A maximum likelihood estimator to distinguish single molecules by their fluorescence decays

We have developed a maximum likelihood estimator to distinguish between similar molecules at the single molecule level based upon fluorescence decay measurements. Time resolved fluorescence measurements for single Rhodamine 6G and tetramethylrhodamine isothiocyanate molecules in fluid flow are derived from time-correlated single photon counting. A maximum likelihood estimator is developed and applied to data from a mixture of molecules. Single molecules are identified and distinguished by their fluorescence time decays. Comparison is made between identification error rates and theoretical predictions. To our knowledge, this is the first reported example of single molecule identification by fluorescence decay in a mixture.     

Spectral imaging of single molecules by transmission grating-based epi-fluorescence microscopy

A spectral imaging method of single protein molecules labeled with a single fluorophore is presented. The method is based on a transmission grating and a routine fluorescence microscope. The bovine serum alubmin (BSA) and antiBSA molecules labeled with Alexa Fluor 488 and Alexa Fluor 594, respectively, are used as the model proteins. The fluorescence of single molecules is dispersed into zeroth-order spectrum and first-order spectrum by the transmission grating. Results show that the fluorescence emission spectrum of single molecule converted from the first-order spectral imaging is in good agreement with the bulk fluorescence spectrum. The spectral resolution of 2.4 nm/pixel is obtained, which is sufficient for identifying the molecular species in a multicomponent system.     

On the distribution of dye molecules in stretched poly(vinyl alcohol)

The symmetry of the orientational distribution function of dye molecules in stretched PVA films is studied using polarized fluorescence. The different symmetries are monitored by a simple experimental technique in which angle-resolved fluorescence depolarization ratios are measured. A uniaxial distribution of rhodamine 6G molecules is obtained on stretching the film at temperatures above 60°C. In contrast a biaxial distribution of trypaflavine molecules is found for stretch temperatures in the 50–115°C range. It is suggested that the hydrogen bonding between the PVA chains, and between the dye molecules and the PVA chains, influences the symmetry of the distribution upon stretching.     

Absorption and fluorescence of single molecules

Simultaneous detection of single molecules by absorption and fluorescence is demonstrated using confocal microscopy at cryogenic temperature. Dynamical processes such as blinking and spectral jumping of single emitters are observed in both detection channels. The relative magnitude of fluorescence and absorption varies between molecules. In particular, we observe molecules that do not emit detectable Stokes-shifted fluorescence but show a strong absorption signal. The fact that coherent resonant scattering underlies the absorption process is demonstrated by a correlation between small linewidth and large absorption amplitude.     

双光子荧光探针研究及其应用

双光子荧光显微成像兼具诸如近红外激发、暗场成像、避免荧光漂白和光致毒、定靶激发、高横向分辨率与纵向分辨率、降低生物组织吸光系数及降低组织自发荧光干扰等特点而显著地优于单光子荧光显微成像,为生命科学研究提供了更为锐利的工具。而用于像离子的含量及其对生理的影响、离子参与的生理活动机制、离子与分子的作用、特定分子的分布及其相互作用等方面研究的双光子荧光探针,是实现成像的关键。双光子荧光探针的研究旨在促进双光子荧光显微镜应用的发展,促进生命科学、医学科学的快速发展,同时也带动双光子荧光探针所隶属的化学这一学科的发展。因此对双光子荧光探针的研究具有重要的理论和实践意义。该文综述了双光子荧光显微成像的优点、双光子荧光探针设计的原理及双光子荧光探针在离子分析方面的应用,并展望了这类荧光探针的发展趋势与应用前景。     

Synchronous Fluorescence Spectra of Hemoglobin: A Study of Aggregation States in Aqueous Solutions

The synchronous fluorescence spectra of hemoglobin solutions are reported for the first time. The main fluorescence peaks observed in the spectra are assigned. The effect of the concentration of hemoglobin solution on the spectra is studied. Characteristic fluorescence peaks due to the dimer and tetramer of hemoglobin molecules are recognized.     

Quantitative determination of the single-molecule detection regime in fluorescence fluctuation microscopy by means of photon counting histogram analysis

Fluorescence fluctuation experiments are performed in single-molecule detection regime if the fluorescence of at most one molecule is registered at a time. Although the significance of such experiments for investigations of complex nonergodic systems like those met in the biosciences has been stressed out by many scientists, the quantitative and accurate determination of the single-molecule detection regime received rather little attention. In this work we present a method based on the photon counting histogram (PCH) analysis, which enables the determination of the average number N of molecules within the observation volume, for which only the fluorescence of individual molecules is detected at a time. Thus, the accurate design of fluorescence fluctuation experiments performed in single-molecule detection regime is possible. Demonstrative fluorescence fluctuation experiments based on two-photon excitation are performed on diluted solutions of coumarin 153, in order to verify the potential of the PCH analysis in experiments on the single-molecule detection level. If the mean number N of molecules within the excitation volume is larger than 0.048, the probability to simultaneously detect the fluorescence of two or more molecules is no longer negligible, i.e., no single-molecule detection regime. If the mean number N of molecules is lower than 0.0057, the detection limit of the method is reached, i.e., the fluorescence signal cannot be distinguished from the background. Consequently, the concentration of coumarin 153 characteristic for the single-molecule detection regime lies in the range 13-110 pmol/l for the given experimental conditions. We also investigate the influence of the molecular brightness, i.e., detected photons per fluorophore molecule and sampling time, on the single-molecule detection regime.     

Single molecule blinking and photobleaching separated by wide-field fluorescence microscopy

Single molecule fluorescence detection of Atto590 in poly(vinyl alcohol) was achieved by using a wide-field epifluorescence microscope with CCD-camera detection. Image sequences are obtained from which the time traces of the detected molecules are built. We find a distinctive difference between the time evolution of the fluorescence originating from the molecules detected in the first image of the sequence compared to the time evolution of the fluorescence of the molecules detected in each image of the sequence. Atto590 shows very long blinking times and photobleaching and photoblinking that are both quadratically dependent on the irradiation power density. Our approach allows kinetic separation of photobleaching from blinking. The possibility of choosing different ensembles of molecules is demonstrated and taken advantage of for this aim. Initially dark molecules or low emitting ones that might be overlooked are important to describe the complete ensemble behavior.     

Synthesis and Photophysics of Core‐Substituted Naphthalene Diimides: Fluorophores for Single Molecule Applications

The synthesis and photophysics of two new aminopropenyl naphthalene diimide (SANDI) dyes are reported. A general and convenient method for the synthesis of the precursor mono‐, di‐, and tetrabrominated 1,4,5,8‐naphthalene tetracarboxylic dianhydrides is described. The two core‐substituted SANDIs exhibit many of the photophysical properties required for fluorescence labeling applications including high photostability and high fluorescence quantum yields (>0.5) in the visible region of the spectrum. The emission wavelength is sensitive to the number of substituents on the NDI core, and the fluorescence decay times are in the range of ～8–12 ns for both compounds in the solvents investigated. Preliminary fluorescence emission data from single molecules of the compounds embedded in poly(methyl methacrylate) films are also reported and show that single molecules have very low yields of photobleaching, particularly the di‐substituted system. Furthermore, only a small proportion (<10 %) of the single molecules studied display fluorescence intermittencies or “blinks” in their photon trajectory. The compounds appear to be excellent candidates for applications at the single molecule level, for example, as FRET labels.     

LOCAL ELECTRIC FIELD EFFECT ON THE CHLOROPHYLL FLUORESCENCE

Abstract. Polarized absorption and fluorescence of chlorophyll a and bacteriochlorophyll solutions in nematic liquid crystal mixtures have been studied in the presence of an external electric field.
The electric field caused a reorientation of the pigment molecules as concluded from changes in the polarized absorption. However, no correlation was found between the change in the polarized absorption and the change in the polarized fluorescence as a function of the field strength. The field influence was much stronger than expected only from the molecular orientation. The fluorescence polarized parallel to the direction of the liquid crystal was found to increase, whereas the similarly polarized absorption decreases. As a whole, the fluorescence yield significantly increased. It is suggested that the additional electric field is reinforced by a local field, most probably due to a protonation of the liquid crystal molecules.
Charged solvent molecules are reoriented in an external electric field which changes the local electric field acting on chlorophylls. Similar changes in CHI fluorescence yield due to local electric field can be created in vivo by the shift of charged molecules present in surrounding pigments. Such effects can be at least partially responsible for slow induction of fluorescence phenomena.     

Energy transfer and fluorescence quenching in complexes of polymethine dyes with human serum albumin

Electronic excitation energy transfer (EET) between molecules of polymethine dyes bound to human serum albumin (HSA) has been established and studied by absorption and fluorescence spectroscopy as well as by fluorescence decay measurements. In this system, excitation of the donor dye molecule leads to fluorescence of the acceptor dye molecule, both bound to HSA, with donor fluorescence quenching by the acceptor. The short distance between the donor and the acceptor (25-28 A) revealed from the Forster model of EET as well as some spectroscopic data show that both molecules are probably located in the same binding domain of HSA. The role of HSA is to bring donor and acceptor molecules together to a distance adequate to achieve EET as well as to increase the donor and acceptor fluorescence quantum yields. Efficient quenching of the intrinsic HSA fluorescence by some polymethine dyes (oxonols) is observed. The experimental results fit well a model for the formation of a weakly fluorescent dye-HSA complex; the quencher in this complex should be located in the immediate vicinity of the HSA fluorophore group (Trp(214)).     

Acidity effects on the fluorescence properties and adsorptive behavior of rhodamine 6G molecules at the air-water interface studied with confocal fluorescence microscopy

The effects of acidity on fluorescence originated from rhodamine 6G (R6G) molecules adsorbed at the air-water interface of extremely low-concentration aqueous solutions have been studied with confocal fluorescence microscopy. Similarities and differences in the observed acidity effects between R6G molecules at the interface and those in the bulk solution have been discussed. With increasing the subphase-pH from 1 to 6, height and frequency of photon bursts as well as intensity of the interface-originated fluorescence change in two steps, while bulk fluorescence changes in one step and a little change in the number of adsorbed R6G molecules is verified with surface tension measurements. The results suggest that there is an interface-specific equilibrium among the chemical forms of R6G molecules. Chemical forms contributing to the interface-originated fluorescence above pH 5 are discussed.     

Photophysics of self-assembled monolayers of a π-conjugated quinquethiophene derivative

The photophysics of fully and partially covered self-assembled monolayers (SAMs) of a quinquethiophene (5T) derivative have been investigated. The monolayers behave as H-aggregates. The fluorescence of fully covered SAMs is weak and red-shifted, and the extinction is blue-shifted as compared to that of single molecules. The fluorescence of partially covered SAMs is dominated by that of single molecules on the surface. The extinction spectra are similar for fully and partially covered monolayers, which show that even the smallest islands are H-aggregates. The extinction spectra furthermore closely resemble those for 5T single crystals, which demonstrates that in oligothiophene crystals the intermolecular interactions within one layer molecules are stronger than the interlayer electronic coupling.     

Surface properties of surfactant-free oil droplets dispersed in water studied by confocal fluorescence microscopy

The fluorescence spectrum of dye molecules, 4-(dicyanomethylene)-2-methyl-6-(p-dimethylaminostyryl)-4H-pyron (DCM), dissolved in surfactant-free n-decane droplets (average diameters of approximately 300 and approximately 2000 nm) dispersed in water was measured by a confocal microscope. The fluorescence spectra for 300- and 2000-nm droplets are found to exhibit a peak at 640 and 625 nm, respectively, and the peak red shifts with a decrease in the droplet diameter (solvatochromic shift of DCM molecules). It is concluded that (1) DCM molecules are located in a polar surface region of n-decane droplets and (2) the polarity increases with decreasing the droplet diameter.     

Study on the sonodynamic activity and mechanism of promethazine hydrochloride by multi-spectroscopic techniques

In this paper, the bovine serum albumin (BSA) was selected as a target molecule, the sonodynamic damage to protein in the presence of promethazine hydrochloride (PMT) and its mechanism were studied by the means of absorption, fluorescence and circular dichroism (CD) spectra. The results of hyperchromic effect of absorption spectra and quenching of intrinsic fluorescence spectra indicate that the ultrasound-induced BSA molecules damage is enhanced by PMT. The damage degree of BSA molecules increases with the increase of ultrasonic irradiation time and PMT concentration. The results of synchronous fluorescence, three-dimensional fluorescence and CD spectra confirmed that the synergistic effects of ultrasound and PMT induced the damage of BSA molecules. The results of oxidation-extraction photometry with several reactive oxygen species (ROS) scavengers indicate that the damage of BSA molecules could be mainly due to the generation of ROS and both (1)O(2) and OH are the important mediators of the ultrasound-induced BSA molecules damage in the presence of PMT.     

FT-Raman spectroscopy of biological molecules

Raman spectroscopy of biological molecules is often very difficult if not impossible due to a large fluorescence background from absorbing species, either from the molecule itself or an impurity. Photobleaching is occasionally successful in photochemically removing fluorescent impurities, but the majority of samples are not responsive to such treatment. Resonance enhancement of an absorbing species allows acquisition of Raman spectra in spite of competing fluorescence. However, the resonance Raman spectrum is characteristic of the chromophore only and little structural information is obtained from the spectrum about other parts of the molecule which are not resonantly enhanced. The newly developed technique of FT-Raman spectroscopy proves to be a solution to both of these problems for biological materials. Excitation with infrared wavelengths prevents electronic absorptions which give rise to fluorescence. In addition, the obtained spectra are completely nonresonant, allowing detection of vibrational modes of all parts of the molecule including the chromophore. We will present nonresonant, fluorescence free spectra of a range of biologically significant molecules including phospholipids and porphyrins.     

Applications of Sensitized Fluorescence in Chemiluminescence: A Review

This paper presents an overview of the applications of sensitized fluorescence in chemiluminescence. The enhancement of fluorescence of lanthanide ions after formation of stable complexes with organic molecules (type A luminescence) or of organic molecules after formation of stable complexes with inorganic ions (type B luminescence) has been extensively applied for the sensitive determination of a wide variety of analytes but not thoroughly investigated for chemiluminescence applications. As chemiluminescent reactions can be used successfully for the excitation of fluorophores, all sensitized fluorescing complexes are expected to be excited by these reactions. The analytical applications of sensitized fluorescence in chemiluminescence are briefly discussed and presented. Suggestions for further work are also included.     

Unique hydrophobic interactions of pyrene in aqueous solution as effected by polyelectrolytes and surfactants

Pyrene substituents covalently bounded to polyelectrolytes show not only excited-state interactions but also unique ground-state interactions in aqueous solution. The pyrene moieties in pyrenesubstituted ionic molecules also show these interactions when aqueous solutions of these molecules are treated with polyelectrolytes or surfactants well below their critical micelle concentrations. These hydrophobic interactions are revealed by changes in absorption, fluorescence, and excitation spectra. The well-resolved vibrational bands in the absorption and excitation spectra of pyrene become somewhat diffuse, whereas monomer fluorescence is reduced and replaced by excimer fluorescence. The rationale for these results is that the pyrene moieties in these ionic solutions seek out hydrophobic locations on the polyelectrolytes or surfactants, where pyrene aggregation is responsible for these interactions and the corresponding changes in spectra.     

Effect of the solvent composition in methanol-pentane and methanol-acetonitrile mixtures on the spectral and luminescent properties of 1,2-dihydroquinolines

The dependence of absorption and fluorescence spectra, quantum yields, and lifetimes of fluorescence on the solvent composition in the MeOH-C₅H₁₂ and MeOH-MeCN mixtures was studied for 2,2,4,6-tetramethyl-1,2-dihydroquinoline (TMDHQ). The variations in the parameters of deconvolution of the absorption and fluorescence spectra by the Gaussian functions in the MeOH-C₅H₁₂ mixtures of various compositions indicate the specificity of methanol clustering in saturated hydrocarbons and hydrogen bonding between TMDHQ and the methanol clusters of different compositions. At low MeOH concentrations (∼0.2 vol %), TMDHQ molecules are practically completely bound with the MeOH molecules by hydrogen bonds. In the MeOH-MeCN mixtures, the changes in the absorption and fluorescence spectra are observed at a substantially higher MeOH concentration (≥10 vol %) and monotonically change at the further increase in the MeOH concentration that is caused by the peculiarities of MeOH clustering in acetonitrile and the distribution of the TMDHQ molecules between the solvent components. At 50–95 vol % of MeOH in the mixture with MeCN, the fluorescence decay kinetics is described by the biexponential curve with the lifetime of the major component (τ₁) decreasing from 7.5 to 1.1 ns in pure MeCN and MeOH, respectively, and the lifetime of the minor component τ₂ ≈ 4 ns corresponding to the fluorescence lifetime in the solution containing 50 vol % MeOH. This indicates the existence of the free TMDHQ molecules, which are not bound with MeOH molecules or their clusters.