DNA三角双锥结构的放射性标记

分别采用点击化学方法对DNA三角双锥结构进行氟-18标记研究,采用二氯亚锡还原法对DNA三角双锥结构进行锝-99m标记研究.结果表明,点击化学方法不适用于DNA三角双锥结构的氟-18标记;而采用二氯亚锡还原法则制得了以DNA三角双锥结构为载体的分子影像探针99mTc-DBNs.     

Interfacially formed organized planar inorganic, polymeric and composite nanostructures

This paper discusses synthetic strategies for fabrication of new organized planar inorganic, polymeric, composite and bio-inorganic nanostructures by methods based on chemical reactions and physical interactions at the gas-liquid interface, Langmuir monolayer technique, interfacial ligand exchange and substitution reactions, self-assembling and self-organization processes, DNA templating and scaffolding. Stable reproducible planar assemblies of ligand-stabilized molecular nanoclusters containing definite number of atoms have been formed on solid substrate surfaces via preparation and deposition of mixed Langmuir monolayers composed by nanocluster and surfactant molecules. A novel approach to synthesis of inorganic nanoparticles and to formation of self-organized planar inorganic nanostructures has been introduced. In that approach, nanoparticles and nanostructures are fabricated via decomposition of insoluble metal-organic precursor compounds in a layer at the gas-liquid interface. The ultimately thin and anisotropic dynamic monomolecular reaction system was realized in that approach with quasi-two-dimensional growth and organization of nanoparticles and nanostructures in the plain of Langmuir monolayer. Photochemical and redox reactions were used to initiate processes of interfacial nucleation and growth of inorganic phase. It has been demonstrated that morphology of resulting inorganic nanostructures can be controlled efficiently by variations of growth conditions via changes in state and composition of interfacial planar reaction media, and by variations of composition of adjacent bulk phases. Planar arrays and chains of iron oxide and ultrasmall noble metal (Au and Pd) nanoparticles, nanowires and new organized planar disk, ring, net-like, labyrinth and very high-surface area nanostructures were obtained by methods based on that approach. Highly organized monomolecular polymeric films on solid substrates were obtained via deposition of Langmuir monolayer formed by water-insoluble amphiphilic polycation molecules. Corresponding nanoscale-ordered planar polymeric nanocomposite films with incorporated ligand-stabilized molecular metallic nanoclusters and interfacially grown nanoparticles were fabricated successfully. Novel planar DNA complexes with amphiphilic polycation monolayer were formed at the gas-aqueous phase interface and then deposited on solid substrates. Toroidal and new net-like conformations were discovered in those complexes. Nanoscale supramolecular organization of the complexes was dependent on cationic amphiphile monolayer state during the DNA binding. These monolayer and multilayer DNA/amphiphilic polycation complex Langmuir-Blodgett films were used as templates and nanoreactors for generation of inorganic nanostructures via metal cation binding with DNA and following inorganic phase growth reactions. As a result, ultrathin polymeric nanocomposite films with integrated DNA building blocks and organized inorganic semiconductor (CdS) and iron oxide quasi-linear nanostructures were formed. It has been demonstrated that interaction of deposited planar DNA/amphiphilic polycation complexes with bulk phase colloid inorganic cationic ligands (CdSe nano-rods) can result in formation of new highly organized hybrid bio-inorganic nanostructures via interfacial ligand exchange and self-organization processes. The methods developed can be useful for investigation of fundamental mechanisms of nanoscale structural organization and transformation processes in various inorganic and molecular systems including bio-molecular and bio-inorganic nanostructures. Also, those methods are relatively simple, environmentally safe and thus could prove to be efficient practical instruments of molecular nanotechnology with potential of design and cost-effective fabrication of new controlled-morphology organized planar inorganic and composite nanostructured materials. Possible applications of obtained nanostructures and future developments are also discussed.     

Information Coding in a Reconfigurable DNA Origami Domino Array

DNA nanostructures with programmable nanoscale patterns has been achieved in the past decades, and molecular information coding (MIC) on those designed nanostructures has gained increasing attention for information security. However, achieving steganography and cryptography synchronously on DNA nanostructures remains a challenge. Herein, we demonstrated MIC in a reconfigurable DNA origami domino array (DODA), which can reconfigure intrinsic patterns but keep the DODA outline the same for steganography. When a set of keys (DNA strands) are added, the cryptographic data can be translated into visible patterns within DODA. More complex cryptography with the ASCII code within a programmable 6×6 lattice is demonstrated to demosntrate the versatility of MIC in the DODA. Furthermore, an anti‐counterfeiting approach based on conformational transformation‐mediated toehold strand displacement reaction is designed to protect MIC from decoding and falsification.     

Self-assembled free-floating nanomaterials from sequence-defined polymers

Sequence-defined polymers can be programmed to self-assemble into precise nanostructures for applications in biosensing, drug delivery, optics, and molecular computation. Inspired by the natural self-assembly processes present in biological protein and DNA systems, sets of molecular design rules have emerged across materials classes as instructions to build a variety of tunable structures. This review highlights recent advances in self-assembled sequence-defined and sequence-specific polymers across peptides, peptoids, DNA, and non-biological synthetic materials, with a focus on synthesis, assembly processes and overall structure. Specifically, these self-assembled structures are free-floating, as such constructs can potentially serve as a platform for the aforementioned applications. Emphasis is placed on the molecular design of polymers that self-assemble into zero-dimensional, one-dimensional, two-dimensional, or three-dimensional nanostructures. With the development of automated syntheses and increasing control over self-assembly, future work may focus on emerging classes of compatible hybrid materials with exciting directions toward new architectures and applications.     

DNA‐Nanotechnologie

For the past two decades the extraordinary molecular recognition properties of DNA molecules have been used for the creation of artificial molecular structures. Following the initial production of simple molecular objects and lattices, with the recent invention of the DNA origami technique the complexity of these structures has considerably increased. Now the construction of almost arbitrary molecular nanostructures from DNA in two and even three dimensions is feasible – and first concrete applications in biomedicine and nanotechnology are in reach. In addition to static molecular structures, also dynamical systems such as molecular machines, molecular motors, and molecular computers can be realized. The combination of these functions within integrated systems currently leads to the development of first molecular “robots” and assembly lines for nanotechnology.     

基于DNA分子的纳米功能材料的设计、组装及应用

DNA除了作为一种遗传信息的载体分子之外,还可以通过折叠或组装从而形成特定的二维和三维结构。通过设计DNA分子的结构并探索其与纳米材料之间的相互作用的研究已经引起了国内外学术界的持续关注。DNA功能化的无机纳米材料促进了分析科学、生命科学以及环境科学的快速发展。本文将从疾病分子机制研究、疾病诊断和疾病治疗三个角度出发,探究面向生物医学分析应用的DNA分子功能化的无机纳米材料的设计与组装。除此之外,还对DNA功能化纳米材料技术的发展前景进行了展望。     

Directed Self‐Assembly of DNA Tiles into Complex Nanocages

Tile‐based self‐assembly is a powerful method in DNA nanotechnology and has produced a wide range of well‐defined nanostructures. But the resulting structures are relatively simple. Increasing the structural complexity and the scope of the accessible structures is an outstanding challenge in molecular self‐assembly. A strategy to partially address this problem by introducing flexibility into assembling DNA tiles and employing directing agents to control the self‐assembly process is presented. To demonstrate this strategy, a range of DNA nanocages have been rationally designed and constructed. Many of them can not be assembled otherwise. All of the resulting structures have been thoroughly characterized by gel electrophoresis and cryogenic electron microscopy. This strategy greatly expands the scope of accessible DNA nanostructures and would facilitate technological applications such as nanoguest encapsulation, drug delivery, and nanoparticle organization.     

Kinetically grafting G-quadruplexes onto DNA nanostructures for structure and function encoding via a DNA machine

Kinetically grafting G-quadruplexes onto one-dimensional DNA nanostructures with precise positioning was realized in this study. The programs hold great promise for label-free and enzyme-free detection of various targets as a result of signal amplification from G-quadruplexes, and building DNA nanostructures as scaffolds due to the molecular recognition capacity of G-quadruplex aptamers.     

Block Copolymer Micellization as a Protection Strategy for DNA Origami

DNA nanotechnology enables the synthesis of nanometer‐sized objects that can be site‐specifically functionalized with a large variety of materials. For these reasons, DNA‐based devices such as DNA origami are being considered for applications in molecular biology and nanomedicine. However, many DNA structures need a higher ionic strength than that of common cell culture buffers or bodily fluids to maintain their integrity and can be degraded quickly by nucleases. To overcome these deficiencies, we coated several different DNA origami structures with a cationic poly(ethylene glycol)–polylysine block copolymer, which electrostatically covered the DNA nanostructures to form DNA origami polyplex micelles (DOPMs). This straightforward, cost‐effective, and robust route to protect DNA‐based structures could therefore enable applications in biology and nanomedicine where unprotected DNA origami would be degraded.     

Surface‐Assisted Large‐Scale Ordering of DNA Origami Tiles

The arrangement of DNA‐based nanostructures into extended higher order assemblies is an important step towards their utilization as functional molecular materials. We herein demonstrate that by electrostatically controlling the adhesion and mobility of DNA origami structures on mica surfaces by the simple addition of monovalent cations, large ordered 2D arrays of origami tiles can be generated. The lattices can be formed either by close‐packing of symmetric, non‐interacting DNA origami structures, or by utilizing blunt‐end stacking interactions between the origami units. The resulting crystalline lattices can be readily utilized as templates for the ordered arrangement of proteins.     

Nucleic Acid-based Enzyme Cascades—Current Trends and Future Perspectives

The natural micro- and nanoscale organization of biomacromolecules is a remarkable principle within living cells, allowing for the control of cellular functions by compartmentalization, dimensional diffusion and substrate channeling. In order to explore these biological mechanisms and harness their potential for applications such as sensing and catalysis, molecular scaffolding has emerged as a promising approach. In the case of synthetic enzyme cascades, developments in DNA nanotechnology have produced particularly powerful scaffolds whose addressability can be programmed with nanometer precision. In this minireview, we summarize recent developments in the field of biomimetic multicatalytic cascade reactions organized on DNA nanostructures. We emphasize the impact of the underlying design principles like DNA origami, efficient strategies for enzyme immobilization, as well as the importance of experimental design parameters and theoretical modeling. We show how DNA nanostructures have enabled a better understanding of diffusion and compartmentalization effects at the nanometer length scale, and discuss the challenges and future potential for commercial applications.     

3D Framework DNA Origami with Layered Crossovers

Designer DNA architectures with nanoscale geometric controls provide a programmable molecular toolbox for engineering complex nanodevices. Scaffolded DNA origami has dramatically improved our ability to design and construct DNA nanostructures with finite size and spatial addressability. Here we report a novel design strategy to engineer multilayered wireframe DNA structures by introducing crossover pairs that connect neighboring layers of DNA double helices. These layered crossovers (LX) allow the scaffold or helper strands to travel through different layers and can control the relative orientation of DNA helices in neighboring layers. Using this design strategy, we successfully constructed four versions of two‐layer parallelogram structures with well‐defined interlayer angles, a three‐layer structure with triangular cavities, and a 9‐ and 15‐layer square lattices. This strategy provides a general route to engineer 3D framework DNA nanostructures with controlled cavities and opportunities to design host–guest networks analogs to those produced with metal organic frameworks.     

Single‐Particle Tracking and Modulation of Cell Entry Pathways of a Tetrahedral DNA Nanostructure in Live Cells

DNA is typically impermeable to the plasma membrane due to its polyanionic nature. Interestingly, several different DNA nanostructures can be readily taken up by cells in the absence of transfection agents, which suggests new opportunities for constructing intelligent cargo delivery systems from these biocompatible, nonviral DNA nanocarriers. However, the underlying mechanism of entry of the DNA nanostructures into the cells remains unknown. Herein, we investigated the endocytotic internalization and subsequent transport of tetrahedral DNA nanostructures (TDNs) by mammalian cells through single‐particle tracking. We found that the TDNs were rapidly internalized by a caveolin‐dependent pathway. After endocytosis, the TDNs were transported to the lysosomes in a highly ordered, microtubule‐dependent manner. Although the TDNs retained their structural integrity within cells over long time periods, their localization in the lysosomes precludes their use as effective delivery agents. To modulate the cellular fate of the TDNs, we functionalized them with nuclear localization signals that directed their escape from the lysosomes and entry into the cellular nuclei. This study improves our understanding of the entry into cells and transport pathways of DNA nanostructures, and the results can be used as a basis for designing DNA‐nanostructure‐based drug delivery nanocarriers for targeted therapy.     

Radiolabeling of DNA nanostructure with 99mTc using DTPA as a chelate

In the field of nanotechnology, DNA-based nanoscale materials have facilitated the construction of DNA polyhedrons with different shapes and sizes by using predictable base pairing and highly tunable conformation. In this study DNA bipyramid nanostructures with one arm chain (T20-DBNs) were successfully prepared in a single annealing procedure. ^99mTc-A20 ssDNA was obtained by radiolabeled DTPA-A20 with ^99mTc, and then ^99mTc-DTPA-DBNs were obtained by hybridizing T20-DBNs with ^99mTc-A20 ssDNA. We focused on studying a method of ^99mTc radiolabeling DNA nanostructures with DTPA as a chelate, and hoped to develop a new SPECT molecular imaging probe based on DNA nanostructures.

     

In Vitro Selection of pH‐Activated DNA Nanostructures

We report the first in vitro selection of DNA nanostructures that switch their conformation when triggered by change in pH. Previously, most pH‐active nanostructures were designed using known pH‐active motifs, such as the i‐motif or the triplex structure. In contrast, we performed de novo selections starting from a random library and generated nanostructures that can sequester and release Mipomersen, a clinically approved antisense DNA drug, in response to pH change. We demonstrate extraordinary pH‐selectivity, releasing up to 714‐fold more Mipomersen at pH 5.2 compared to pH 7.5. Interestingly, none of our nanostructures showed significant sequence similarity to known pH‐sensitive motifs, suggesting that they may operate via novel structure‐switching mechanisms. We believe our selection scheme is general and could be adopted for generating DNA nanostructures for many applications including drug delivery, sensors and pH‐active surfaces.     

Molecular engineering of photoresponsive three-dimensional DNA nanostructures

This study demonstrates the use of azobenzene-incorporated DNA as a control agent to precisely monitor three-dimensional DNA nanostructures. The shape of a DNA tetrahedron can be controlled by alternate irradiations with different wavelengths of light.     

Hybrid Soft Nanomaterials Composed of DNA Microspheres and Supramolecular Nanostructures of Semi-artificial Glycopeptides

Aqueous hybrid soft nanomaterials consisting of plural supramolecular architectures with a high degree of segregation (orthogonal coexistence) and precise hierarchy at the nano- and microscales, which are reminiscent of complex biomolecular systems, have attracted increasing attention. Remarkable progress has been witnessed in the construction of DNA nanostructures obtained by rational sequence design and supramolecular nanostructures of peptide derivatives through self-assembly under aqueous conditions. However, orthogonal self-assembly of DNA nanostructures and supramolecular nanostructures of peptide derivatives in a single medium has not yet been explored in detail. In this study, DNA microspheres, which can be obtained from three single-stranded DNAs, and three different supramolecular nanostructures (helical nanofibers, straight nanoribbons, and flowerlike microaggregates) of semi-artificial glycopeptides were simultaneously constructed in a single medium by a simple thermal annealing process, which gives rise to hybrid soft nanomaterials. Fluorescence imaging with selective staining of each supramolecular nanostructure uncovered the orthogonal coexistence of these structures with only marginal impact on their morphology. Additionally, the biostimuli-responsive degradation propensity of each supramolecular architecture is retained, and this may allow the construction of active soft nanomaterials exhibiting intelligent biofunctions.     

The assemble,grow and lift-off (AGLO) strategy to construct complex gold nanostructures with pre-designed morphologies

The construction of metallic nanostructures with customizable morphologies and complex shapes has been an essential pursuit in nanoscience. DNA nanotechnology has enabled the fabrication of increasingly complex DNA nanostructures with unprecedented specificity, programmability and sub-nanometer precision, which makes it an ideal approach to rationally organize metallic nanostructures. Here we report an Assemble, Grow and Lift-Off (AGLO) strategy to construct robust standalone gold nanostructures with pre-designed customizable shapes in solution, using only a simple 2D DNA origami sheet as a versatile transient template. Gold nanoparticle (AuNP) seeds were firstly assembled onto the pre-designed binding sites of the DNA origami template and then additional gold was slowly deposited onto the AuNP seeds. The growing seed surfaces eventually merge with adjacent seeds to generate one continuous gold nanostructure in a pre-designed shape, which can then be lifted off the origami template. Diverse customized patterns of templated AuNP seeds were successfully transformed into corresponding gold nanostructures with the target structure transformation percentage over 80%. Moreover, the AGLO strategy can be incorporated with a magnetic bead separation platform to enable the easy recycling of the excess AuNP seeds and DNA components.

The AGLO strategy generates complex gold nanostructures with user-designed morphologies in solution, using only a simple 2D DNA origami sheet as a versatile transient template. The products are robust and stable as standalone gold nanostructures.     

Metal-complex/DNA conjugates: a versatile building block for DNA nanoarrays

The use of DNA networks as templates for forming nanoarrays of metallic centres shows an exciting potential to generate addressable nanostructures. Inorganic units can be photoactive, electroactive and/or can possess magnetic and catalytic properties and can adopt different spatial arrangements due to their varied coordination nature. All these properties influence both the structure and function of passive DNA scaffolds and provide DNA nanostructures as a new platform for new materials in emerging technologies, such as nanotechnology, biosensing or biocomputing.     

Self-assembly of 1-D organic semiconductor nanostructures

This review focuses on the molecular design and self-assembly of a new class of crowded aromatics that form 1-D nanostructures via hydrogen bonding and pi-pi interactions. These molecules have a permanent dipole moment that sums as the subunits self assemble into molecular stacks. The assembly of these molecular stacks can be directed with electric fields. Depending on the nature of the side-chains, molecules can obtain the face-on or edge-on orientation upon the deposition onto a surface via spin cast technique. Site-selective steady state fluorescence, time-resolved fluorescence, and various types of scanning probe microscopy measurements detail the intermolecular interactions that drive the aromatic molecules to self-assemble in solution to form well-ordered columnar stacks. These nanostructures, formed in solution, vary in their number, size, and structure depending on the functional groups, solvent, and concentration used. Thus, the substituents/side-groups and the proper choice of the solvent can be used to tune the intermolecular interactions. The 1-D stacks and their aggregates can be easily transferred by solution casting, thus allowing a simple preparation of molecular nanostructures on different surfaces.