STM studies of single molecules: molecular orbital aspects

As a fundamental and frequently referred concept in modern chemistry, the molecular orbital plays a vital role in the science of single molecules, which has become an active field in recent years. For the study of single molecules, scanning tunneling microscopy (STM) has been proven to be a powerful scientific technique. Utilizing specific distribution of the molecular orbitals at spatial, energy, and spin scales, STM can explore many properties of single molecule systems, such as geometrical configuration, electronic structure, magnetic polarization, and so on. Various interactions between the substrate and adsorbed molecules are also understood in terms of the molecular orbitals. Molecular engineering methods, such as mode-selective chemistry based on the molecular orbitals, and resonance tunneling between the molecular orbitals of the molecular sample and STM tip, have stimulated new advances of single molecule science.     

Ground state of the Si(0 0 1) surface revisited—is seeing believing?

The stable structure of clean Si(0 0 1) surface around 100 K is the c(4 × 2) arrangement constructed by buckled dimers. This structure was widely accepted as the ground state in 1990’s. The view was challenged at the beginning of 2000’s by the observations of a p(2 × 1) structure below 20 K with scanning tunneling microscopy (STM). Recent experimental studies confirm that the dimer is buckled below 30 K. Large tip–surface interaction, and/or tunneling current induced dynamical effect are now experimentally evident in the STM images at low temperatures. Moreover, a current induced structure transformation is discovered below 40 K even in the study by low energy electron diffraction. Dynamical electronic and vibrational effects are theoretically studied for accounting the observation of a p(2 × 1) structure below 20 K.     

Submolecular imaging of chloronitrobenzene isomers on Cu(111)

We compare computer simulations to experimental scanning tunneling microscopy (STM) images of chloronitrobenzene molecules on a Cu(111) surface. The experiments show that adsorption induced isomerization of the molecules takes place on the surface. Furthermore, not only the submolecular features can be seen in the STM images, but different isomers can also be recognized. The Todorov-Pendry approach to tunneling produces simulated STM images which are in good accordance with the experiments. Alongside with STM simulations in a tight-binding basis, ab initio calculations are performed in order to analyze the symmetry of relevant molecular orbitals and to consider the nature of tunneling channels. Our calculations show that while the orbitals delocalized to the phenyl ring create a relatively transparent tunneling channel, they also almost isolate the orbitals of the substitute groups at energies which are relevant in STM experiments. These features of the electronic structure are the key ingredients of the accurate submolecular observations.     

SURFACE STRUCTURE DETERMINATION BY STM vs LEED

Scanning tunneling microscopy has been developed, among other applications, into a powerful surface structural tool. Over time, it has become more apparent that theoretical modeling of the STM image is often necessary to reliably extract atomic positions. We here review recent advances in this direction and illustrate with several examples that geometrical information is mixed not only with electronic structure information and corresponding tip properties, but also with tunneling effects like interference between multiple tunneling channels.     

The specific behavior of MxTiS2 (x=1/4, M=Fe, Ni) surfaces probed by scanning microscopy (STM and AFM)

The scanning tunneling microscopy (STM) and atomic force microscopy (AFM) images of two model systems M_1/4TiS₂ (M=Fe, Ni) were interpreted on the basis of the partial electron density ρ(r,E_F) and total electron density ρ(r) of a slab which consists of seven (0 0 1) M_1/4TiS₂ atomic layers. The geometrical structure of the slabs investigated was optimized. Electronic structure calculations were performed using the ab initio periodic LCAO-DFT method. The top sulfur plane (0 0 1) imaged gives a different answer depending both of the compounds considered and the scanning probe microscopic instrument used. Theoretical calculations have then been carried out in order to improve our knowledge of the surface electronic structure of these inserted compounds and attempts are made to rationalize the experimental data. A specific behavior of the surface electronic structure in comparison with the 3D compounds (depending on the guest specie inserted) is shown.     

铂电极在氯化钾溶液中电化学行为的STM和EMUV/VRS方法研究

用电化学现场扫描遂道显微镜(in situ STM)和电化学调制紫外可见反射光谱(EMUV/VRS)技术研究了铂电极在KCl溶液中的电化学行为, 结果表明,在KCl溶液中,Pt电极阳极氧化/阴极还原过程为阳极溶解/阴极沉积过程,阳极溶解可能经历吸附的Cl~-离子与Pt表面原子生成表面铂氯化物步骤,实验表明STM比EMUV/VRS具有更高的空间分辨率。     

STM study of morphology and electron transport features in cytochrome c and nanocluster molecule monolayers.

The morphology and electron tunneling through single cytochrome c and nanocluster Pt(5)(CO)(7)[P(C(6)H(5))](4) molecules organized as monolayer Langmuir-Blodgett (LB) films on graphite substrate have been studied experimentally using scanning tunneling microscopy (STM) and spectroscopy techniques with sub-nanometer spatial resolution in a double barrier tunnel junction configuration STM tip-monomolecular film-conducting substrate at ambient conditions. STM images of the films revealed globular structures with characteristic diameters (approximately 3.5 nm for the protein molecule and approximately 1.2 nm for the nanocluster). The spectroscopic study by recording the tunneling current-bias voltage (I-V) curves revealed tunneling I-V characteristics with features as steps of different width and heights that are dependent on the STM tip position over the molecule in the monolayer, giving evidence for sequential discrete electron-tunneling effects with the combination of the single electron Coulomb-charging energy and the electronic energy level separation (molecular spectrum) in such immobilized metalloprotein and nanocluster structures that can be of interest for the development of bioelectronic and hybrid functional nanosystems.     

Investigation of negative differential resistance properties of self-assembled dipyridinium using STM

Recently, research on conducting molecules containing thiol functional groups such as benzenethiol has been progressing [X. Xiao, B. Xu, N.J. Tao, Nano Lett. 4 (2004) 267]. This conducting molecule is applicable to the study of the negative differential resistance (NDR) and switching properties of logic device. The 4-{4[4-(4-{1-[4-(4-acetylsulfanyl-phenylethynyl)-phenyl]-2,6-diphenyl-pyridinium-4-yl}-phenyl)-2,6-diphenyl-pyridinium-1-yl]-phenylethynyl}-phenylthioacetate (dipyridinium) molecule contains thiol functional groups such as benzenethiol. Thus, we have studied an NDR property of a dipyridinium molecule using the self-assembly method in scanning tunneling microscopy (STM). The Au substrate was exposed to a 1 mM solution of 1-dodecanethiol in ethanol for 24 h to form a monolayer. After thorough rinsing of the sample, it was exposed to a 0.1 μM solution of dipyridinium in dimethylformamide (DMF) for 30 min. After the assembly, we measured the electrical properties of the self-assembly monolayers (SAMs) using ultra high vacuum scanning tunneling microscopy (UHV-STM) and scanning tunneling spectroscopy (STS). As a result, we confirmed the properties of NDR in a negative region at −1.67 V and a positive region at 1.78 V. The energy gap (E_g) was found to be 3.12 eV [C. Arena, B. Kleinsorge, J. Robertson, W.I. Milne, M.E. Welland, J. Appl. Phys. 85 (1999) 1609]. This molecule is applicable to the fabrication of molecular junctions.     

The puzzle of contrast inversion in DNA STM imaging

DNA has been at the center of an imaging effort since the invention of the scanning tunneling microscope (STM). In some of the STM imaging reports the molecules appeared with negative contrast, i.e., "submerged" under the metal background and darker. We demonstrate the phenomenon of contrast inversion in DNA STM imaging by controlled and spontaneous contrast inversions and by the dependence of the DNA apparent height with respect to the surface on the imaging bias voltage. Using these characterizations, we formulate a model explaining the above phenomenon by resonant tunneling through virtual states in the vacuum between the STM tip and the DNA molecule.     

β-联碳酰基类衍生物有序自组装膜的STM研究

在大气条件下, 利用扫描隧道显微镜研究了四个β-联碳酰基类衍生物在高定向裂解石墨(HOPG)表面的自组装结构. 研究分子的结构中均包含π电子共轭体系和烷基链. 实验研究了分子结构对自组装结构的影响, 并利用分子结构的变化实现了自组装膜结构的调控. 结果表明, 在甲苯溶剂中制备的这些自组装结构均长程有序, 分子间氢键和偶极相互作用是影响自组装膜结构变化的重要因素.     

An in situ STM and DTS study of the extremely pure [EMIM]FAP/Au(111) interface

Herein the structure of the interfacial layer between the air- and water-stable ionic liquid 1-ethyl-3-methylimidazolium tris(pentafluoroethyl)trifluorophosphate ([EMIM]FAP) and Au(111) is investigated using in situ scanning tunneling microscopy (STM), distance tunneling spectroscopy (DTS) and cyclic voltammetry (CV) measurements. The in situ STM measurements reveal that structured interfacial layers can be probed in both cathodic and anodic regimes at the IL/Au(111) interface. The structure of these layers is dependent on the applied electrode potential, the number of subsequent STM scans and the scan rate. Furthermore, first DTS results show that the tunneling barrier during the 1st STM scan does not seem to change significantly in the cathodic potential regime between the ocp (-0.2 V) and -2.0 V.     

STM studies on porphyrins

Porphyrins are promising components to be used in molecular electronics due to their rich electronic/photonic properties. Preparation of supramolecular architectures of porphyrins on solid surfaces would constitute a basis for further development toward molecular circuitry or other constructs for molecular electronics applications. Assemblies on surfaces can be probed with scanning tunneling microscopy (STM) at submolecular resolutions to reveal the arrangements and conformations of molecules on an individual molecule basis. The electronic characteristics within a single porphyrin molecule can also be probed by means of the same technique. This review summarizes the status quo of STM studies on porphyrins on surfaces with regard to their assemblies, structures, and electronic properties at the single molecule level.     

Expression of Chirality by Achiral Coadsorbed Molecules in Chiral Monolayers Observed by STM

The supramolecular packing mode of physisorbed monolayers built up by chiral isophthalic acid derivatives and coadsorbed achiral solvent molecules was imaged at the liquid/graphite interface with scanning tunneling microscopy (STM). The picture on the right shows the submolecularly resolved STM image of an enantiomorphous domain composed of the R enantiomer of the isophthalic acid derivative studied and 1-heptanol molecules; the latter express the chirality of the monolayer. Upon adsorption a racemic mixture is separated into enantiomorphous domains.     

电化学STM技术在金属腐蚀科学中的应用及研究进展

本文介绍了电化学STM在金属腐蚀电化学研究领域的技术优势.其最大特点是可以在金属腐蚀环境中和原子/分子水平上,实时、原位、三维空间观察,并可以通过电位控制表面电极过程.综述了电化学STM在钝化膜结构、缓蚀剂的自组装膜、金属表面原子的活性溶解等揭示腐蚀缓蚀机理的研究领域中所起的重要作用以及最新研究进展.     

STM studies on adsorbed liquid crystal on HOPG

Ｓｃａｎｎｉｎｇｔｕｎｎｅｌｉｎｇｍｉｃｒｏｓｃｏｐｅ(ＳＴＭ)ｈａｓｒｅｃｅｎｔｌｙｂｅｅｎａｐｐｌｉｅｄｔｏｔｈｅｓｔｕｄｙｏｆｔｈｅａｄｓｏｒｐｔｉｏｎｏｆｏｒｇａｎｉｃａｎｄｂｉｏｌｏｇｉｃａｌｍｏｌｅｃｕｌｅｓｉｎｖａｒｉｏｕｓｅｎｖｉｒｏｎｍｅｎｔｓ,ｉｎｃｌｕｄｉｎｇｌｉｑｕｉｄｃｒｙｓｔａｌ(ＬＣ),ｏｎｓｕｒｆａｃｅ.Ｉｎｐａｒｔｉｃｕｌａｒ,4＿ｎ＿ａｌｋｙｌ4′ｃｙａｎｏｂｉｐｈｅｎｙｌｓ(ｍＣＢ,ｗｈｅｒｅｍｉｓｔｈｅｎｕｍｂｅｒｏｆｃａｒｂｏｎｓｉｎｔｈｅａｌｋｙｌｇｒｏｕｐ)ｏｎ…     

Deconvolution of STM images using entropy as a regularization functional

The Maximum Entropy approach is applied to restore and sharpen scanning tunneling microscopy (STM) images with atomic resolution. Based on the STM theory of Tersoff and Hamann the process of data acquisition can be approximated by the convolution of a localised atomic density of states (i.e. narrow spots in the reconstruction) of the sample and a Gaussian resolution function which limits the resolution. In STM practice a good and robust estimation of the atomic core positions is necessary for different reasons, such as to be able to calculate the characteristics of the atomic lattice or to study non-periodicities.     

Inelastic electron tunneling spectroscopy by STM of phonons at solid surfaces and interfaces

Inelastic electron tunneling spectroscopy (IETS) combined with scanning tunneling microscopy (STM) allows the acquisition of vibrational signals at surfaces. In STM-IETS, a tunneling electron may excite a vibration, and opens an inelastic channel in parallel with the elastic one, giving rise to a change in conductivity of the STM junction. Until recently, the application of STM-IETS was limited to the localized vibrations of single atoms and molecules adsorbed on surfaces. The theory of the STM-IETS spectrum in such cases has been established. For the collective lattice dynamics, i.e., phonons, however, features of STM-IETS spectrum have not been understood well, though in principle STM-IETS should also be capable of detecting phonons. In this review, we present STM-IETS investigations for surface and interface phonons and provide a theoretical analysis. We take surface phonons on Cu(1?1?0) and interfacial phonons relevant to graphene on SiC substrate as illustrative examples. In the former, we provide a theoretical formalism about the inelastic phonon excitations by tunneling electrons based on the nonequilibrium Green’s function (NEGF) technique applied to a model Hamiltonian constructed in momentum space for both electrons and phonons. In the latter case, we discuss the experimentally observed spatial dependence of the STM-IETS spectrum and link it to local excitations of interfacial phonons based on ab-initio STM-IETS simulation.     

Nonlinear electrical dipolar switching at single molecular scale

At the single molecular scale (less than 2 Å × 2 Å × 9.8 Å), the nonlinear electrical dipolar switching behavior from crystalline two-monolayer polyvinylidene fluoride films was measured using a scanning tunneling microscope (STM). The atomic structure of the polymer chain was clearly imaged by the STM. The nonlinear switching behavior at the single molecular scale appears as the hysteresis in the tunneling current–voltage relationship with switching onset voltage of 0.19 V/monomer. The nonlinear dipolar switching behavior at the single molecular scale has many potential applications including single molecular scale switching devices and re-writable non-volatile memories.     

Deconvolution of STM images using entropy as a regularization functional

The Maximum Entropy approach is applied to restore and sharpen scanning tunneling microscopy (STM) images with atomic resolution. Based on the STM theory of Tersoff and Hamann the process of data acquisition can be approximated by the convolution of a localised atomic density of states (i.e. narrow spots in the reconstruction) of the sample and a Gaussian resolution function which limits the resolution. In STM practice a good and robust estimation of the atomic core positions is necessary for different reasons, such as to be able to calculate the characteristics of the atomic lattice or to study non-periodicities.     

Adsorption of atomic hydrogen on ZnO(1010): STM study

The adsorption of atomic hydrogen on a single crystal ZnO(1010) surface has been studied by scanning tunneling microscopy (STM) under ultrahigh vacuum conditions at room temperature and at elevated temperatures. High resolution STM images indicate that a well-ordered (1x1) H adlayer is formed on the ZnO(1010) surface. The STM data strongly indicate that the hydrogen adsorbs on top of the oxygen atoms forming hydroxyl species. Scanning tunneling spectroscopy (STS) studies reveal a H atom induced metallization at room temperature. In contrast to the clean surface for the hydrogen-covered surface distinct defects structures consisting of missing O and Zn atoms could be identified.