Indole- and carbazole-substituted pyridinium iodide salts: a rare case of conformational isomerism in crystals

A series of indole- and carbazole-substituted pyridinium iodide salts has been synthesized and characterized. X-ray analysis revealed that the iodide salt of the indole-substituted cation (E)-4-(1H-indol-3-yl­vinyl)-N-methyl­pyridinium (IMPE⁺), C₁₆H₁₅N₂⁺·I⁻, (I), has two polymorphic modifications, (Ia) and (Ib), and a hemihydrate structure, C₁₆H₁₅N₂⁺·I⁻·0.5H₂O, (II). Until now, only one crystal modi­fication has been identified for the (E)-4-(9-ethyl-9H-carbazol-3-yl­vinyl)-N-methyl­pyridinium (ECMPE⁺) iodide salt, C₂₂H₂₁N₂⁺·I⁻, (III). Crystals of (Ia) and (Ib) comprise stacks of antiparallel cations with iodide anions located in the channels between the stacks. Due to the presence of the water mol­ecules, the packing in (II) is quite different to that found in (Ia) and (Ib), and positional disorder involving a statistical superposition of two rotamers of IMPE⁺, with different orientations of the indole fragment, was found. Crystals of (III) contain two independent ECMPE⁺ rotamers with different orientations of their carbazole substituents. The cations are packed in stacks, with the iodide anions located in the channels between the stacks. In (III), the iodide was found to be disordered over two sites, with occupancies of 0.83 and 0.17.     

New fluorous ponytailed 4‐[(2,2,2‐trifluoroethoxy)methyl]pyridinium halide salts

It is possible that fluorous compounds could be utilized as directing forces in crystal engineering for applications in materials chemistry or catalysis. Although numerous fluorous compounds have been used for various applications, their structures in the solid state remains a lively matter for debate. The reaction of 4‐[(2,2,2‐trifluoroethoxy)methyl]pyridine with HX (X = I or Cl) yielded new fluorous ponytailed pyridinium halide salts, namely 4‐[(2,2,2‐trifluoroethoxy)methyl]pyridinium iodide, C₈H₉F₃NO⁺·I⁻, (1), and 4‐[(2,2,2‐trifluoroethoxy)methyl]pyridinium chloride, C₈H₉F₃NO⁺·Cl⁻, (2), which were characterized by IR spectroscopy, multinuclei (¹H, ¹³C and ¹⁹F) NMR spectroscopy and single‐crystal X‐ray diffraction. Structure analysis showed that there are two types of hydrogen bonds, namely N—H…X and C—H…X. The iodide anion in salt (1) is hydrogen bonded to three 4‐[(2,2,2‐trifluoroethoxy)methyl]pyridinium cations in the crystal packing, while the chloride ion in salt (2) is involved in six hydrogen bonds to five 4‐[(2,2,2‐trifluoroethoxy)methyl]pyridinium cations, which is attributed to the smaller size and reduced polarizability of the chloride ion compared to the iodide ion. In the IR spectra, the pyridinium N—H stretching band for salt (1) exhibited a blue shift compared with that of salt (2).     

Molecular structures of 3‐[(2,2,3,3‐tetrafluoropropoxy)methyl]‐ and 3‐[(2,2,3,3,3‐pentafluoropropoxy)methyl]pyridinium saccharinates

The salts 3‐[(2,2,3,3‐tetrafluoropropoxy)methyl]pyridinium saccharinate, C₉H₁₀F₄NO⁺·C₇H₄NO₃S⁻, (1), and 3‐[(2,2,3,3,3‐pentafluoropropoxy)methyl]pyridinium saccharinate, C₉H₉F₅NO⁺·C₇H₄NO₃S⁻, (2), i.e. saccharinate (or 1,1‐dioxo‐1λ⁶,2‐benzothiazol‐3‐olate) salts of pyridinium with –CH₂OCH₂CF₂CF₂H and –CH₂OCH₂CF₂CF₃meta substituents, respectively, were investigated crystallographically in order to compare their fluorine‐related weak interactions in the solid state. Both salts demonstrate a stable synthon formed by the pyridinium cation and the saccharinate anion, in which a seven‐membered ring reveals a double hydrogen‐bonding pattern. The twist between the pyridinium plane and the saccharinate plane in (2) is 21.26 (8)° and that in (1) is 8.03 (6)°. Both salts also show stacks of alternating cation–anion π‐interactions. The layer distances, calculated from the centroid of the saccharinate plane to the neighbouring pyridinium planes, above and below, are 3.406 (2) and 3.517 (2) Å in (1), and 3.409 (3) and 3.458 (3) Å in (2).     

Weak hydrogen bonding and fluorous interactions in the chloride and bromide salts of 4‐[(2,2,3,3‐tetrafluoropropoxy)methyl]pyridinium

Neutralization of 4‐[(2,2,3,3‐tetrafluoropropoxy)methyl]pyridine with hydrohalo acids HX (X = Cl and Br) yielded the pyridinium salts 4‐[(2,2,3,3‐tetrafluoropropoxy)methyl]pyridinium chloride, C₉H₁₀F₄NO⁺·Cl⁻, (1), and 4‐[(2,2,3,3‐tetrafluoropropoxy)methyl]pyridinium bromide, C₉H₁₀F₄NO⁺·Br⁻, (2), both carrying a fluorous side chain at the para position of the pyridinium ring. Single‐crystal X‐ray diffraction techniques revealed that (1) and (2) are isomorphous. The halide anions accept four hydrogen bonds from N—H, ortho‐C—H and CF₂—H groups. Two cations and two anions form a centrosymmetric dimeric building block, utilizing complimentary N—H…X …H—Csp ³ connections. These dimers are further crosslinked, utilizing another complimentary Csp ²—H…X …H—Csp ² connection. The pyridinium rings are π‐stacked, forming columns running parallel to the a axis that make angles of ca 44–45° with the normal to the pyridinium plane. There are also supramolecular C—H…F—C interactions, namely bifurcated C—H…F and bifurcated C—F…H interactions; additionally, one type II C—F…F—C halogen bond has been observed.     

Two novel organic–inorganic hybrid materials from tetrachloridometallate(II) salts and 4‐[(E)‐2‐(pyridin‐1‐ium‐2‐yl)ethenyl]pyridinium

Two organic–inorganic hybrid compounds have been prepared by the combination of the 4‐[(E)‐2‐(pyridin‐1‐ium‐2‐yl)ethenyl]pyridinium cation with perhalometallate anions to give 4‐[(E)‐2‐(pyridin‐1‐ium‐2‐yl)ethenyl]pyridinium tetrachloridocobaltate(II), (C₁₂H₁₂N₂)[CoCl₄], (I), and 4‐[(E)‐2‐(pyridin‐1‐ium‐2‐yl)ethenyl]pyridinium tetrachloridozincate(II), (C₁₂H₁₂N₂)[ZnCl₄], (II). The compounds have been structurally characterized by single‐crystal X‐ray diffraction analysis, showing the formation of a three‐dimensional network through X—H...Cl_nM⁻ (X = C, N⁺; n = 1, 2; M = Co^II, Zn^II) hydrogen‐bonding interactions and π–π stacking interactions. The title compounds were also characterized by FT–IR spectroscopy and thermogravimetric analysis (TGA).     

Weak hydrogen and halogen bonding in 4‐[(2,2‐difluoroethoxy)methyl]pyridinium iodide and 4‐[(3‐chloro‐2,2,3,3‐tetrafluoropropoxy)methyl]pyridinium iodide

To enable a comparison between a C—H…X hydrogen bond and a halogen bond, the structures of two fluorous‐substituted pyridinium iodide salts have been determined. 4‐[(2,2‐Difluoroethoxy)methyl]pyridinium iodide, C₈H₁₀F₂NO⁺·I⁻, (1), has a –CH₂OCH₂CF₂H substituent at the para position of the pyridinium ring and 4‐[(3‐chloro‐2,2,3,3‐tetrafluoropropoxy)methyl]pyridinium iodide, C₉H₉ClF₄NO⁺·I⁻, (2), has a –CH₂OCH₂CF₂CF₂Cl substituent at the para position of the pyridinium ring. In salt (1), the iodide anion is involved in one N—H…I and three C—H…I hydrogen bonds, which, together with C—H…F hydrogen bonds, link the cations and anions into a three‐dimensional network. For salt (2), the iodide anion is involved in one N—H…I hydrogen bond, two C—H…I hydrogen bonds and one C—Cl…I halogen bond; additional C—H…F and C—F…F interactions link the cations and anions into a three‐dimensional arrangement.     

Collisionally activated dissociation of 2,4,6-triphenylpyridinium cations

Thresholds for the appearance of fragment ions allowed the estimation of threshold fragmentation energies (TFE) for the collisionally activated dissociation (CAD) in the gas phase of laser-desorbed pyridine-ring substituted N-benzylpyridinium cations to form pyridine and a carbocation. p-Methylbenzylpyridinium cation underwent an alternative CAD into pyridinium cation and the p-quinodimethane. The TFE are discussed in comparison with the energy differences (ΔΔH_f = ΔH_f(Py) + ΔH_f(R⁺) ? ΔH_f(Py ⁺R) calculated by the AM1 method to provide strong evidence for benzyl to tropylium cation rearrangement in an ion-molecule pair.     

Oxygen versus nitrogen interactions in lithium dinitramidate dihydrate and pyridinium dinitramidate

The title compounds, diaquadinitramidatolithium(I), [Li(N₃O₄)(H₂O)₂], (I), and pyridinium dinitramidate, C₅H₆N⁺·N₃O₄⁻, (II), differ significantly in their cation–anion contacts. The Li⁺ atom of (I) is coordinated by two O atoms of the dinitramide anion in a chelate and by four additional water molecules, with the Li and central N atom of the anion on a twofold rotation axis. The pyridinium cation of (II) exhibits a contact with the dinitramide anion via an intermolecular N—H...N hydrogen bridge. These interactions are compared with those found in reported anhydrous lithium dinitramide and ammonium dinitramide salts.     

Three hydrates of the bisphosphonate risedronate,consisting of one molecular and two ionic structures

Three different hydrates of risedronate were obtained by varying the pH of a solution containing the compound. At the pH values used, the N atom of the pyridine group is protonated and the compounds are zwitterionic. Crystals obtained directly from the synthesis resulted in risedronate monohydrate, or [1‐hydroxy‐1‐phosphono‐2‐(pyridinium‐3‐yl)­ethyl]phosphonate monohydrate, C₇H₁₁NO₇P₂·H₂O, (I), in which just one phosphonate group is negatively charged. Recrystallizations at pH values of 2 and 4 yielded risedronate dihydrate, or sodium [1‐hydroxy‐2‐(pyridinium‐3‐yl)­ethane‐1,2‐diyl]­bis­(phosphonate) dihydrate, Na⁺·C₇H₁₀NO₇P₂⁻·2H₂O, (II). Finally, recrystallizations at pH values of 7 and 8 produced risedronate 2.5‐­hydrate, or sodium [1‐hydroxy‐2‐(pyridinium‐3‐yl)­ethane‐1,2‐diyl]­bis­(phosphonate) 2.5‐hydrate, Na⁺·C₇H₁₀NO₇P₂⁻·­2.5H₂O, (III). At these four pH values, both phosphonate groups in (II) and (III) are negatively charged and coordinated to an Na⁺ ion. Crystals of (II), i.e. those grown at pH values of 2 and 4, have isomorphous polymeric ion aggregate structures with geminal phosphonate and alcohol groups coordinated to the same Na⁺ ion. On the other hand, crystals of (III), i.e. those grown at pH values of 7 and 8, have isomorphism polymeric ion aggregate structures with geminal phosphonate and alcohol groups coordinated to different Na⁺ ions.     

Isomorphism in 1‐(2‐halidobenzyl)‐4‐[(E)‐2‐(3‐hydroxyphenyl)ethenyl]pyridinium halide hemihydrates (halide = Cl,Br)

The crystal structures of two (E)‐stilbazolium salts, namely 1‐(2‐chlorobenzyl)‐4‐[(E)‐2‐(3‐hydroxyphenyl)ethenyl]pyridinium chloride hemihydrate, C₂₀H₁₇ClNO⁺·Cl⁻·0.5H₂O, (I), and 1‐(2‐bromobenzyl)‐4‐[(E)‐2‐(3‐hydroxyphenyl)ethenyl]pyridinium bromide hemihydrate, C₂₀H₁₇BrNO⁺·Br⁻·0.5H₂O, (II), are isomorphous; the isostructurality index is 99.3%. In both salts, the azastyryl fragments are almost planar, while the rings of the benzyl groups are almost perpendicular to the azastyryl planes. The building blocks of the structures are twofold symmetric hydrogen‐bonded systems of two cations, two halide anions and one water molecule, which lies on a twofold axis. In the crystal structure, these blocks are connected by means of weaker interactions, viz. van der Waals, weak hydrogen bonding and stacking. This study illustrates the robustness of certain supramolecular motifs created by a spectrum of intermolecular interactions in generating these isomorphous crystal structures.     

6‐Amino­nicotinic acid hydro­chloride

The title compound, 2‐amino‐5‐carboxy­pyridinium chloride, C₆H₇N₂O₂⁺·Cl^?, was isolated from a 1 M HCl aqueous solution containing 2‐amino‐5‐cyano­pyridine. The structure is held together by extensive hydrogen bonding between the chloride ions and the carboxylic acid, amino and pyridinium H atoms. The mol­ecules pack as sheets, with the sheets at a distance of 3.21 (3) Å from one another.     

Bis(2‐aminopyridinium) maleate

Two cyclic eight‐membered hydrogen‐bonded rings exist in the title compound, 2C₅H₇N₂⁺·C₄H₂O₄²⁻, involving the 2‐amino­pyridinium and maleate ions. The dihedral angle between the two pyridinium rings hydrogen bonded to the maleate ion is 74.80 (4)°. The maleate anion lies on a twofold axis and is linked to the pyridinium cations by intermolecular N—H⃛O hydrogen bonds. The heterocycle is fully proton­ated, which enables amino–imino tautomerization.     

The 1:1 adduct of Kemp's triacid with 2‐aminopyridine

The crystal structure determination of the molecular proton‐transfer adduct of Kemp's triacid (cis‐cis‐1,3,5‐tri­methyl­cyclo­hexane‐1,3,5‐tri­carboxylic acid, KTA) with 2‐amino­pyridine (2‐APY), namely 2‐amino­pyridinium 3,5‐di­carboxy‐1,3,5‐tri­methyl­cyclo­hexane­carboxyl­ate, 2‐APY⁺·KTA^? or C₅H₇N₂⁺·C₁₂H₁₇O₆^?, has revealed a centrosymmetric hydrogen‐bonded cyclic KTA homodimer repeating unit [O?O 2.524 (4) Å] linked into a polymer structure through the pyridinium and amino groups of the 2‐APY mol­ecule [O?N 2.736 (4), 2.989 (4) and 2.999 (4) Å].     

Mono­alkyl­ated 4′‐aryl‐substituted terpyridines

1‐Methyl‐2‐[4‐phenyl‐6‐(pyridinium‐2‐yl)­pyridin‐2‐yl]­pyridinium diperchlorate, C₂₂H₁₉N₃²⁺·2ClO₄⁻, (I), and 2‐[4‐(methoxy­phenyl)‐2,2′‐bipyridin‐6‐yl]‐1‐methyl­pyridinium iodide, C₂₃H₂₀N₃O⁺·I⁻, (II), both crystallize in the monoclinic space group P2₁/c. In contrast with the monocharged mol­ecule of (II), the doubly charged mol­ecule of (I) contains an additional protonated pyridine ring. One of the two perchlorate counter‐anions of (I) interacts with the cation of (I) via an N—H⋯O hydrogen bond. In (II), two mol­ecules related by a centre of symmetry are connected by weak π–π interactions, forming dimers in the crystal structure.     

Electron impact mass spectrometry of [C7H8N]+ and [C6H7]+ and [C6H7]+ fragment ions produced from o-toluidine and N-methylaniline

An energetic study of the production of [C₇H₈N]⁺ and [C₆H₇]⁺ fragment ions from o-toluidine and N-methylaniline is reported. The mechanisms for the formation of the ions are suggested. Metastable peaks associated with the formation and fragmentation of reactive [C₇H₈N]⁺ and [C₆H₇]⁺ ions were detected and kinetic energy released were determined. The results indicate that the [C₇H₈N]⁺ ion is formed at threshold from o-toluidine with an aminotropylium structure whereas for N-methylaniline the ion is formed with anN-phenylmethaniminium structure. [C₆H₇]⁺ ions are believed to be formed at threshold from the two precursors with a protonated benzene structure.     

Neutral 4‐phenyl‐1‐[phenyl(pyridin‐2‐yl)methylidene]semicarbazide and its salt forms with inorganic anions

Semicarbazones can exist in two tautomeric forms. In the solid state, they are found in the keto form. This work presents the synthesis, structures and spectroscopic characterization (IR and NMR spectroscopy) of four such compounds, namely the neutral molecule 4‐phenyl‐1‐[phenyl(pyridin‐2‐yl)methylidene]semicarbazide, C₁₉H₁₆N₄O, (I), abbreviated as HBzPyS, and three different hydrated salts, namely the chloride dihydrate, C₁₉H₁₇N₄O⁺·Cl^?·2H₂O, (II), the nitrate dihydrate, C₁₉H₁₇N₄O⁺·NO₃^?·2H₂O, (III), and the thiocyanate 2.5‐hydrate, C₁₉H₁₇N₄O⁺·SCN^?·2.5H₂O, (IV), of 2‐[phenyl({[(phenylcarbamoyl)amino]imino})methyl]pyridinium, abbreviated as [H₂BzPyS]⁺·X^?·nH₂O, with X = Cl^? and n = 2 for (II), X = NO₃^? and n = 2 for (III), and X = SCN^? and n = 2.5 for (IV), showing the influence of the anionic form in the intermolecular interactions. Water molecules and counter‐ions (chloride or nitrate) are involved in the formation of a two‐dimensional arrangement by the establishment of hydrogen bonds with the N—H groups of the cation, stabilizing the E isomers in the solid state. The neutral HBzPyS molecule crystallized as the E isomer due to the existence of weak π–π interactions between pairs of molecules. The calculated IR spectrum of the hydrated [H₂BzPyS]⁺ cation is in good agreement with the experimental results.     

4,4′‐(Azinodimethylene)dipyridinium bis(tetrafluoroborate) and 4‐[(4‐pyridylmethylene)hydrazonomethyl]pyridinium perchlorate: two different hydrogen‐bonding motifs

In the crystal structures of the title compounds, C₁₂H₁₂N₄²⁺·2BF₄⁻, (I), and C₁₂H₁₁N₄⁺·ClO₄⁻, (II), respectively, infinite two‐ and one‐dimensional architectures are built up via N—H...F [in (I)] and conventional N—H...N [in (II)] hydrogen bonding. The N—N single bond in (I) lies on a crystallographic centre of symmetry; as a result, the two pyridinium rings are parallel. In (II), the pyridinium and pyridyl ring planes are inclined with a dihedral angle of 14.45 (3)°.     

Structural comparison of three N‐(4‐halogenophenyl)‐N′‐[1‐(2‐pyridyl)ethylidene]hydrazine hydrochlorides

2‐{1‐[(4‐Chloroanilino)methylidene]ethyl}pyridinium chloride methanol solvate, C₁₃H₁₃ClN₃⁺·Cl⁻·CH₃OH, (I), crystallizes as discrete cations and anions, with one molecule of methanol as solvent in the asymmetric unit. The N—C—C—N torsion angle in the cation indicates a cis conformation. The cations are located parallel to the (02) plane and are connected through hydrogen bonds by a methanol solvent molecule and a chloride anion, forming zigzag chains in the direction of the b axis. The crystal structure of 2‐{1‐[(4‐fluoroanilino)methylidene]ethyl}pyridinium chloride, C₁₃H₁₃FN₃⁺·Cl⁻, (II), contains just one anion and one cation in the asymmetric unit but no solvent. In contrast with (I), the N—C—C—N torsion angle in the cation corresponds with a trans conformation. The cations are located parallel to the (100) plane and are connected by hydrogen bonds to the chloride anions, forming zigzag chains in the direction of the b axis. In addition, the crystal packing is stabilized by weak π–π interactions between the pyridinium and benzene rings. The crystal of (II) is a nonmerohedral monoclinic twin which emulates an orthorhombic diffraction pattern. Twinning occurs via a twofold rotation about the c axis and the fractional contribution of the minor twin component refined to 0.324 (3). 2‐{1‐[(4‐Fluoroanilino)methylidene]ethyl}pyridinium chloride methanol disolvate, C₁₃H₁₃FN₃⁺·Cl⁻·2CH₃OH, (III), is a pseudopolymorph of (II). It crystallizes with two anions, two cations and four molecules of methanol in the asymmetric unit. Two symmetry‐equivalent cations are connected by hydrogen bonds to a chloride anion and a methanol solvent molecule, forming a centrosymmetric dimer. A further methanol molecule is hydrogen bonded to each chloride anion. These aggregates are connected by C—H...O contacts to form infinite chains. It is remarkable that the geometric structures of two compounds having two different formula units in their asymmetric units are essentially the same.     

A whole zoo of hydrogen bonds in one crystal structure: tris(isonicotinium) hydrogensulfate sulfate monohydrate

Depending on the reaction partner, the organic ditopic molecule isonicotinic acid (Hina) can act either as a Brønsted acid or base. With sulfuric acid, the pyridine ring is protonated to become a pyridinium cation. Crystallization from ethanol affords the title compound tris(4‐carboxypyridinium) hydrogensulfate sulfate monohydrate, 3C₆H₆NO₂⁺·HSO₄⁻·SO₄²⁻·H₂O or [(H₂ina)₃(HSO₄)(SO₄)(H₂O)]. This solid contains 11 classical hydrogen bonds of very different flavour and nonclassical C—H…O contacts. All N—H and O—H donors find at least one acceptor within a suitable distance range, with one of the three pyridinium H atoms engaged in bifurcated N—H…O hydrogen bonds. The shortest hydrogen‐bonding O…O distance is subtended by hydrogensulfate and sulfate anions, viz. 2.4752 (19) Å, and represents one of the shortest hydrogen bonds ever reported between these residues.     

1,1‐Bis­(phenyl­sulfonyl)‐1‐(pyridinio)­methanide

The title di­sulfonyl‐stabilized pyridinium yl­ide, C₅H₅N⁺–C⁻(SO₂C₆H₅)₂ or C₁₈H₁₅NO₄S₂, contains a near planar NCS₂ core. The structure suggests that the formal negative charge of the yl­ide C atom is delocalized to the S atoms rather than the N atom. Structural features of pyridinium yl­ides are briefly discussed.