HNNO_2自身氢迁移及异构化机理的理论研究

采用CBS-QB3方法对二硝酰胺酸(HDN)裂解过程中的HNNO2自由基自身氢迁移及N—N键断裂异构化反应机理进行了研究.结果表明,HNNO2自由基自身氢迁移反应经历了N(4)—O(2)间的氢迁移、O(2)—O(3)间的氢迁移及内转化3个不同类型的基元反应,最终生成N2O分子与OH自由基.其中N(4)—O(2)间的氢迁移为HNNO2自由基自身氢迁移反应中的速率决定步.HNNO2自由基通过N(1)—N(4)键断裂以及O(2)—N(4)键形成异构化成产物NO+HNO,该过程的能垒为176.17kJ·mol-1,比氢迁移通道决速步能垒高出了47.59kJ·mol-1,表明氢迁移通道为HNNO2裂解过程中的优势通道.     

含B-N相互作用偶氮苯强荧光材料光电性质的理论研究

本文基于增大光谱发光强度的结构修饰方法,采用理论计算方法研究了结构修饰后分子的电子性质、光谱性质以及电荷传输性质的变化.计算结果表明,-N(CH3)2取代、-N(CH3)2和-Br组合取代有助于吸收/发射光谱发光强度的提高.与母体分子相比,-N(CH3)2和-Br取代位置不同或取代数量不同可以引起最高占据分子轨道能量(EHOMO)、最低空分子轨道能量(ELUMO)和能隙(Eg=ELUMO-EHOMO)发生明显变化,从而有效调节了最大吸收波长(λabs)和最大发射波长(λem),从理论角度设计了一系列蓝光和绿光材料.重组能计算显示,除了GM-1和GM-6,其余分子可以作为有机电致发光材料(OLEDs)中的空穴传输材料,GM-1和GM-7可以作为双极性电荷传输材料.     

Theoretical study of the mechanism of nucleophilic substitution in cyclobutane derivatives

The mechanism of nucleophilic substitution in cyclobutane derivatives has been studied by means of ab initio molecular orbital computations on a model system. The results are in favour of a reaction which proceeds with inversion of configuration, in agreement with experimental data.     

Electric field-induced isomerization of azobenzene by STM

The electric field applied between the tip of a scanning tunneling microscope and a metallic surface is shown to induce the reversible trans-cis isomerization of single azobenzene derivatives adsorbed on a Au(111) surface. The investigated molecule is symmetrically equipped with four tert-butyl groups, which decouple the azobenzene core from the metallic surface, facilitating the formation of highly ordered islands. Due to the spatial extension of the electric field, it is possible to switch many molecules within the same island simultaneously.     

Theoretical study of isomerization and decomposition of propenal

We investigated the dynamics of isomerization and multi-channel dissociation of propenal (CH(2)CHCHO), methyl ketene (CH(3)CHCO), hydroxyl propadiene (CH(2)CH(2)CHOH), and hydroxyl cyclopropene (cyclic-C(3)H(3)-OH) in the ground potential-energy surface using quantum-chemical calculations. Optimized structures and vibrational frequencies of molecular species were computed with method B3LYP∕6-311G(d,p). Total energies of molecules at optimized structures were computed at the CCSD(T)∕6-311+G(3df,2p) level of theory. We established the potential-energy surface for decomposition to CH(2)CHCO + H, CH(2)CH + HCO, CH(2)CH(2)∕CH(3)CH + CO, CHCH∕CH(2)C + H(2)CO, CHCCHO∕CH(2)CCO + H(2), CHCH + CO + H(2), CH(3) + HCCO, CH(2)CCH + OH, and CH(2)CC∕cyclic-C(3)H(2) + H(2)O. Microcanonical rate coefficients of various reactions of trans-propenal with internal energies 148 and 182 kcal mol(-1) were calculated using Rice-Ramsperger-Kassel-Marcus and Variational transition state theories. Product branching ratios were derivable using numerical integration of kinetic master equations and the steady-state approximation. The concerted three-body dissociation of trans-propenal to fragments C(2)H(2) + CO + H(2) is the prevailing channel in present calculations. In contrast, C(3)H(3)O + H, C(2)H(3) + HCO and C(2)H(4) + CO were identified as major channels in the photolysis of trans-propenal. The discrepancy between calculations and experiments in product branching ratios indicates that the three major photodissociation channels occur mainly on an excited potential-energy surface whereas the other channels occur mainly on the ground potential-energy surface. This work provides profound insight in the mechanisms of isomerization and multichannel dissociation of the system C(3)H(4)O.     

类氮烯HNLiF构型和异构化反应理论研究

本文在量子化学从头算水平上, 用RHF/3-21G方法和梯度解析技术研究了类氮烯HNLiF势能面的主要特征, 得到三种平衡几何构型和两个异构化反应过渡态构型。平衡构型的能量按三元环构型、σ构型和p构型的顺序递增。三元环构型为类氮烯的主要存在形式。文中分析了各构型特点并给出其电荷分布和前线轨道。为用类氮烯合成含氮化合物提供了理论依据。     

Theoretical study on the mechanism of iron carbonyls mediated isomerization of allylic alcohols to saturated carbonyls

The conversion of allylic alcohols to enols mediated by Fe(CO)(3) has been studied through density functional theoretical calculations. From the results obtained a complete catalytic cycle has been proposed in which the first intermediate is the [(allyl alcohol)Fe(CO)(3)] complex. This intermediate evolves to the [(enol)Fe(CO)(3)] complex through two consecutive 1,3-hydrogen shifts involving a pi-allyl hydride intermediate. The highest Gibbs energy transition state corresponds to the partial decoordination ot the enol ligand prior to the coordination of a new allyl alcohol molecule that regenerates the first intermediate. Alternative processes for the [(enol)Fe(CO)(3)] complex such as [Fe(CO)(3)]-mediated enol-aldehyde transformation and enol isomerization have also been considered. The results obtained show that the former process is unfavourable, whereas the enol isomerization may compete with the enol decoordination step of the catalytic cycle.     

Theoretical study on the ring-opening isomerization reaction mechanism of the ring isomers of N8H8

Ring-opening isomerization from ring-shaped isomers to chain-shaped isomers of N(8)H(8) has been studied by a density function B3LYP method at 6-311+ +G** level. 20 ring-shaped isomers have been found to be able to transform into chain-shaped isomers, with 20 possible transition states got by ring-opening structure optimization. Furthermore, the ring-openings have been found in the longer N-N single bond by analyzing the length change of N-N bond of ring-shaped isomers in ring-opening processes. In addition, with the activation energies in ring-opening processes, the differences of the activation energies in isomerization between the isomers have been found according to the classification of rings. The activation energies in ring-opening isomerization of six-membered ring-shaped isomers are higher than that of the four-membered ring-shaped isomers. It indicates that six-membered ring-shaped isomers difficult in ring-opening in the isomerization are the steadiest ring-shaped isomers of N(8)H(8) while four-membered ring-shaped isomers easy in ring-opening are the most unstable.     

Theoretical studies on the isomerization mechanism of the ortho-green fluorescent protein chromophore

We present a systematic theoretical investigation on the overall ground state and excited-state isomerization reaction mechanism of ortho-green fluorescent protein chromophore (o-HBDI) using the density functional theory and the multireference methods. The calculated results and subsequent analysis suggest the possible isomerization mechanism for o-HBDI. By comparison with experimental observation and detailed analysis, it is concluded that as initiated by the excited-state intramolecular proton transfer reaction, the conical intersection between the ground state and the excited state along the C4-C5 single-bond rotational coordinate is responsible for the rapid deactivation of o-HBDI.     

Theoretical study on the isomerization and tautomerism in barbituric acid

Isomerization and tautomerism of 16 isomers of barbituric acid (BA) were studied at the MP2 and B3LYP levels of theory. Activation energies (E _a), imaginary frequencies (υ), and Gibbs free energies (ΔG ^#) of the amine-imine and keto-enol tautomerisms and O–H internal rotations were calculated. The activation energies of amine-imine tautomerisms were in the range of 110–200 kJ/mol and for keto-enol tautomerisms were larger than 200 kJ/mol. The calculated activation energies of internal O–H rotations were smaller than 60 kJ/mol. Effect of micro-hydration on the transition state structures and activation energies of the tautomerisms were also investigated. Water molecule catalyzed the tautomerisms and decreased the activation energies of both the amine-imine and keto-enol tautomerisms about 100–120 kJ/mol.     

Theoretical study of disubstituted pyrrolopyrimidines as focal adhesion kinase inhibitors

An in silico molecular modeling study of selected 7H‐pyrrolo[2,3‐d]pyrimidines with FAK inhibitory activities was performed. Rigid docking of each inhibitor at the FAK catalytic site was employed to obtain the most appropriate starting structures, followed by molecular mechanics‐based energy minimizations associated with molecular dynamics at the FAK binding site using the AMBER force field. Theoretical values of interaction energies obtained from the geometry optimization calculations for the protein‐inhibitor complexes were compared with published IC₅₀ values for FAK and showed a reasonable correlation. Based on these results and in view of the geometry of the most potent inhibitors, two new molecular structures were designed as possible FAK inhibitors and submitted to the same theoretical procedures. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

Theoretical study of the competitive decomposition and isomerization of 1-hexyl radical

The ground-state potential energy surface of the 1-hexyl system, including the main decomposition and isomerization processes, has been calculated with the MPW1K, BB1K, MPWB1K, MPW1B95, BMK, M05-2X and CBS-QB3 methods. On the basis of these data, thermal rate coefficients of different reaction channels and branching ratios were then calculated using the master equation formulation at 250–2,500 K. The results clearly point out that the 1,5 H atom transfer reaction of 1-hexyl radical with exothermicity proceeds through the lowest reaction barrier, whereas the decomposition processes are thermodynamically unfavorable with large endothermicity. The temperature effect is important on the relative importance of different reactions in the 1-hexyl system. In the low-temperature range of 250–900 K, isomerization reactions, especially 1,5 H atom transfer reaction of 1-hexyl radical, are dominating and responsible for over 82.17% of all the reactions, due to their smaller reaction barriers than those of the decomposition reactions. Furthermore, an equilibrium process involving the isomeric forms of the hexyl radicals appearing at relative low temperature was validated theoretically. However, isomerization and decomposition processes are kinetically competitive and simultaneously important under normal pyrolysis conditions.     

Ab initio study on the photochemical isomerization of furan derivatives

The photochemical isomerization reactions of furan, 2-methylfuran, 2-trimethylsilylfuran, and furan-2-carbonitrile were studied using ab initio methods. The results are in agreement with the previously reported data obtained through semiempirical methods. In particular, the sensitized irradiation of furan derivatives populates the first excited triplet state of the furan, and this triplet state can evolve only through O-Ca cleavage. The selection of the bond to be broken can depend on energetic factors (furan-2-carbonitrile) or on kinetic factors (2-methylfuran, 2-trimethylsilylfuran). The direct irradiation of furan derivatives populates the singlet excited state and leads to a conversion into the Dewar isomer or into the corresponding triplet state through the usual intersystem crossing procedure. The efficiency of these processes determines the presence or the absence of isomerized furan derivatives in the reaction mixtures.     

Synthesis and trans-cis isomerization of azobenzene dendrimers incorporating 1,2-isopropylidenefuranose rings

Azobenzene dendrimer 2 was synthesized from a known dendritic azo-tetracarboxylic acid and a dendritic amine incorporating 1,2-isopropylidenefuranose rings, and its trans-cis isomerization was studied by UV-vis absorption spectroscopy.     

Theoretical study on the mechanism of extraction reaction between silylene carbene and its derivatives and thiirane

The mechanism of the sulfur extraction reaction between singlet silylene carbine and its derivatives and thiirane has been investigated with density functional theory (DFT), including geometry optimization and vibrational analysis for the involved stationary points on the potential energy surface. The energies of the different conformations are calculated by B3LYP/6-311G(d, p) method. From the potential energy profile, it can be predicted that the reaction pathway of this kind consists in two steps: (1) the two reactants firstly form an intermediate through a barrier-free exothermic reaction; (2) the intermediate then isomerizes to a product via a transition state. This kind of reactions has similar mechanism: when the silylene carbene and its derivatives [X₂Si=C: (X = H, F, Cl, CH₃)] and thiirane approach each other, the shift of 3p lone electron pair of S in thiirane to the 2p unoccupied orbital of C in X₂Si=C: gives a p → p donor-acceptor bond, thereby leading to the formation of intermediate (INT). As the p → p donor-acceptor bond continues to strengthen (that is the C-S bond continues to shorten), the intermediate (INT) generates product (P + C₂H₄) via transition state (TS). It is the substituent electronegativity that mainly affect the extraction reactions. When the substituent electronegativity is greater, the energy barrier is lower, and the reaction rate is greater.     

Theoretical study of mechanism of extraction reaction between germylene carbene and its derivatives and thiirane

The mechanism of the sulfur extraction reaction between singlet germylene carbene and its derivatives [X₂Ge?C: (X = H, F, Cl, CH₃)] and thiirane has been investigated with density functional theory, including geometry optimization and vibrational analyses for the involved stationary points on the potential energy surface. The energies of the different conformations are calculated by B3LYP/6‐311G(d,p) method. From the potential energy profile, it can be predicted that the reaction pathway of this kind consists two steps: (1) the two reactants firstly form an intermediate (INT) through a barrier‐free exothermic reaction; (2) the INT then isomerizes to a product via a transition state (TS). This kind reaction has similar mechanism, when the germylene carbene and its derivatives [X₂Ge?C: (X = H, F, Cl, CH₃)] and thiirane get close to each other, the shift of 3p lone electron pair of S in thiirane to the 2p unoccupied orbital of C in X₂Ge = C: gives a p → p donor–acceptor bond, leading to the formation of INT. As the p → p donor–acceptor bond continues to strengthen (that is the C? S bond continues to shorten), the INT generates product (P + C₂H₄) via TS. It is the substituent electronegativity that mainly affects the extraction reactions. When the substituent electronegativity is greater, the energy barrier is lower, and the reaction rate is greater. © 2010 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

5-氟胞嘧啶气相及水助质子转移异构化的理论研究

采用密度泛函B3LYP/6-311G**方法,对6种5-氟胞嘧啶异构体孤立分子的稳定性及质子转移引起的酮式-烯醇式、氨基式-亚胺式互变异构反应机理进行了计算研究,获得了零点能、吉布斯自由能及质子转移过程的反应焓、活化能、活化吉布斯自由能和速率常数等参数.计算结果表明,气相中烯醇-氨基式FC4是最稳定的异构体.分子内质子转移设计了FC1→FC2和FC1→FC6两条通道,分别标记为P(1)和P(2),各通道速控步骤的活化能和速率常数分别为155.9 kJ·mol-1,4.70×10-15 s-1和173.1 kJ·mol-1,1.41×10-18 s-1.水助催化时,相应通道P(3) 和P(4) 速控步骤的活化能和速率常数分别为51.0 kJ·mol-1,1.41×103 s-1和88.2 kJ·mol-1,4.53×10-3 s-1.可见,水分子的加入极大地降低了质子转移的活化能垒.另外发现,水分子参与形成协同的双质子转移机理比水助单质子转移机理更利于降低活化能垒.