Molecular orbital studies of hydrogen bonds

The ground state, the lowest singlet and triplet n-* states, and the lowest triplet -* state of the formic acid monomer and dimer are studied with the ab initio molecular orbital theory. The two-configuration electron-hole potential method is used for calculations of excited states of dimers. The potential energy curves for the symmetrical simultaneous movement of two bridging protons are studied for all of the states. The barrier of the proton transfer in the ground state is found to be the smallest of the states studied. The association energy is analyzed in terms of various components.A preliminary account has been presented at the First International Congress of Quantum Chemistry, Menton, France, 1973, and has appeared in Ref. [3].     

A study of hydrogen bond strengths of neutral water clusters (H2O) n using modified MNDO

Semi-empirical molecular orbital methods proposed up to now seriously fail to describe hydrogen bonded systems associated with (H₂O) _n . A new scheme of parametrization using a semi-empirical method is proposed. We tested hydrogen bonding associated with the water clusters (H₂O) _n . The results are found to be close to ab initio Hartree-Fock quality, indicating a good promise for studying hydrogen-bonding systems other than O-H...O moiety.     

A study of the hydrogen bond by means of comparative calculations

The nature of the hydrogen bond is investigated by means of a comparative analysis of some hydrogen bonded and hydrogen-like bonded systems. It is concluded that the hydrogen bond is determined by electrostatic interaction between the proton and the region of high electron density in the neighbour molecule.     

Theoretical study of hydrogen and deuterium bond in glutaric acid crystal dimer

In the spirit of the work of Blaise et al. [J Chem Phys, 2005, 122, 64306], we have extended their quantum theoretical approach by accounting for the intrinsic anharmonicity of the slow frequency mode, which is described by a Morse potential to reproduce the polarized infrared line shapes of glutaric acid dimer and its deuterium derivative at different temperatures. In this approach, the adiabatic approximation is performed for each separate H‐bond bridge of the dimer, and a strong nonadiabatic correction is introduced into the model via the resonant exchange between the fast mode excited states of the two moieties. Working within the strong anharmonic coupling theory, according to which the high‐frequency mode is anharmonically coupled to the H‐bond bridge, this approach incorporated the Davydov coupling between the excited states of the two moieties, the quantum direct and indirect dampings and the intrinsic anharmonicity of the H‐bond bridge. The spectral density was obtained within the linear response theory by Fourier transform of the damped autocorrelation functions. The numerical results show that the theoretical line shapes of the glutaric acid dimer are in fairly good agreement with the experimental ones. Using a minimum number of independent parameters, this theoretical approach fits correctly the experimental line shapes of the glutaric acid dimer. The effects of deuteration and temperature have been successfully reproduced by our calculations. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2012     

The influence of charges and hydrogen bond on the conformation of zwitterionic 3-(2-hydroxyalkyl-pyridinium)-propionates and their hydrobromides

The effects of intra- and intermolecular electrostatic interactions and hydrogen bonding on the conformation of 3-(2-hydroxymethyl-pyridinium)-propionic acid bromide (1) and 3-(2-hydroxyethyl-pyridinium)-propionic acid bromide (2) have been studied. In 1, the molecules are linked by Br⁻ ion to form two intermolecular hydrogen bonds COOHBrHOCH₂ (O(1)Br=3.175(3) and O(3)Br=3.305(3) Å) yielding chains. The molecules of 2 form centrosymmetric dimers connected by a pair of H-bonds between COOH and CH₂OH groups (O(1)O(3)=2.674(3) Å), and the H-bonded CH₂OH group further interacts with the Br⁻ ion (O(3)Br=3.166(5) Å). In both the compounds, the Br⁻ ion additionally interacts electrostatically with the positively charged nitrogen atom. To analyse these interactions theoretically, the structures of 3-(2-hydroxy-alkyl)pyridinium propionates (betaines) and their hydrogen bromides as monomers and dimers in various configurations are analysed by PM3 and B3LYP/6-31G(d,p) calculations. Although both electrostatic interactions and H-bonds strongly affect the conformation of the investigated compounds, the former effect seems to be dominant. FTIR spectra of 1 and 2 in the solid state are analysed.     

Theoretical study of the strong intramolecular hydrogen bond and metal-ligand interactions in group 10 (Ni, Pd, Pt) bis(dimethylglyoximato) complexes

The structural and bonding characteristics of the bis(dimethylglyoximato) complexes of group 10 transition metals ([M(dmg)₂], where M = Ni, Pd and Pt) were investigated by means of quantum chemical computations. The equilibrium geometries, energetic and bonding properties were computed using the B3P86 exchange-correlation density functional in conjunction with a 6-311+(+)G^∗∗ basis set. The computations revealed that the strong O⁻?H-O hydrogen bond exists only in the presence of the metal cations. The free (dmg)₂²⁻ ligand has significantly different geometry in which the O⁻?H-O interaction is replaced by N?O-H bonds. The characteristics of the metal-ligand interactions were determined by natural bond orbital analysis.     

Synthesis, crystal structure, hydrogen bonding and spectroscopy of transition-metal complexes with the ligand (N,N′-bis(2-pyridylmethyl)-1,3-propanediamine)

Six mononuclear complexes are reported with the tetradentate ligand N,N′-bis(2-pyridylmethyl)-1,3-propanediamine, (abbreviated as pypn) i.e. [Cu(pypn)(ClO₄)₂](H₂O)_1/2 (1), [Fe(pypn)Cl₂](NO₃) (2), [Zn(pypn)Cl](ClO₄) (3), [Co(pypn)(NCS)₂](ClO₄) (4), [Co(pypn)(N₃)₂](ClO₄) (5), [Zn(pypn)(NCS)₂] (6). The synthesis and X-ray crystal structures of all six compounds and their spectroscopic properties are presented.The geometry of the Cu²⁺, Co³⁺, Zn²⁺, Fe³⁺ ions is essentially octahedrally based, with the mm conformation (for Cu) and m_sf conformations for the other 3 metal ions; in compound 3 the geometry around the Zn²⁺ is distorted trigonal bipyramidal. The stabilisation of the crystal lattices is maintained by interesting, relative strong hydrogen bonds.     

Proton magnetic shielding in H2O and (H2O)2

The proton magnetic shielding constants in the water molecule and its linear perpendicular dimer are computed from SCF-MO-LCGO wave functions by using the uncoupled Hartree-Fock variation-perturbation procedure due to Karplus and Kolker. The convergence of the calculated shielding constants as well as their gauge dependence is studied. The final results for 17-term polynomial variation function indicate that the best choice for the gauge origin corresponds to the molecular electronic centroid.The calculated proton magnetic shielding constant in the water molecule is in remarkable agreement with experimental data and favourably compares with the best coupled Hartree-Fock results. It follows from the calculations for the water dimer that the H-bond NMR-shift amounts in this case —1.0 ppm and qualitatively agrees with the experimental data for the liquid water.     

A theoretical study of the C–HN hydrogen bond in the methane–ammonia complex

The C–HN hydrogen bond in the methane–ammonia complex is studied by determining its bond dissociation energy (BDE) and the n(N)→σ^*(C–H) interaction. At the MP2(Full)/6-311++G(3df,2p) level of theory with basis set superposition error (BSSE) correction, the BDE was determined to be 2.5 kJ mol⁻¹. The n(N)→σ^*(C–H) interaction at this level of theory was found to be 3.7 kJ mol⁻¹ by natural bond orbital (NBO) analysis. It was also found that the NBO values are in general higher than the BDE values with BSSE correction when they are compared at the same level of theory.     

Extended chains via hydrogen bond linkages of dinuclear copper(II) and cadmium(II) complexes with a new flexible disulfoxide ligand

A new flexible disulfoxide ligand 1,6-bis(benzylsulfinyl)hexane (L), which is a mixture of the meso and rac isomers, was treated with Cu^II or Cd^II nitrate and obtained dimeric complex [Cu₂(L)₃(H₂O)₂(NO₃)₄] 2 or [Cd₂(L)₃(H₂O)₂(NO₃)₄] 3. In the reacting system the crystals of meso isomer 1 of L together with 2 or 3 were obtained. 2 and 3 have similar molecular structures. In the neutral dimer, three ligands present two kinds of coordination models: monodentate and bis-monodentate. The neutral dimeric units in 2 and 3 are linked by hydrogen bonds to yield a chain structure. Crystal structures of all three compounds were determined by single-crystal X-ray diffraction methods. Crystal data for 1: monoclinic, space group Cc, a=41.95(2), b=5.132(2), c=8.660(4) Å, β=94.898(9)°, V=1857.7(15) Å³, Z=4, final refinement (I>2σ(I)): R1=0.0659, wR2=0.1415. Crystal data for 2: triclinic, space group P-1, a=9.242(4), b=9.539(4), c=21.042(9) Å, α=83.888(9), β=87.971(8), γ=74.177(9)°, V=1774.6(13) Å³, Z=2, final refinement (I>2σ(I)): R1=0.0577, wR2=0.0954. Crystal data for 3: triclinic, space group P-1, a=9.203(4), b=9.831(3), c=20.860(7) Å, α=84.313(6), β=86.432(7), γ=74.188(6)°, V=1805.9(11) Å³, Z=2, final refinement (I>2σ(I)): R1=0.0548, wR2=0.1192.     

A molecular orbital explanation of bond distance variation caused by hydrogen bond formation

For hydrogen bond systems X–D–HA–Y, a simple molecular orbital model is proposed to understand the mechanism of the bond distance variations caused by the hydrogen bond formation. This model explains the bond distance variations for X–D and A–Y as follows. Electrostatic potential that the electrons in a molecule receive from other molecules causes the changes in atomic orbital energy differences between the bonded atoms. Then, the changes in the orbital energy differences make the bond orders larger or smaller and consequently the bond distances vary. The validity of this model has been confirmed by the effective fragment potential method, using the test systems of (HCOOH)₂, HCONH₂ (formamide) crystal and BF₃·2H₂O crystal.     

Theoretical study of the polarized infrared spectra of the hydrogen bond in 2‐furoic acid crystal dimer

This work presents a theoretical simulation of ν_{O? H} and ν_{O? D} band shapes in the polarized infrared spectra of 2‐furoic acid dimer crystals measured at liquid‐nitrogen temperature. The line shapes are studied theoretically within the framework of the anharmonic couplings between low‐frequency hydrogen‐bond vibrations and degenerate excited states of high‐frequency hydrogen vibrations in hydrogen‐bonded dimers and the anharmonic coupling between the first excited state of the fast mode and the harmonics or band combinations of some low‐frequency bending modes, which lead to Fermi resonances.This approach takes into account the adiabatic approximation, the intrinsic anharmonicity of the low‐frequency mode through a Morse potential, Davydov coupling triggered by resonance exchange between the excited states of the fast modes of the two hydrogen bonds involved in the cyclic dimer, and the direct and indirect damping of the fast‐stretching modes of the hydrogen bonds and of the bending modes. The infrared spectral density was calculated within the linear response theory by Fourier transform of the autocorrelation function of the transition dipole moment operator of the fast mode. Numerical results show that mixing of all these effects allows satisfactory reproduction of the main features of the experimental IR line shapes of crystalline H‐ and D‐bonded 2‐furoic acid at liquid‐nitrogen temperature and for different polarizations. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2012     

The NMR study of hydrogen bond formation in some tris(((-salicylidene)amino)ethyl)amine derivatives in solution and in the solid state

Eight Schiff bases, derived from tris(2-aminoethyl)amine and some aromatic aldehydes have been investigated by heteronuclear NMR methods in solution and in the solid state. Six of those compounds can form intramolecular hydrogen bonds and two remaining imines which do not have hydroxyl substituent in position 2 cannot form such bonds and were chosen as a model compounds for nonbonded structure. The tautomeric equilibrium position of investigated compounds were estimated on the base of nitrogen chemical shifts and nitrogen-proton one bond coupling constants when available. In solution for each compound in all temperatures applied, single symmetrical dynamic averaged structures were found but in the solid state in a few cases mixtures of several nonequivalent or nonsymmetrical structures were observed. Generally at low temperature the –NH– form is more abundant then at room temperature. Similarly in the solid state the proton transfer from oxygen to nitrogen site is more effective in comparison with the solution, except for the 9-formyl-8-hydroxyjulolidine derivative for which different behavior was found.     

Proton tunnelling in the intramolecular hydrogen bond of 9-Hydroxyphenalenone

Inelastic neutron scattering spectra of the 9-hydroxyphenalenone and ring deuterated analogue reveal an intense band at 91 cm⁻¹ with all characteristics anticipated for a tunnelling the transition of a (quasi)symmetric double minimum potential for proton transfer along the intramolecular hydrogen bond. This frequency is compared to those previously reported for similar systems.     

Silver-Cobalt bimetallic nanoparticles to the generation of hydrogen from formic acid decomposition

The fabrication of cost effective heterogeneous catalysts for the release of hydrogen from hydrogen storage materials is the key technological challenge to the fuel-cell based hydrogen economy. Ag-Co bimetallic NPs were fabricated by using sodium dodecyl sulphate (SDS) and sodium borohydride as stabilizing and reducing agents, respectively. Catalytic activity of SDS-Ag-Co was higher than that of SDS free Ag-Co and monometallic (Ag and Co) due to the electron interactions and synergistic effect between the Ag and Co. Ag₁₀-Co₉₀ exhibited the superior catalytic activity, with rate constant of 5.2 × 10^?4 s^?1 at 303 K, activation energy of 46 kJ/mol, activation enthalpy of 44 kJ/mol, activation entropy of ?165 J/K/mol, and turn over frequency of 240 h^?1. The hydrogen generation rate increased and decreased with in increasing temperature, molar concentration of formic acid, presence of sodium formate, and pH, respectively. The kinetic rate equation can be stated as: rate = -d[formic acid]/dt = k_obs[formic acid]^0.99[Ag₅₀Co₅₀]^0.98, k_obs = 2.48 × 10⁷ exp (?5637.96/RT).     

Theoretical study of hydrogen bonded clusters of water and fulminic acid

Ab initio and density functional calculations are used to analyze the interaction between a molecule of fulminic acid with 1, 2, 3, and 4 molecules of water along with a 2:2 complex at B3LYP/6-31+G(d,p) and MP2/6-311++G(d,p) computational levels. Cooperative effect (CE) in terms of stabilization energy of clusters are calculated and discussed as well. CE is increased with increasing cluster size of studied clusters. Red shifts of H–C stretching frequency for complexes involving HCNO as H-donor are predicted.     

三维网状结构配位聚合物[Cu(HCOO)2(H2O)2]∞晶体的热分解机理

用水热合成法得到了[Cu(HCOO)2(H2O)2]∞的晶体, 采用TG-DTG和DSC法对配合物[Cu(HCOO)2(H2O)2]∞进行了热分解机理和热分解动力学研究. 通过对DSC曲线用Kissinger、Ozawa、积分法和微分法处理的结果进行比较, 得到了脱水过程的动力学模型函数. 并用X射线单晶衍射、元素分析、FTIR光谱技术进行了表征. 结果表明该配位聚合物晶体为单斜晶系, 属P21/c空间群, 晶胞参数为a=0.8533(2) nm, b=0.7151(2) nm, c=0.9463(2) nm, β=96.94(0)°. 晶胞体积V=0.5732(2) nm3, Z=4, 计算得到的晶体密度Dc=2.197 g•cm−3. 在该配位聚合物中, 通过甲酸根作为连接配体将两种铜配位中心连接起来形成三维网状框架结构.     

Synthesis and scintillating efficiencies of 2,5-diarylthiazoles with intramolecular hydrogen bond

A series of 2,5-diarylthiazole derivatives exhibiting an intramolecular hydrogen bond has been synthesized. The scintillation efficiency of each member of the series has been determined relative to 2,5-diphenyloxazole. Introduction of an OH group in ortho positions of 2,5-diphenyloxazole and 2,5-diphenylthiazole has led to a red shift of the fluorescence spectra due to intramolecular hydrogen bond, as supported by quantum chemical calculations.     

Potential energy surface of the (H2)2 dimer: an MP2 study

Fifteen structures of the (H₂)₂ dimer have been investigated at the MP2/[4s3p] level. The SCF and MP2 (2nd order Møller-Plesser treatment) interaction energies have been corrected for the basis set superposition error. Only the T-shaped structure has been established as a minimum on the potential energy surface. Two equivalent T-shaped structures are connected by a saddle point with a rhomboid structure.Dedicated to Professor J. Koutecký on the occasion of his 65th birthday     

Aluminum(III) triflate-catalyzed selective oxidation of glycerol to formic acid with hydrogen peroxide

Glycerol is a by-product of biodiesel production and is an important readily available platform chemical. Valorization of glycerol into value-added chemicals has gained immense attention. Herein, we carried out the conversion of glycerol to formic acid and glycolic acid using H₂O₂ as an oxidant and metal (III) triflate-based catalytic systems. Aluminum(III) triflate was found to be the most efficient catalyst for the selective oxidation of glycerol to formic acid. A correlation between the catalytic activity of the metal cations and their hydrolysis constants (K_h) and water exchange rate constants was observed. At 70 °C, a formic acid yield of up to 72% could be attained within 12 h. The catalyst could be recycled at least five times with a high conversion rate, and hence can also be used for the selective oxidation of other biomass platform molecules. Reaction kinetics and ¹H NMR studies showed that the oxidation of glycerol (to formic acid) involved glycerol hydrolysis pathways with glyceric acid and glycolic acid as the main intermediate products. Both the [Al(OH)_x]ⁿ⁺ Lewis acid species and CF₃SO₃H Brønsted acid, which were generated by the in-situ hydrolysis of Al(OTf)₃, were responsible for glycerol conversion. The easy availability, high efficiency, and good recyclability of Al(OTf)₃ render it suitable for the selective oxidation of glycerol to high value-added products.