Synthesis of polynucleotide analogs by grafting optically active adenine,cytosine, and hypoxanthine derivatives onto polytrimethylenimine

A new family of polynucleotide analogs were prepared by grafting nucleic acid base derivatives onto polytrimethylenimine. Several new optically pure α-nucleic acid base substituted propanoic acids were prepared as pendant groups. The (R)-ethyl adeninylpropanoate was obtained from adenine and (S)-ethyl lactate by utilizing a diethyl azodicarboxylate-triphenyl phosphine method. Subsequent hydrolysis of the ester in aqueous acid gave the (R)-adeninylpropanoic acid without racemization. The reaction of cytosine sodium salt with (S)-ethyl 2-[(methylsulfonyl)oxy] propanoate produced the 20% racemized (R)-ethyl 2-(cytosin-1-yl)propanoate. The optically pure ester was obtained by recrystallization from ethyl alcohol, which was hydrolyzed in aqueous acid to give the (R)-acid with 66% enantiomeric excess. The (R)-2-(hypoxanthin-9-yl)propanoic acid was prepared by reaction of (R)-2-(adenin-9-yl)propanoic acid with sodium nitrite. The pendant groups were allowed to react with N-hydroxy compounds in the presence of dicyclohexylcarbodiimide to give the active esters. These active esters underwent reaction with N,N-dipropylamine to provide monomer model compounds. The pendant groups were grafted onto polytrimethylenimine by using the active ester method. The racemization reactions were observed in the grafting reactions. The resulting polymers showed a range of percent grafting from 60 to 80%.     

Syntheses of polyethylenimine containing asymmetric nucleic acid base derivatives as grafted pendants

Preparations of new model polymers of polynucleotides with linear polyethylenimine (PEI) backbones and optically active nucleic acid base derivatives as pending side chains are described. (±)-2-(Thymin-1-yl)propionic acid (II) and (±)-2-(adenin-9-yl)propionic acid (IV) were synthesized. These carboxylic acid derivatives were grafted onto PEI at the imino nitrogen by the p-nitrophenyl active ester method. The enantiomeric pairs of II were optically resolved with quinine to yield (?) and (+)-2-(thymin-1-yl)propionic acid (VII and VIII). VII and VIII were grafted onto PEI through amide bond by direct coupling with diethylphosphoryl cyanide to give optically active graft polymers. The related monomer and dimer model compounds were also prepared by the same method from diethylamine and dimethylethylene diamine, respectively.     

Enantioselektive α-Alkylierung von Asparagin- und Glutaminsäure über die Dilithium-enolatocarboxylate von 2-[3-Benzoyl-2-(tert-butyl)-1-methyl-5-oxoimidazolidin-4-yl]essigsäure und 3-[3-Benzoyl-2-(tert-butyl)-1-methyl-5-oxoimidazolidin-4-yl]propionsäure

Overall Enantioselective α-Alkylation of Aspartic and Glutamic Acid through Dilithium Enolatocarboxylates of 2- [3-Benzoyl-2-(tert-butyl)-1-methyl-5-oxoimidazolidin-4-yl]acetic and 3-[3-Benzoyl-2-(tert-butyl)-1-methyl-5-oxoimidazolidin-4-yl]propionic Acid, respectively The pure methyl esters 10 of the heterocyclic carboxylic acids specified in the title were prepared in several steps by known methods from aspartic and glutamic acid, with overall yields of ca. 20%. The corresponding heterocyclic acids 11 were doubly deprotonated by LiNEt₂/BuLi or LiN(i-Pr)₂/BuLi to give enolatocarboxylates ( 3 ). The latter were reacted with electrophiles (MeOD, Mel, C₆H₅CH₂Br) to give the crystalline products 14 – 21 diastereoselectively. Hydrolysis of the imidazolidinone ring of three such products gave the corresponding α-branched aspartic and glutamic acids 22 – 24 of known absolute configuration, thus establishing the stereochemical course of the overall enantioselective alkylations.     

Synthesis of α-methyl-β-(3-methylpyrazol-1-yl)-and α-methyl-β-(5-methylpyrazol-1-yl)propionic acids and their esterification with vinyl acetate

α-Methyl-β-(3-methylpyrazol-1-yl)-and α-methyl-β-(5-methylpyrazol-1-yl)propionic acids were synthesized by reaction of 3(5)-methylpyrazole with methyl methacrylate, followed by separation of the resulting isomeric esters and their hydrolysis. Esterification of the title acids was performed via vinyl exchange reaction with vinyl acetate in the catalytic system mercury acetate-trifluoroacetic acid.     

Synthesis of polyamide containing optically active thymine derivative as a grafted pendant

A new route to polyamides containing optically active thymine groups as pendants has been established. The method is based on the grafting of (–) and (±)-2-(thymin-1-yl)propionic acid [(–) and (±) TPA] onto a polyamide containing hydroxyl groups. The hydroxy polyamide was prepared by selective N-acylation of an active diester of N-hydroxy-5-norborene-2,3-dicarboxamide (HONB), N,N'-(isophthaloyl-dioxy)-bis(5-norbornene-2,3-dicarboximide) (IPBONB), with 1,3-diamino-2-hydroxypropane (AHP). Model compounds (?) and (±)-(1,3-dibenzoylamino-2-propyl)2-(thymin-1-yl)propionate[(?) and (±) (BAPTP)] were prepared by direct, low-temperature esterification before synthesizing the polymer.     

Nucleic acid base grafted imino polyurethane

Preparation of two model polymers of polynucleotides with linear polyurethane backbone and 2-(thymin-1-yl)propionyl or 2-(uracil-1-yl)propionyl group as grafted pendant are described. 2-(Thymin-1-yl)propionic acid (TPA) and 2-(uracil-1-yl)propionic acid (UPA) were grafted into partial imino functionalized polyurethane, poly[(β,β′-diethylene)amine methylene bis(4-phenylcarbamate)]-75 (PU-NH-75), at the secondary amino group through amide bonds with 1-hydroxybenzotriazole (HOBT) using the active ester technique. Two novel polymer models of polynucleotides, poly[(N-(2-(thymin-1-yl)propionyl)-β,β′-diethylene)amine methylene bis(4-phenylcarbamate)]-75 (PU-NT-75) and poly[(N-(2-(uracil-1-yl)propionyl)-β,β′-diethylene)amine methylene bis(4-phenylcarbamate)]-75 (PU-NU-75) were obtained. The imino polyurethane PU-NH-75 was produced from the partially deprotected N-Cbz imino polyurethane, poly[N-(benzyloxycarbonyl-β,β′-diethylene)amine methylene bis(4-phenylcarbamate)] (PU-NCbz) which was prepared by the polyaddition of 4,4′-diphenylmethane diisocyanate (MDI) with diol monomer N-benzyloxycarbonyl-β,β′-dihydroxyethylamine (CbzHEA). Selective N-protection of N-benzyloxycarbonyloxy-5-norbornene-2,3-bicarboximide (CbzONB) with β,β′-dihydroxyethylamine (HEA) gave the N-Cbz protected diol monomer HEA. The related monomer model compounds were also prepared by the same methods.     

Regioselectively nucleus and/or side-chain fluorinated 2-(Phenanthryl)propionic acids by an effective combination of radical and organometallic chemistry

Regioselectively nucleus and/or side-chain fluorinated 2-(phenanthr-1-yl)- and 2-(phenanthr-2-yl)propionic acids 1-5 were prepared using phenanthren-1(2H)-ones 6a-c as key intermediates. Thus, ethyl 2-(fluorophenanthryl)propionates 11 were obtained in good yields by Reformatsky reaction of 6a-c with ethyl 2-bromopropionate followed by dehydratation and DDQ-promoted aromatization of the resulting beta-hydroxyesters. Side-chain alkyl 2-hydroxy-2-(phenanthr-1-yl)propionates 14 were obtained by bromine/lithium permutation of dihydrophenanthryl bromides 12a-c with butyllithium followed by quenching of the lithiated intermediates with methyl pyruvate or ethyl 3,3,3-trifluoropyruvate and subsequent DDQ-promoted aromatization. The alkyl 2-hydroxy-2-(phenanthr-1-yl)propionates 25 were prepared by reacting 8-bromo-1,3-difluorophenanthrene 24 with butyllithium for 10 seconds at -110 degrees C and subsequent addition of the suitable pyruvate to the lithiated intermediates. Alkyl 2-hydroxy-2-(phenanthr-2-yl)propionates 26 and 29 were suitably obtained by site-selective metalation of 1,3-difluorophenanthrene 28 and the bromophenanthrene 24, respectively, with LDA followed by quenching of the metalated intermediates with the suitable alkyl pyruvate. Fluorination of the above alpha-hydroxypropionates with DAST, followed by the alkaline hydrolysis, allowed the expected 2-(phenanthryl)propionic acids 1-5 to be obtained in satisfactory overall yields.     

Chinazolincarbonsäuren. VII. Mitteilung. Ein einfacher Zugang zu (4-Oxo-3,4-dihydrochinazolin-3-yl)-alkansäuren, (4-Oxo-3,4-dihydro-1,2,3-benzotriazin-3-yl)-alkansäuren und deren Estern

Quinazoline Carboxylic Acids. An Easy Route to (4-Oxo-3,4-dihydroquinazolin-3-yl)-alkanoic Acids, (4-Oxo-3,4-dihydro-1,2,3-benzotriazin-3-yl)-alkanoic Acids and their Esters A new route was found for the synthesis of (4-Oxo-3,4-dihydroquinazolin-3-yl)-alkanoic acids ( 8 ) and (4-Oxo-3,4-dihydro-1,2,3-benzotriazin-3-yl)-alkanoic acids ( 6 ) by cyclization of the N-(2-aminobenzoyl)amino acids 5 with HCOOH or HNO₂. 2H-3,1-Benzoxazine-2,4(1H)-diones ( 1 ) reacted with glycine esters to 2 , which were cyclized by HNO₂ to the esters 4 . Ester 4 was hydrolyzed to 6 (X = CH₂). Diones 1 reacted with the most common amino acids (as the ammonium salt of tertiary amine) to amino-alkanoic acids 5 , which were cyclized with orthoformate to 7 or 8 depending on the reaction conditions.     

Synthesis of polyesters containing nucleic acid base derivatives as pending side chains

Preparations of four diol monomers containing nucleic acid bases and the corresponding model polymers of polynucleotides with linear polyester backbone and nucleic acid base derivative as pending side chains are described. N-(1′,3′-Dihydroxy-2′-methyl-2′-propyl)-2-(thymin-l-yl)propionamide ( Ia , HMPTPA), N-(1′,3′-dihydroxy-2-methyl-2′-propyl)-2-(uracil-l-yl)propionamide ( Ib , HMPUPA), and their isomers, N-(β,β′-dihydroxyethyl)-2-(thynin-1-yl)propionamide ( IIa , HETPA) and N-(β,β′-dihydroxyethyl)-2-(uracil-1-yl)propionamide ( IIb , HEUPA) were synthesized through the selective N-acylation of 2-methyl-2-amino-1,3-propanediol and diethanolamine with 2-(thymin-1-yl)propionic acid (TPA) and 2-(uracil-1-yl)propionic acid (UPA), respectively, by the active amide-benzotriazole method. Diol monomers I and II were polycondenzed with active amide of benzotriazole such as 1,1′-(isophthaloyl)bisbenzotriazole (IPBBT) in the presence of triethylamine and in DMF at 60°C, giving polyesters containing thymine and uracil derivatives as the side group. Prior to polymer synthesis, an O-acylation of Ia using the active monoamide l-benzoylbenzotriazole was carried out as a model compound study.     

Synthesis of polyurethanes containing nucleic acid base derivatives as grafted pendants and their precursor amino functionalized polyurethane

A new route to polyurethanes containing nucleic acid base derivatives as grafted pendants have been established. The method is based on the grafting of 2-(thymin-1-yl)propionic acid (TPA) or 2-(adenin-9-yl)propionic acid (APA) onto amino functionalized polyurethane, poly[2-amino-2-methyl-1,3-propylene methylene bis(4-phenyl carbamate)] (PU-NH₂, IX ) at the primary amino group by the N-hydroxy compound of active ester technique. Two novel polymer models of polynucleic acid—poly[2-(2′-(thymin-1′-yl) propionamido)-2-methyl-1,3-propylene methylene bis(4-phenylcarbamate)] (PU–NHT, X ) and poly[2-(2′-(adenin-9′-yl)propionamido)-2-methyl-1,3-propylene methylene bis(4-phenylcarbamate)] (PU–NHA-40, XI )—were obtained. The amino functional polyurethane was prepared by the following three step reactions; (1) Selective N-protection of N-benzyloxycarbonyloxy-5-norbornene-2,3-dicarbonimide (CbzONB) with 2-amino-2-methyl-1,3-propanediol gave the N-protecting diol monomer 2-benzyloxycarbonylamino-2-methyl-1,3-propanediol (CbzAMP); (2) N-Protecting polurethane poly(2-benzyloxycarbonylamino-2-methyl-methyl-1,3) propylene methylene bis(4-phenylcarbamate) (PU–NHCbz, VIII ) was obtained by the polyaddition of 4,4′-diphenyl-methane diisocyanate (MDI) with CbzAMP. (3) Deprotection of PU–NHCbz produced amino polyurethane PU-NH₂. Prior to polymer synthesis, the amidation of APA with 3-aminoheptane or diethylamine were carried out as a model reaction study and the related monomer model compounds were prepared by the same methods.     

The chemistry of polycyclic arene imines. VII. Reactions of phenanthrene 9,10-imine with aromatic carboxaldehydes,carboxylic acids and acetylenic esters

The reactions of phenanthrene 9,10-imine ( 1 ) with aromatic aldehydes, benzoic acids and acetylenedi-carboxylic esters were investigated. The aldehydes were shown to give 1-[N-(arylmethylidene)-9-phenanthreneamine-10-yl]-1a,9b-dihydrophenanthro[9,10-b]azirine 2. The ‘dimeric’ structure of these products was established by X-ray diffraction analysis. The carboxylic acids proved to form in the presence of dicyclohexylcarbodiimide, N-aroylphenanthrene 9,10-imines 7 , that readily undergo rearrangement to N-aroyl-9-phenanthrenamines 8. Esters of acetylenedicarboxylic acid gave the corresponding esters of (Z)-2-(1a,9b-dihydrophenanthro[9,10-b]azirine-1-yl)-2-butendioic acid 10 .     

Directed synthesis and immunoactive properties of (2-hydroxyethyl)ammonium salts of 1-R-indol-3-ylsulfanyl(sulfonyl)alkanecarboxylic acids

A general method for the synthesis of 1-alkyl(allyl)(benzyl)-substituted (indol-3-yl)-sulfanylalkanecarboxylic acids and hexane-1,6-diyl(1,4-phenylenemethylene)bisindol-3-ylsulfanylalkanecarboxylic acids from the corresponding N-substituted indoles and bisindoles, thiourea, iodine, and halogencarboxylic acids was developed. The oxidation of substituted (indol-3-yl)sulfanylalkanecarboxylic acids for the first time afforded their analogs containing the sulfonyl group. New (2-hydroxyethyl)ammonium salts of 1-R-indol-3-ylsulfanyl(sulfonyl)-alkanecarboxylic acids, which are structural analogs of highly active immunomodulators of indacetamin and VILIM, were synthesized. Among the studied (2-hydroxyethyl)ammonium salts of 1-R-indol-3-ylsulfanylacetic and -sulfonylalkanecarboxylic acids, the compounds exhibiting high dose-dependent antiproliferative activity by the ability to affect the spontaneous and mitogen-stimulated splenocyte proliferation of mice in vitro were found.     

New 7-substituted quinolone antibacterial agents. II. The synthesis of 1-ethyl-1,4-dihydro-4-oxo-7-(pyrazolyl,isoxazolyl, and pyrimidinyl)-1,8-naphthyridine and quinolone-3-carboxylic acids

Synthetic methods for the construction of certain aromatic heterocyclic side chains for the quinolone anti-bacterials have been provided. In particular a series of 7-(pyrazol-3 or 4-yl, 4- or 5-isoxazolyl and 4- or 5-pyrimidinyl)-1-ethyl-1,4-dihydro-4-oxo-1,8-naphthyridine and quinoline-3-carboxylic acids have been prepared. All of the heterocycles were prepared from masked 1,3-dicarbonyl derivatives of nalidixic acid ( 9,17 ) or 7-acetyl-1-ethyl-1,4-dihydro-4-oxo-3-quinoline carboxylic acids ( 8 ). These masked 1,3-dicarbonyl derivatives were prepared by the use of t-butoxy-bis-dimethylaminomethane on the activated methyls of 9,19 and 8 . The pyrimidinyl analogs, substituted with a 2-amino or a 2-aminomethyl moiety, were the only derivatives with substantial antibacterial activity.     

Synthesis of poly(vinylamine) containing asymmetric nucleic acid base derivatives as grafted pendants

The preparations of new model polymers of polynucleotides with stereoregular poly(vinylamine) (PVAm) backbones and an optically active nucleic acid base derivative as a pending side chain are described. The grafting of (±)-, (+)-, and (?)-2-(thymin-1-yl) propionic acid to linear PVAm prepared either by hydrolysis of poly(vinyl acetamide) or poly(vinyl-t-butyl carbamate) has proven to be more difficult than the case of polyethyleneimine. This may be due to a combination of the low solubility and steric factors of PVAm. PVAm formed a complex with oximes such as ethyl-2-hydroxyimino cyanoacetate (EHICA), which activates the amino group of PVAm; it became soluble in polar solvents and gave higher percent graft. These carboxylic acid derivatives were grafted onto PVAm through amide bonds by direct coupling with sulfonic acid esters of hydroxybenzotriazoles to give optically active graft polymers. These coupling agents were found to be much superior reagents than DEPC regarding racemization. The related monomer and dimer model compounds were also prepared by the same method from 3-aminopentane and (?)-, (+)-, and meso-2,4-diaminopentane, respectively. The dimer models were separated and purified by HPLC to give models for isotactic, heterotactic, and syndiotactic polymer models. The enantiomeric purity of the optically active monomer model was determined by 360-MHz NMR spectroscopy using optically active shift reagents.     

Synthesis of diols containing 5-benzyluracil base and their polymers

Preparation of analogs of acyclic nucleoside, two diols containing 5-benzyluracil base derived from 2-(5-benzyluracil-1-yl)propanoic acid (BUPA), and the corresponding model polymers of polynucleotide with linear polyester backbone and 2-(5-benzyluracil-1-yl)propionamido-type pendant as a side chain are described. N-(1′,3′-Dihydroxy-2′-methyl-2′-propyl)-2-(5-benzyluracil-1-yl)propionamide (HEBUPA) and its isomer N(β,β′-dihydroxyethyl)-2-(5-benzyluracil-1-yl)propionamide (HEBUPA) were prepared through the selective N-acylation of primary aminodiol, 2-methyl-2-amino-1,3-propanediol and secondary aminodiol, diethanolamine with BUPA, respectively, by the active ester-N-hydroxy-5-norbornene-2,3-dicarboximide (HONB) method. The resulting diols were polycondensed with active diamide of benzotriazole (HBT) such as 1,1′-(terephthaloyl)bisbenzotriazole (PBBT), 1,1′-(isophthaloyl)bisbenzotriazole (IPBBT), 1,1′-(sebacocyl)bisbenzotriazole (SeBBT), giving semirigid and flexible polyesters containing 5-benzyluracil derivative as the side group, by the selective O-acylation of active diamide-benzotriazole technique. Diols HMBUPA and HEBUPA were found to be very potent inhibitors of uridine phosphorylase isolated from Sarcoma 180 cells, with K_i values of 0.13 and 0.11 μM, respectively.     

Anisotropic derivatives of (-)-L-lactic acid and their nanocomposites

The paper describes the synthesis and physical-chemical properties of anisotropic derivatives of (-)-L-lactic acid and their nanocomposites. Anisotropic optically active aryl (S)-2-(ω-halogenalkoxy)lactates and (R)-2-aryloxypropionic acids have been synthesised by the modification of corresponding 3,6-disubstituted cyclohex-2-enones, (-) ethyl L-lactate and ethyl esters of (S)-2-(4-bromobutoxy)- and (S)-2-(6-bromohexyloxy)propionic acids. The optically active (R)-2-aryloxypropionic acids were used for the preparation of mesomorphic nanocomposite materials and their properties were studied. Anisotropic materials based on the derivatives of lactic acid are capable to interact with inorganic nanoparticles providing a tool for the creation of new nanocomposite materials.     

Synthesis of pyrrolo[1,2-b]cinnolines

The synthesis of the pyrrolo[1,2-b]cinnoline analogs 2 and 4–13 is described. The key step of this synthesis involves an intramolecular aromatic halide displacement on [2-(2-halobenzoyl)pyrrol-1-yl]carbamic acid esters. Several reactions of these cinnoline analogs with electrophilic reagents have been investigated.     

Synthesis and transformations of derivatives of 2-aryl-5-(3,5-dimethyl-1H-pyrazol-1-yl)-1,3-oxazole-4-carboxylic acid

On the basis of methyl esters of 2-aryl-5-hydrazino-1,3-oxazole-4-carboxylic acids the earlier unknown methyl esters of 2-aryl-5-(3,5-dimethyl-1H-pyrazol-1-yl)-1,3-oxazole-4-carboxylic acids as well as their functional derivatives were synthesized. The latter were used for further transformations, in particular, for introducing the residues of highly basic aliphatic amines into the 5 position of oxazole, and the oxazol-2-yl moiety into the 4 position of the oxazole ring.     

Synthesis of linear poly(ethylenimine) containing nucleic acid pendants as polynucleotide analogs

Polynucleotide analogs with a linear poly(ethylenimine) (PEI) backbone and adenine, cytosine, and hypoxanthine pendants were synthesized. Linear PEI was synthesized by the cationic ring-opening polymerization of 2-H-2-oxazoline, followed by acid hydrolysis. 2-(Adenin-9-yl)- and 2-(N⁶-benzyladenin-9-yl)-, 2-(cytosin-1-yl)propanoic acids in addition to 2-(adenin-9-yl)-3-methyland 3-(cytosin-1-yl)butanoic acids were synthesized from their respective nucleic acid bases. 2-(Hypoxanthin-9-yl)propanoic acid and 3-(hypoxanthin-9-yl)butanoic acid were converted from the corresponding adenine derivatives by reaction with nitrous acid. Grafting reactions of pendant groups onto various molecular weight PEI backbones were carried out at room temperature, using the coupling agent norborn-5-ene-2,3-carboximido diphenyl phosphate (PPONB), generally resulting in percent graft values greater than 90%. PPONB showed selectivity against the amino group of adenine and cytosine rings. The appropriate model compounds were also prepared.     

Synthesis of polynucleotide analogs by grafting optically active nucleic acid base derivatives onto polyethylenimine

Polynucleotide analogs with a polyethylenimine backbone and optically active thymine- and adenine-containing pendants and their model compounds were synthesized. The pendants were prepared by the addition reaction of the nucleic acid base to ethyl crotonate. The ammonium salt of 3-(adenin-9-yl)butyric acid was employed to replace its free acid for the formation of diastereomeric salt with brucine. Fractional crystallization of the diastereomeric salt generates the partially resolved enantiomers. The solubility difference between the racemic mixture and its enantiomer was utilized to obtain the pure enantiomers. The active esters of the pendants were prepared. Grafting reactions were carried out by the reaction of active esters with PEI at room temperature. Completely grafted polymers were obtained.