A study of metal chelation of dinucleotide analogs in the gas phase by fast-atom bombardment mass spectrometry

Fast-atom bombardment (FAB) mass spectrometry was used to investigate the interaction of proton and alkali metal ions with dinucleotide analogs such as T-n-T (T = thymine moiety, n = polyether chain, e.g., triethylene, tetraethylene, pentaethylene, and hexaethylene ether 1–4), A-n-T (A = adenine unit 5–8), and T-n-OMe (9–12) in 3-nitrobenzyl alcohol matrix. The [M + H]⁺ ion is the most abundant ion for the A-n-T series, whereas in 1–4 and 9–12 the (TC₂H₄)⁺ ion is the most abundant. Formation of [M + H -C₂H₄O]⁺ ions, a characteristic fragmentation of crown ethers under electron ionization, is observed for compounds 1–12 and is more pronounced in 6 and 7. An abundant [M ? H]^? ion is observed for all the compounds studied under negative ion FAB due to the presence of the (-CO-NH-CO-) group of thymine, an indication of existence of intramolecular H bonding. The FAB mass spectra of 1–12 with alkali metal ions (Li⁺, Na⁺, K⁺, Rb⁺, and Cs⁺) showed formation of abundant metal-coordinated ions ([M + Met]⁺ and [TC₂H₄ + Met]⁺). Compounds 3, 4, 6, 7, and 10–12 showed ions due to the substitution of the thymine moiety by a hydroxyl group ([M + Met ? 108]⁺, Met = metal ion). For compound 3 alone, substitution of two thymine groups ([M + Met - 216]⁺) was observed. Metastable ion studies were used to elucidate the structures of these potentially significant ions, and the ion formule were confirmed with high resolution measurements. Selectivity toward metal complexation with ligand size was seen in the T-n-T and A-n-T series and was even more pronounced in A-n-T series. These dinucleotide analogs fall in the following order of chelation of alkali metal ions, acyclic glymes < dinucleotide analogs (acyclic glymes substituted with nitrogen bases) < crown ethers, which places them in perspective as receptor models.     

Determination of orders of relative alkali metal ion affinities of crown ethers and acyclic analogs by the kinetic method

Ladders of relative alkali ion affinities of crown ethers and acyclic analogs were constructed by using the kinetic method. The adducts consisting of two different ethers bound by an alkali metal ion, (M₁ + Cat + M₂)⁺, were formed by using fast atom bombardment ionization to desorb the crown ethers and alkali metal ions, then collisionally activated to induce dissociation to (M₁ + Cat)⁺ and (M₂ + Cat)⁺ ions. Based on the relative abundances of the cationized ethers formed, orders of relative alkali ion affinities were assigned. The crown ethers showed higher affinities for specific sizes of metal ions, and this was attributed in part to the optimal spatial fit concept. Size selectivities were more pronounced for the smaller alkali metal ions such as Li⁺, Na⁺, and K⁺ than the larger ions such as Cs⁺ and Rb⁺. In general, the cyclic ethers exhibited greater alkali metal ion affinities than the corresponding acyclic analogs, although these effects were less dramatic as the size of the alkali metal ion increased.     

Collision-induced dissociation of glycoside–alkali metal adduct ions in fast atom bombardment mass spectrometry

The collision-induced dissociation (CID) spectra of glycoside–alkali metal adduct ions [M + C]⁺ (C = Li, Na, K and Rb) produced under fast atom bombardment (FAB) conditions are reported. The results obtained suggested that the CID spectra of the [M + C]⁺ ions of some flavonoid glycosides reflect the coordination structures because the CID patterns generally changed with the metal cation size. In diglycosides, the CID spectra showed that the relatively small cations Li⁺ and Na⁺ rather bind to the sugar moiety, whereas the large cations K⁺ and Rb⁺ rather bind to the aglycone moiety. In monoglycosides, the cations C⁺ rather bind to the aglycone moiety. It was concluded that the CID technique combined with FAB is useful for the structural elucidation of [M + C]⁺ ions and, in principle, the CID spectra reflect the coordination structures in the gas phase.     

Selective reagents in chemical ionization mass spectrometry: Tetramethylsilane with ethers

Chemical ionization mass spectra of several ethers obtained with He/(CH₃)₄Si mixtures as the reagent gases contain abundant [M + 73]⁺ adduct ions which identify the relative molecular mass. For the di-n-alkyl ethers, these [M + 73]⁺ ions are formed by sample ion/sample molecule reactions of the fragment ions, [M + 73 ? C_nH_2n]⁺ and [M + 73 ? 2CnH_2n]⁺. Small amounts of [M + H]⁺ ions are also formed, predominantly by proton transfer reactions of the [M + 73 ? 2CnH_2n]⁺ or [(CH₃)₃SiOH₂]⁺ ions with the ethers. The di-s-alkyl ethers give no [M + 73] ⁺ ions, but do give [M + H]⁺ ions, which allow the determination of the relative molecular mass. These [M + H]⁺ ions result primarily from proton transfer reactions from the dominant fragment ion, [(CH₃)₃SiOH₂]⁺ with the ether. Methyl phenyl ether gives only [M + 73]⁺ adduct ions, by a bimolecular addition of the trimethylsilyl ion to the ether, not by the two-step process found for the di-n-alkyl ethers. Ethyl phenyl ether gives [M + 73]⁺ by both the two-step process and the bimolecular addition. Although the mass spectra of the alkyl etherr are temperature-dependent, the sensitivities of the di-alkyl ethers and ethyl phenyl ether are independent of temperature. However, the sensitivity for methyl phenyl ether decreases significantly with increasing temperature.     

Cation exchange properties of crown ether-phosphotungstic acid precipitates

Precipitate formation between phosphotungstic acid and crown ethers is a general phenomenon, producing solids with selective ion exchange behavior for the alkali metal ions. Distribution coefficients for Li⁺, Na⁺, K⁺, and Cs⁺ were measured for a series of these precipitates with different crown ethers. The sorption data are more complicated than for the corresponding phosphomolybdates and indicate a variability in the number of exchangeable sites with H⁺ and M⁺ concentration. The crown ether used markedly affects the cation selectivity of the phosphotungstate precipitates.     

Thermal desorption of quasimolecular ions

The thermal desorption of [M + Alkali]⁺ quasimolecular ions from a heated metal surface is reported for some alkali salts of carboxylic acids and mixtures of alkali halides with a crown ether, glucose and adenosine. No quasimolecular ion could be detected from sucrose. With benzo[15]crown-5 the desorption of [M + Na]⁺ ions takes place even below the threshold temperature for thermionic emission of alkali ions. In addition, the desorption of intact [B(C₆H₅)₄]^? ions from a layer of NaB(C₆H₅)₄ is reported.     

Selective complexation of alkali metal ions using crown ethers derived from calix[4]arenes: a computational investigation of the structural and energetic factors

A systematic analysis of the structural, energetic, and thermodynamic factors involved in alkali metal (i.e., Na⁺, K⁺, Rb⁺, and Cs⁺) complexation by four calix[4]arene crown-6 ethers in the 1,3-alternate conformation is presented here. The ligands (or hosts) in this work are identical to, or closely related to, the four molecules whose selectivity towards complexing Na⁺, K⁺, Rb⁺, and Cs⁺ from aqueous solutions was studied experimentally by Casnati et al. (Tetrahedron 60(36):7869–7876, 2004). By dividing the complexation process into three different contributions, namely, the binding energy of the ion to the crown, the elastic energy of the crown, and the solvation effect, it becomes clear that the primary factor that determines ion selectivity in crown-6-ethers is not the size of the crown, as currently believed. All four crown ethers preferentially complex with the smallest ion (Na⁺) in the gas phase. In the condensed phase, these crown-6 ethers preferentially complex with the larger ions only because the aqueous solvation energies of the alkali metal ions make it thermodynamically less favorable to extract the smaller ions from aqueous solutions. This suggests that the current understanding of the factors influencing the selectivity of metal ion complexation by crown ethers may be in need of revision.     

Highly Selective Lithium Transport through Crown Ether Pillared Angstrom Channels

Biological ion channels use the synergistic effects of various strategies to realize highly selective ion sieving. For example, potassium channels use functional groups and angstrom-sized pores to discriminate rival ions and enrich target ions. Inspired by this, we constructed a layered crystal pillared by crown ether that incorporates these strategies to realize high Li⁺ selectivity. The pillared channels and crown ether have an angstrom-scale size. The crown ether specifically allows the low-barrier transport of Li⁺. The channels attract and enrich Li⁺ ions by up to orders of magnitude. As a result, our material sieves Li⁺ out of various common ions such as Na⁺, K⁺, Ca²⁺, Mg²⁺ and Al³⁺. Moreover, by spontaneously enriching Li⁺ ions, it realizes an effective Li⁺/Na⁺ selectivity of 1422 in artificial seawater where the Li⁺ concentration is merely 25 μM. We expect this work to spark technologies for the extraction of lithium and other dilute metal ions.     

Structural determination of oxofatty acids by charge-remote fragmentations

A strategy is described to locate the carbonyl position in oxofatty acids by utilizing charge-remote fragmentations of various molecular ions that are desorbed by fast atom bombardment (FAB). Oxofatty acids were cationized with alkali metal ions (Li⁺, Na⁺, K⁺, Rb⁺, and Cs⁺) to form [M+2Met?H]⁺ or alkaline earth metal ions (Mg²⁺, Ca²⁺, Sr²⁺ or Ba²⁺) to form [M+Met?H]⁺ in the gas phase. The cationized acids undergo charge-remote fragmentations upon high-energy activation, giving a product-ion pattern that has a gap corresponding to the oxo position and bordered by two high-intensity peaks. One of the peaks corresponds to an ion that is formed by the cleavage of the C-C bond β to the oxo position and proximal to the charge (β ion), whereas the other is formed from the cleavage of the C-C bond γ to the oxo position and distal to the charge (γ′ ion). The oxo position is easily determined by identifying the gap and the β and γ′ ions. Furthermore, there are two competing patterns of fragments in a CAD spectrum of an oxofatty acid or ester [M+Li]⁺ ion. These arise because Li⁺ attaches to either the oxo or the carboxylic end, as was confirmed by ab initio molecular orbital calculations. The results demonstrate that control of the fragmentation can be guided by an understanding of metal-ion affinities. Collisional activation of the anionic carboxylates gives results that are similar to those for positive ions, showing that the process is not related to the charge status. Collisional activation of [M+H]⁺ ions does not give structural information because the charge migrates, leading to charge-mediated fragmentations.     

Formation and fragmentation of the [M + Na]+ ion of glycosides in fast atom bombardment mass spectrometry

Positive-ion fast atom bombardment (FAB) mass spectra of flavonol and steroid glycosides with sodium chloride added showed well known characteristic features; of the appearance of [M + Na]⁺ peaks, disappearance of [M + H]⁺ peaks and a significant decrease in the peak heights of fragment ions. Compared with the features in the FAB mass spectra of crown ethers with addition of salt, and above features suggest a complexation between Na⁺ and the glycosides in matrix solution. The B/E-constant linked scanning technique was used to obtain structural information of the [M + Na]⁺ ion of the glycosides. The B/E spectra gave the daughter-ion peaks, suggesting that coordination of Na⁺ with the biosides and triosides occurs at the sugar moiety, whereas the coordination with the monoglycosides occurs at the aglycone moiety, except for monoglycosides in which the aglycone moiety does not contain significant oxygen functional groups such as OH and CO.     

Synthetic, structural, and theoretical investigations of alkali metal germanium hydrides--contact molecules and separated ions

The preparation of a series of crown ether ligated alkali metal (M=K, Rb, Cs) germyl derivatives M(crown ether)_nGeH₃ through the hydrolysis of the respective tris(trimethylsilyl)germanides is reported. Depending on the alkali metal and the crown ether diameter, the hydrides display either contact molecules or separated ions in the solid state, providing a unique structural insight into the geometry of the obscure GeH₃^? ion. Germyl derivatives displaying M? Ge bonds in the solid state are of the general formula [M([18]crown‐6)(thf)GeH₃] with M=K ( 1 ) and M=Rb ( 4 ). The compounds display an unexpected geometry with two of the GeH₃ hydrogen atoms closely approaching the metal center, resulting in a partially inverted structure. Interestingly, the lone pair at germanium is not pointed towards the alkali metal, rather two of the three hydrides are approaching the alkali metal center to display M? H interactions. Separated ions display alkali metal cations bound to two crown ethers in a sandwich‐type arrangement and non‐coordinated GeH₃^? ions to afford complexes of the type [M(crown ether)₂][GeH₃] with M=K, crown ether=[15]crown‐5 ( 2 ); M=K, crown ether=[12]crown‐4 ( 3 ); and M=Cs, crown ether=[18]crown‐6 ( 5 ). The highly reactive germyl derivatives were characterized by using X‐ray crystallography, ¹H and ¹³C NMR, and IR spectroscopy. Density functional theory (DFT) and second‐order Møller–Plesset perturbation theory (MP2) calculations were performed to analyze the geometry of the GeH₃^? ion in the contact molecules 1 and 4 .     

Evidence that gas-phase ion-molecule reactions are responsible for the behaviour of crown ethers under fast atom bombardment conditions

The fast atom bombardment mass spectrometry of some crown ethers shows the formation of both [M + H]⁺ and [M ? H]⁺ ions, paralleling behaviour already observed using electron impact ionization. The study of these oily samples with and without a glycerol matrix, trifluoroacetic acid or alkali metal salts, suggests that the ionization process does not occur in the condensed phase, but in the selvedge region by gas-phase ion-molecule reactions in accordance with the ‘gas-phase explosion model’. Positive-ion chemical ionization experiments support this proposal.     

Study of Host-Guest Complexation of Alkaline Earth Metal Ion,Aluminum Ion and Transition Metal Ions with Crown Ethers by Fast Atom Bombardment Mass Spectrometry

Complexations of crown ethers with alkali metal ions have been investigated extensively by FAB mass spectrometry over the past decade, but very little attention has been paid to reactions of crown ethers with other classes of metal ions such as alkaline earth metal ions, transition metal ions and aluminum ions. Although fast atom bombardment ionization mass spectrometry has proven to be a rapid and convenient method to determine the binding interactions of crown ethers with metal ions, problems in reliabilities for quantitative measurements of” binding strength for the host-guest complexes have been described in the literature. Thus, in this paper, applications of FAB/MS for investigating the complexation of crown ethers with various classes of metal ions is discussed. Extensive fragmentations for neutral losses such as C₂H₄O or C₂H₄ molecules from the host-guest complexes could be observed. The reason is attributed to the energetic bombardment processes of FAB occuring in the formation of these complexes. Complexes of cyclen with metal ions also show neutral losses of C₂H₄NH molecules leading to fragment ions. Transition metal ions usually form (Crown + MCl)⁺ type of ions, alkaline earth metal ions can form both (Crown + MCl)⁺ and (Crown + MOH)⁺ type of ions. But for aluminum ions, only (Crown + Al(OH)₂)⁺ type of ions could he observed.     

Mass spectrometric investigation of the side-arm lariat effect of ortho- and para-methoxyphenoxymethyl-15-crown-5 in the gas phase

Mixtures of unsubstituted 15-crown-5 and its analogues containing ortho- and para-methoxyphenoxymethyl substituents with sodium salts were investigated by matrix assisted laser desorption/ionization (MALDI) mass spectrometry. Peaks of cationized molecules [M+Na]⁺ and cluster ions [2M+2Na+An]⁺, where M is the crown ether molecule and An is monobasic acid anion, were observed in the mass spectra. It was shown that an increase of the shielding degree of the sodium cation in complexes with crown ethers, i.e., the lariat effect, led to a significant decrease in the intensity of peaks of the cluster ions.     

Ion-molecule reactions of oxygenated chemical ionization reagents with vincamine

The ion-molecule reactions of ions from acetone, dimethyl ether, 2-methoxyethanol, and vinyl methyl ether with vincamine were investigated. Reactions with dimethyl ether result in [M+13]⁺ and [M+45]⁺ products, reactions with 2-methoxyethanol produce [M+13]⁺ and [M+89]⁺ ions, and reactions with acetone or vinyl methyl ether ions generate predominantly [M+43]⁺ ions. Collision-activated dissociation and deuterium labeling experiments allowed speculation about the product structures and mechanisms of dissociation. The methylene substitution process was shown to occur at the hydroxyl oxygen and the phenyl ring of vincamine for dimethyl ether reactions, but the methylene substitution process was not favored at the hydroxyl oxygen for the 2-methoxyethanol reactions, instead favored at the 12 phenyl position. The reaction site is likely different for the 2-methoxyethanol ion due to its capability for secondary hydrogen-bonding interactions. For the [M+45]⁺ and [M+89]⁺ ions, evidence suggests that charge-remote fragmentation processes occur from these products. In general, the use of dimethyl ether ions or 2-methoxyethanol ions for ionmolecule reactions prove highly diagnostic for the characterization of vincamine; both molecular weight and structural information are obtained. Limits of detection for vincamine with dimethyl ether chemical ionization via this technique on a benchtop ion trap gas chromatography-tandem mass spectrometer are in the upper parts per trillion range.     

Ion-molecule reactions observed for nitroaromatic compounds in negative ion fast atom bombardment mass spectrometry

Analyses of a series of nitroaromatic compounds using fast atom bombardment (FAB) mass spectrometry are discussed. An interesting ion-molecule reaction leading to [M + O ? H]^? ions is observed in the negative ion FAB spectra. Evidence from linked-scan and collision-induced dissociation spectra proved that [M + O ? H]^? ions are produced by the following reaction: M + NO₂^? → [M + NO₂]^? → [M + O ? H]^?. These experiments also showed that M^?˙ ions are produced in part by the exchange of an electron between M and NO₂^? species. All samples showed M^?˙, [M ? H]^? or both ions in their negative ion FAB spectra. Not all analytes studied showed either [M + H]⁺ and/or M⁺˙ in the positive ion FAB spectra. No M⁺˙ ions were observed for ions having ionization energies above ～9 eV.     

Density Functional Theory Study of Selectivity of Crown Ethers to Li+ in Spent Lithium-Ion Batteries Leaching Solutions

It is a challenge to recover lithium from the leaching solution of spent lithium-ion batteries, and crown ethers are potential extractants due to their selectivity to alkali metal ions. The theoretical calculations for the selectivity of crown ethers with different structures to Li ions in aqueous solutions were carried out based on the density functional theory. The calculated results of geometries, binding energies, and thermodynamic parameters show that 15C5 has the strongest selectivity to Li ions in the three crown ethers of 12C4, 15C5, and 18C6. B15C5 has a smaller binding energy but more negative free energy than 15C5 when combined with Li⁺, leading to that the lithium ions in aqueous solutions will combine with B15C5 rather than 15C5. The exchange reactions between B15C5 and hydrated Li⁺, Co²⁺, and Ni²⁺ were analyzed and the results show that B15C5 is more likely to capture Li⁺ from the hydrated ions in an aqueous solution containing Li⁺, Co²⁺, and Ni²⁺. This study indicates that it is feasible to extract Li ions selectively using B15C5 as an extractant from the leaching solution of spent lithium-ion batteries.     

Functional group-selective ion-molecule reactions of ethylene glycol and its monomethyl and dimethyl ethers

The selective methylation and methylene substitution reactions of dimethyl ether ions with ethylene glycol, ethylene glycol monomethyl ether, and ethylene glycol dimethyl ether were investigated in a quadrupole ion trap mass spectrometer. Whereas the reactions of ethylene glycol and ethylene glycol monomethyl ether with the methoxymethylene cation 45⁺ gave only [M + 13]⁺ product ions, the reaction of ethylene glycol dimethyl ether with the same reagent ion yielded exclusively [M + 15]⁺ ions. The relative rates of formation of these products and those from competing reactions were examined and rationalized on the basis of structural and electronic considerations. The heats of formation for various relevant species were estimated by computational methods and showed that the reactions leading to the [M + 13]⁺ ions were more energetically favorable than those leading to the [M + 15]⁺ products for cases in which both reactions are possible. Finally, the collision-induced dissociation behavior of the [M + H]⁺, [M + 13]⁺, and [M + 15]⁺ ions indicated that the and [M + H]⁺ rons dissociated by analogous pathways and were thus structurally similar, whereas the [M + 13]⁺ ions possessed distinctly different structural characteristics.     

Adsorption of polymers with crown ether substituents on muscovite mica

Ultrahigh specific surface area muscovite with different ions at the surface (Li⁺, Na⁺, K⁺, Rb⁺, Cs⁺, Ca²⁺, Sr²⁺, Ba²⁺, Cu²⁺) was treated with aqueous solutions of low molecular weight crown ethers and polymers with crown ether substituents. The adsorption was assessed by UV analysis of the supernatant solution, and with TGA and IR spectroscopy of the mica solids. In contrast to other layered silicates, the low molecular weight crown ethers show no affinity to any of the muscovite surfaces. The polymers can adsorb, however, depending on the type of surface cation. The results indicate that at least some of the crown ether moieties are complexed to surface cations and that the diameter of the ions at the surface plays an important role in the adsorption process.     

Mechanism of formation of alkali metal cation adducts in plasma desorption mass spectrometry of biomolecules

Experimental data on correlations between the directions of the incident primary ion and the ejected protonated [M + H]⁺ and alkali metal adduct [M + Cs]⁺ molecules for three peptide samples with an incident beam of 72.3 MeV ¹²⁷I¹⁴⁺ ions are reported. Measurements were carried out in a linear time-of-flight mass spectrometer by monitoring the secondary ion yield as a function of electrostatic deflection in a direction perpendicular to the spectrometer axis. No difference was observed in the direction in which [M + H]⁺ and [M + Cs]⁺ ionic species are preferentially desorbed. The results obtained suggest that alkali metal cation attachment to biomolecules in plasma desorption mass spectrometry is realized in a close spatial location and time interval with protonation. Formation of ion-molecule complexes occurs at an early stage of the desorption event and precedes their ejection into the gas phase.