halogen substituents are not.     

Calixrotanes: Calixarenes Incorporating Spiro-Linked Cyclopropyl Groups

Macrocyclic compounds (calix[4]- and calix[6]arene derivatives) with aryl rings interconnected by spirocyclopropyl groups have been synthesized and structurally characterized. The compounds were prepared by the reaction of dichlorocarbene with calixarenes possessing exocyclic double bonds at the bridges, followed by reductive perdechlorination of the spirocyclopropyl groups. In all systems, pairs of geminal rings connected to the quaternary spiro carbon atoms are oriented anti, and the methylene groups of the cyclopropyl rings are located in isoclinal positions. Calix[6]rotane adopts in the crystal and in solution a 1,3,5-alternate conformation. The presence of the spirocyclopropyl groups increases the rigidity of the macrocyclic ring.     

Theoretical study of structures and properties of cyclobutadiene, cyclopentadiene and benzene and their nitrogen isoelectronic equivalents

B3LYP/aug-cc-pvDZ level of theory is applied to study the geometric structures, electronic topologies, heats of formation, hyperconjugations and steric repulsions of 27 kinds of compounds obtained by successive replacement of CH groups with nitrogen atoms in cyclobutadiene, cyclopentadiene and benzene. The results reveal that the total energy linearly decreases along with the replacement of CH groups by nitrogen atoms for the three systems. To estimate the potential of high nitrogen content high energy materials (HNC–HEMs), heats of formation are calculated by G3 method. With the increase of the number of nitrogen atoms in ring, heats of formation increase substantially. The four-membered ring system is found to have the greatest heat of formations, followed by the six-membered ring system, and then by the five-membered ring system. Especially, hexazine and tetraazacyclobutadiene have great heats of formation relative to the other compounds, which implies that they should be applicable as HNC–HEMs. In addition, our studies indicate that the relationship between the total energy or heats of formation of isomers and the position of nitrogen atoms is (ortho) meta < (ortho) para < ortho. NBO analysis shows that it is hyperconjugation, not steric repulsion that plays a key role in the relative stability of isomers.     

Interactions between organic molecules and water: rotational spectrum of the 1:1 oxetane-water complex

The 1:1 molecular complex between oxetane and water has been investigated by using free-jet millimeter-wave spectroscopy. The rotational spectra of five isotopomers (with H(2)O, D(2)O, DOH, HOD and H(2) (18)O) have been assigned. Partial r(0) and r(s) structures of the complex have been derived. The water moiety lies in the plane of symmetry of oxetane, with the "free" hydrogen E with respect to the ring. The oxetane ring appears to be slightly nonplanar, with the C(beta) carbon tilted on the opposite side of the water unity. The three atoms involved in the hydrogen bond adopt a linear arrangement with an O(ring).H distance of about 1.86 A, and the angle between the COC bisector and the O(ring).H bond being congruent with 106 degrees. Additionally, quantum-chemical calculations for the complex were performed and were found to be in agreement with the experimental results.     

C NMR spectra of cyclomercurated ferrocenylimines: Substituent effects and conformations in the ferrocenes

Three series of cyclomercurated ferrocenylimines (2-chloromercurio-ferrocenylimines) have been studied using ¹³C NMR spectroscopy. Good to excellent linear relationships have been found to exist between the chemical shifts of the carbon atoms in the ferrocenyl moiety and normal Hammett substituent constants σ_m and σ_p. The δ values of the iminyl carbon atoms show excellent linear correlations with the σ values. In three series of the ferrocenes, the sensitivity of the carbon atoms to the substituent effect is different, which is discussed in terms of the twist angle between the N-phenyl ring and the C---C=N---C plane. The relative sensitivity of the chemical shifts on different positions in ferrocenyl moiety to the substituent effect has also been presented.     

New ferrocene-containing structures: Poly(silyl ester)s

Two new polymeric structures containing ferrocene units along the chains, namely poly(silyl ester)s, have been synthesized and characterized: a geminal poly(silyl ester) (g-PSE) and one having a disiloxane spacer between the silyl ester groups (s-PSE). The condensation polymerization of AA/BB monomer systems in solution was used in both cases as preparation method involving a silicon-containing diol, (diphenylsilane diol or 1,3-bis(hydroxy)-tetramethyldisiloxane), and 1,1′-di(chlorocarbonyl)ferrocene. The polymers were investigated by differential pulse voltammetry in order to evaluate the redox behavior. Due to the presence of the silyl ester groups in the chain, these polymers are hydrolytically degradable.     

Synthesis and solid-state structures of dimethyl 2,2'-bithiophenedicarboxylates

The syntheses of dimethyl 2,2'-bithiophene-4,4'-dicarboxylate (3), dimethyl 2,2'-bithiophene-3,4'-dicarboxylate (4), and dimethyl 2,2'-bithiophene-3,3'-dicarboxylate (5) are described. Single-crystal X-ray structural analysis of these compounds shows that the thiophene rings in 3 and 4 are nearly coplanar (dihedral angle close to 0 degrees ) and they adopt the anti sulfur conformation in the solid state. Further, the structure of 4 is in agreement with our previous suggestion that there is an electrostatic stabilization of the planar structure due to attraction of the 3-carbonyl oxygen to the sulfur of the distal ring. In 5, however, the thiophene rings are nearly perpendicular (dihedral angle 75 degrees ), indicating considerable steric hindrance between the two large ester groups at the 3- and 3'-positions. Unlike compounds 3 and 4, where the thiophene rings have the sulfur atoms anti, the sulfur atoms in 5 are completely syn. This is the first instance where a bithiophene has been shown to adopt a conformation where the sulfur atoms are completely syn. The solid-state conformations of 3, 4, and 5 are in agreement with ab initio theoretical calculations on these compounds; particularly, the planar conformations of 3 and 4 reflect the previously calculated low rotation barriers of these molecules.     

Aromatic-aromatic interactions in crystal structures of helical peptide scaffolds containing projecting phenylalanine residues

Aromatic-aromatic interactions between phenylalanine side chains in peptides have been probed by the structure determination in crystals of three peptides: Boc-Val-Ala-Phe-Aib-Val-Ala-Phe-Aib-OMe, I; Boc-Val-Ala-Phe-Aib-Val-Ala-Phe-Aib-Val-Ala-Phe-Aib-OMe, II; Boc-Aib-Ala-Phe-Aib-Phe-Ala-Val-Aib-OMe, III. X-ray diffraction studies reveal that all three peptides adopt helical conformations in the solid state with the Phe side chains projecting outward. Interhelix association in the crystals is promoted by Phe-Phe interactions. A total of 15 unique aromatic pairs have been characterized in the three independent crystal structures. In peptides I and II, the aromatic side chains lie on the same face of the helix at i/i + 4 positions resulting in both intrahelix and interhelix aromatic interactions. In peptide III, the Phe side chains are placed on the opposite faces of the helix, resulting in exclusive intermolecular aromatic interactions. The distances between the centroids of aromatic pair ranges from 5.11 to 6.86 A, while the distance of closest approach of ring carbon atoms ranges from 3.27 to 4.59 A. Examples of T-shaped and parallel-displaced arrangements of aromatic pairs are observed, in addition to several examples of inclined arrangements. The results support the view that the interaction potential for a pair of aromatic rings is relatively broad and rugged with several minima of similar energies, separated by small activation barriers.     

New phenylboronic esters derived from inositol [1]

We have prepared two new tetracyclic phenylboronic esters 4 and 5 derived from myo-inositol and from 1,2-O-isopropylidene-myo-inositol, respectively. The structures of these compounds were established from NMR and IR spectra, elemental analyses, and an X-ray diffraction study in the case of 4 . Compound 4 is a tetracyclic derivative of the less stable conformer of inositol (five axial hydroxy groups and one equatorial) with two dioxaboroline rings at opposite faces of the six-membered ring, one formed between the boron atom and the axial hydroxyl groups at C-3 and C-5 and the other between the boron atom and the hydroxyl groups at C-4 and C-6, and a dioxaborolidine ring bridging C-1 and C-2 at axial and equatorial positions. A similar structure was found for 5 with the difference that bridging C-1 and C-2 there is a dioxolane ring. The boron atoms are planar with their attached atoms, stabilized by retrocoordination between the boron and oxygen and carbon atoms, respectively. The two phenyl rings that are in the same face of the molecule are essentially parallel, with a dihedral angle between planes of 28.26 ± 0.79°.     

Syntheses, structures, and photoluminescence properties of metal(II) halide complexes with pyridine-containing flexible tripodal ligands

Seven coordination compounds, [Zn(L3)Cl2] . MeOH . H2O (1), [Mn(L3)2Cl2] . 0.5EtOH . 0.5H2O (2), [Cu3(L2)2Cl6] . 2DMF (3), [Cu3(L2)2Br6] . 4MeOH (4), [Hg2(L4)Cl4] (5), [Hg2(L4)Br4] (6), and [Hg3(L4)2I6] . H2O (7), were synthesized by the reactions of ligands 1,3,5-tris(3-pyridylmethoxyl)benzene (L3), 1,3,5-tris(2-pyridylmethoxyl)benzene (L2), and 1,3,5-tris(4-pyridylmethoxyl)benzene (L4) with the corresponding metal halides. All the structures were established by single-crystal X-ray diffraction analysis. In complexes 1 and 2, L3 acts as a bidentate ligand using two of three pyridyl arms to link two metal atoms to result in two different 1D chain structures. In complexes 3 and 4, each L2 serves as tridentate ligand and connects three Cu(II) atoms to form a 2D network structure. Complexes 5 and 6 have the same framework structure, and L4 acts as a three-connecting ligand to connect Hg(II) atoms to generate a 3D 4-fold interpenetrated framework, while the structure of complex 7 is an infinite 1D chain. The results indicate that the flexible ligands can adopt different conformations and thus can form complexes with varied structures. In addition, the coordination geometry of the metal atom and the species of the halide were found to have great impact on the structure of the complexes. The photoluminescence properties of the complexes were investigated, and the Zn(II), Mn(II) and Hg(II) complexes showed blue emissions in solid state at room temperature.     

EPR characterization of new phosphavinyl σ radicals

A number of radicals have been added to 1,3-bis(2,4,6-tri-tert-butylphenyl)diphospha-allene at low temperature in cyclopropane solution. Addition of thiyl and alkoxyl radicals occurs regiospecifically to one of the phosphorus atoms leading to new phosphavinyl radicals, isoelectronic with vinyl radicals, which have been characterised by means of EPR spectroscopy. The results of ab initio calculations are in agreement with the experimentally determined spectral parameters and suggest that these radicals are bent, with a PCP bond angle of ca. 150°. In contrast, silyl and germyl radicals appear to add to the carbon atom of the phosphaallene.     

新磺酰脲类化合物的合成及除草活性

新磺酰脲类化合物的合成及除草活性;嘧啶;合成;除草剂