The Effect of Gadolinium Doping in [13C6,2H7]Glucose Formulations on 13C Dynamic Nuclear Polarization at 3.35 T

The promise of hyperpolarized glucose as a non-radioactive imaging agent capable of reporting on multiple metabolic routes has led to recent advances in its dissolution-DNP (dDNP) driven polarization using UV-light induced radicals and trityl radicals at high field (6.7 T) and 1.1 K. However, most preclinical dDNP polarizers operate at the field of 3.35 T and 1.4–1.5 K. Minute amounts of Gd³⁺ complexes have shown large improvements in solid-state polarization, which can be translated to improved hyperpolarization in solution. However, this Gd³⁺ effect seems to depend on magnetic field strength, metal ion concentration, and sample formulation. The effect of varying Gd³⁺ concentrations at 3.35 T has been described for ¹³C-labeled pyruvic acid and acetate. However, it has not been studied for other compounds at this field. The results presented here suggest that Gd³⁺ doping can lead to various concentration and temperature dependent effects on the polarization of [¹³C₆,²H₇]glucose, not necessarily similar to the effects observed in pyruvic acid or acetate in size or direction. The maximal polarization for [¹³C₆,²H₇]glucose appears to be at a Gd³⁺ concentration of 2 mM, when irradiating for more than 2 h at the negative maximum of the DNP intensity profile. Surprisingly, for shorter irradiation times, higher polarization levels were determined at 1.50 K compared to 1.45 K, at a [Gd³⁺]=1.3 mM. This was explained by the build-up time constant and maximum at these temperatures.     

Conformational Study of 8—C—glucosyl—prunetin by Dynamic NMR Spectroscopy

By means of variable temperature NMR spectra,conformation of 8-C-glucosyl prunetin, isolated from the leaves of Dalbergia hainanensis (Leguminosae), was studied. The restricted rotation around the C(sp^3)-C(sp^2) bond in the C-glucosides isoflavonoid results in two main conformers (syn and anti). With the help of MM calculation, the preferred conformation A has H-1″ gauche to the 7-OCH3. The barrier to rotation was 18.1 kcal/mol. This result agrees with the calculated value 16.2 kcal/mol of free energy of activation for the interconversion between the conformers.     

Hyperpolarized 13C Magnetic Resonance Imaging of Fumarate Metabolism by Parahydrogen-induced Polarization: A Proof-of-Concept in vivo Study

Hyperpolarized [1-¹³C]fumarate is a promising magnetic resonance imaging (MRI) biomarker for cellular necrosis, which plays an important role in various disease and cancerous pathological processes. To demonstrate the feasibility of MRI of [1-¹³C]fumarate metabolism using parahydrogen-induced polarization (PHIP), a low-cost alternative to dissolution dynamic nuclear polarization (dDNP), a cost-effective and high-yield synthetic pathway of hydrogenation precursor [1-¹³C]acetylenedicarboxylate (ADC) was developed. The trans-selectivity of the hydrogenation reaction of ADC using a ruthenium-based catalyst was elucidated employing density functional theory (DFT) simulations. A simple PHIP set-up was used to generate hyperpolarized [1-¹³C]fumarate at sufficient ¹³C polarization for ex vivo detection of hyperpolarized ¹³C malate metabolized from fumarate in murine liver tissue homogenates, and in vivo ¹³C MR spectroscopy and imaging in a murine model of acetaminophen-induced hepatitis.     

Real-Time Analysis of Folding upon Binding of a Disordered Protein by Using Dissolution DNP NMR Spectroscopy

The kinase inhibitory domain of the cell cycle regulatory protein p27^Kip1 (p27) was nuclear spin hyperpolarized using dissolution dynamic nuclear polarization (D-DNP). While intrinsically disordered in isolation, p27 adopts secondary structural motifs, including an α-helical structure, upon binding to cyclin-dependent kinase 2 (Cdk2)/cyclin A. The sensitivity gains obtained with hyperpolarization enable the real-time observation of ¹³C NMR signals during p27 folding upon binding to Cdk2/cyclin A on a time scale of several seconds. Time-dependent intensity changes are dependent on the extent of folding and binding, as manifested in differential spin relaxation. The analysis of signal decay rates suggests the existence of a partially folded p27 intermediate during the timescale of the D-DNP NMR experiment.     

1H and 13C NMR Spectroscopy of Stereoisomeric 2′-deoxy-C-Nucleosides

Eleven furanosyl 2′-deoxy-C-nucleosides with β-D-erythro, α-D-erythro and β-D-threo configurations have Been studied by IH and ¹³C NMR spectroscopy recorded in CDC1₃ and/or DMSO-d ₆. Results obtained indicate that each of the three stereoisomeric configurations studied are identifiable by ¹H and ¹³C NMR spectroscopy using a combination of coupling constant and chemical shift criteria.     

Characterization of Natural Chromite Samples from Ophiolite Complexes in the Philippines by 57Fe Mössbauer Spectroscopy

Mössbauer spectroscopy was applied to natural chromite samples from ophiolite complexes in the Philippines. Chemical and structural characterization of the chromite samples was also carried out using X-ray absorption fine structure (XAFS), X-ray diffraction (XRD) and X-ray fluorescence spectrometry (XRF). The Mössbauer spectra of the samples consisted of quadrupole doublets ascribable to Fe³⁺ in octahedral site, Fe³⁺ in tetrahedral site, and Fe²⁺ in tetrahedral site. The relative percentage of Fe³⁺ and Fe²⁺ ions suggested that these Philippine samples were formed under relatively high oxygen fugacity.     

Measurement of Nanometer Distances in Solution via 13C NMR Spectroscopy—Shrinking of Macrocycles with Increasing Temperature

For a molecular system, size and shape are of elementary importance for its function and properties. Therefore, the determination of distances within a molecule is essential. However, the commonly used methods are only suitable for distances smaller than 4 Å or larger than 15 Å. Here, we show that by incorporating a molecular spring, we can measure distances in macrocycles in the range of 10 Å using ¹³C NMR spectroscopy. The accuracy of the method also allows to determine the temperature dependence of the distances. In one case, we find a contraction of the length by almost 10 % upon heating. This shrinking due to heating can be considered as inverse thermoelasticity at the molecular level and is a previously completely overlooked phenomenon that can be used in the future as a tool to change the length and, thus, the function of a system.     

Aromatic 19F–13C TROSY—[19F, 13C]-Pyrimidine Labeling for NMR Spectroscopy of RNA

We present the access to [5-¹⁹F, 5-¹³C]-uridine and -cytidine phosphoramidites for the production of site-specifically modified RNAs up to 65 nucleotides (nts). The amidites were used to introduce [5-¹⁹F, 5-¹³C]-pyrimidine labels into five RNAs—the 30 nt human immunodeficiency virus trans activation response (HIV TAR) 2 RNA, the 61 nt human hepatitis B virus ϵ (hHBV ϵ) RNA, the 49 nt SAM VI riboswitch aptamer domain from B. angulatum, the 29 nt apical stem loop of the pre-microRNA (miRNA) 21 and the 59 nt full length pre-miRNA 21. The main stimulus to introduce the aromatic ¹⁹F–¹³C-spin topology into RNA comes from a work of Boeszoermenyi et al., in which the dipole-dipole interaction and the chemical shift anisotropy relaxation mechanisms cancel each other leading to advantageous TROSY properties shown for aromatic protein sidechains. This aromatic ¹³C–¹⁹F labeling scheme is now transferred to RNA. We provide a protocol for the resonance assignment by solid phase synthesis based on diluted [5-¹⁹F, 5-¹³C]/[5-¹⁹F] pyrimidine labeling. For the 61 nt hHBV ϵ we find a beneficial ¹⁹F–¹³C TROSY enhancement, which should be even more pronounced in larger RNAs and will facilitate the NMR studies of larger RNAs. The [¹⁹F, ¹³C]-labeling of the SAM VI aptamer domain and the pre-miRNA 21 further opens the possibility to use the biorthogonal stable isotope reporter nuclei in in vivo NMR to observe ligand binding and microRNA processing in a biological relevant setting.     

Dynamic structure of transmembrane α-helical fragments of bacteriorhodopsin in lipid bilayer characterized by 13C chemical shift tensor and hydrogen bond distance by REDOR NMR

Dynamic structure of [1-¹³C]Ala¹⁴, [¹⁵N]Ala¹⁸-labeled transmembrane fragment A (6–42) of bacteriorhodopsin in DMPC bilayer was examined by careful analysis of ¹³C chemical shift tensors of [1-¹³C]Ala¹⁴ residue and ¹⁵N–H⋯O¹³C hydrogen bond length, as determined by its side-band patterns and rotational echo double resonance method (REDOR), respectively. It was found that rigid-body motions of this helical segment, fluctuating with a time scale of 10⁻⁴ s and dominant at a temperature above 10°C [Biopolymers 58 (2001) 78], ceased at a temperature below 0°C, to give rise to a static spectral pattern similar to that of the solid sample. No evidence was obtained for the presence of the distorted α-helix form in the DMPC bilayer, in view of the similarity between the principal components of ¹³C chemical shift tensors of the lipid bilayer and the solid. Furthermore, accurate C⋯N interatomic distance was measured between ¹⁵N and ¹³C nuclei corresponding to the hydrogen bond length, ¹⁵N–H (Ala¹⁸)⋯O¹³C (Ala¹⁴), characteristic of the α-helix form by REDOR NMR. The C⋯N distance turned out to be 4.5 Å at −30°C, which is in good agreement with that in the solid state taking the ordinary α-helix as estimated from the ¹³C chemical shifts. This finding shows that there is no anomaly in the α-helix form in the lipid bilayer. In this connection, it is emphasized that the ¹³C C_β peak of Ala residue resonating at unusually lower field is a very unique probe to be able to detect the low frequency, local anharmonic motions of the order of 10⁻² s in the lipid bilayer.     

Determination of the orientational ordering of 4′-cyanophenyl-4-alkylbenzoates by 13C NMR

Abstract

The orientational ordering of three 4′-cyanophenyl-4-alkylbenzoates (with number of carbons in the alkyl chain, n = 6,7 and 8; hereafter abbreviated as n-CPBs) has been investigated by ¹³C NMR. The order parameters of different molecular segments in the nematic phase of the n-CPBs were determined by the two-dimensional technique of separated local field (SLF) spectroscopy combined with off-magic-axis, variable-angle spinning (VAS) of the sample. The carbon-13 chemical shifts for each carbon nucleus in these compounds were determined by slowly spinning the sample parallel to the applied magnetic field. The order parameters obtained from SLF/VAS studies are linearly related to the corresponding anisotropic carbon-13 chemical shifts. These results provide a convenient way to obtain the order parameters for other homologous members of this liquid crystal series by direct measurement of only their carbon-13 chemical shifts in conjunction with the observed linear relationship between order parameters and chemical shifts.     

13C NMR Spectroscopy on the Complexation of α-Cyclodextrin with 1-Alkanols and 1-Alkanoate Ions

Binding constants for -cyclodextrin ( -CD) complexes with 1- alkanols and 1- alkanoate ions were determined by analyzing changes ( ) in chemical shifts of guest ¹³C NMR signals with -CD concentration. The guests gave well-separated ¹³C NMR signals. The curve-fitting analyses of for individual carbons upon assumption of a simple 1:1 complexation gave virtually the same binding constants (K₁) in the cases of guests with relatively short alkyl chains, such as 1-propanol, 1-butanol, 1- pentanol , 1- butanoate , 1- pentanoate , and 1-hexanoate. However, thus obtained individual K₁ values were significantly different from one another, when the guests had relatively long alkyl chains such as 1- hexanol , 1- heptanol , and 1-octanoate. In these guests, satisfactorily consistent K₁ values were obtained by the curve-fitting analyses of for individual carbons upon an assumption that not only 1:1 but also 2:1 (host:guest) complexation occurs.     

Using Nuclear Magnetic Resonance and MS/MS Spectroscopy for the Identification of Brodimoprim Metabolites in Rat Urine

Brodimoprim,a trimethoprim analogue diaminopyrimidine, 2,4-diamino-5-(4'-bromo-3',5'-dimethoxybenzyl) pyrimidine, is a new inhibitor of bacterial dihydro folate reductases (OHFRs), it shows activity against a broad spectrum of Gram-positive and negative-bacteria. Recently we reported the results of the study on the metabolites of brodimoprim in vivo with SPE-NMR method (solid phase extraction coupled with nuclear magnetic resonance), five metabolites were detected in rat urine1. They were …     

“Direct” 13C Hyperpolarization of 13C-Acetate by MicroTesla NMR Signal Amplification by Reversible Exchange (SABRE)

Herein, we demonstrate “direct” ¹³C hyperpolarization of ¹³C-acetate via signal amplification by reversible exchange (SABRE). The standard SABRE homogeneous catalyst [Ir-IMes; [IrCl(COD)(IMes)], (IMes=1,3-bis(2,4,6-trimethylphenyl), imidazole-2-ylidene; COD=cyclooctadiene)] was first activated in the presence of an auxiliary substrate (pyridine) in alcohol. Following addition of sodium 1-¹³C-acetate, parahydrogen bubbling within a microtesla magnetic field (i.e. under conditions of SABRE in shield enables alignment transfer to heteronuclei, SABRE-SHEATH) resulted in positive enhancements of up to ≈100-fold in the ¹³C NMR signal compared to thermal equilibrium at 9.4 T. The present results are consistent with a mechanism of “direct” transfer of spin order from parahydrogen to ¹³C spins of acetate weakly bound to the catalyst, under conditions of fast exchange with respect to the ¹³C acetate resonance, but we find that relaxation dynamics at microtesla fields alter the optimal matching from the traditional SABRE-SHEATH picture. Further development of this approach could lead to new ways to rapidly, cheaply, and simply hyperpolarize a broad range of substrates (e.g. metabolites with carboxyl groups) for various applications, including biomedical NMR and MRI of cellular and in vivo metabolism.     

13C NMR Spectroscopy of N-Heterocyclic Carbenes Can Selectively Probe σ Donation in Gold(I) Complexes

The Dewar–Chatt–Duncanson (DCD) model provides a successful theoretical framework to describe the nature of the chemical bond in transition-metal compounds and is especially useful in structural chemistry and catalysis. However, how to actually measure its constituents (substrate-to-metal donation and metal-to-substrate back-donation) is yet uncertain. Recently, we demonstrated that the DCD components can be neatly disentangled and the π back-donation component put in strict correlation with some experimental observables. In the present work we make a further crucial step forward, showing that, in a large set of charged and neutral N-heterocyclic carbene complexes of gold(I), a specific component of the NMR chemical shift tensor of the carbenic carbon provides a selective measure of the σ donation. This work opens the possibility of 1) to characterize unambiguously the electronic structure of a metal fragment (LAu(I)^n+/0 in this case) by actually measuring its σ-withdrawing ability, 2) to quickly establish a comparative trend for the ligand trans effect, and 3) to achieve a more rigorous control of the ligand electronic effect, which is a key aspect for the design of new catalysts and metal complexes.     

Determination of Mecruy at Trace Level in Natural Water Samples by Hydride Generation Atomic Absorption Spectrophotometry after Cloud Point Extraction Preconcentration

Mercury as a heavy metal of high toxicity is one of the most harmful elements to human beings and other creatures. Since mercury concentration in natural water is low, proper preconcentration techniques are required to increase its concentration, lower it…     

Study of entangled network formation in concentrated solutions of polymer by ~(13)C NMR

Information about the exact location of topological and cohesional entanglements at molecular level has been obtained by 13C NMR relaxation analysis. The results show that about 20% of the carbon atoms in the main chain are entangled in the 25% (by weight) solution, which is independent of the content of the 1,2-segment in polybutadiene and of the kind of solvent. However, the entanglement of the carbon atone on the end group of the side chain is very weak, they behave as slipping freely at the junctions.     

Trimethylsilylation - Aid in NMR Analysis of Oligosaccharides. Assigment of 29Si and 13C NMR Spectra of Trimethylsilylated Methyl β-D-Xylobiosides by 2D NMR

The ¹H, ¹³C and ²⁹Si NMR spectra of methyl β-D-xylopyranoside and three methyl β-D-xylopyranosyl-β-D-xylopyranosides have been measured and assigned by two-dimensional NMR spectroscopy. According to the determined proton-proton coupling constants, the ring conformer ratio is essential ly the same in the studied compounds. The assigned chemical shifts provide correct substituent chemical shifts for assignments in the spectra of higher trimethylsilylated xylooligosaccharides. Heteronuclear chemical shift correlated 2D NMR spectroscopy is proven to be a usable experimental method for ²⁹Si NMR line assignment in carbohydrates. The assigned silicon shifts identify the site of glycosidation.     

Studies of Molecular Motions of Ocotillol-Type Saponins in Solution by ~(13)C Nuclear Magnetic Relaxation

In this paper, the fully anisotropicoverall tumbling motions and side groups internal rotation of ocotillol-type saponins separated from the leaves of Panax Quidquefolium L. are investigated by ~(13)C nuclear magnetic relaxation. The fully anisotropic overall tumbling motion model with methyl conformation jumps internal rotation among three equivalent sites is presented, and the spectral density function of this model is derived. The rotation rates for overall tumbling motions to ocotillol-type saponins (OTS) are computed by Woessner's fully anisotropic overall tumbling motion model, and the internal rotation rate and barrier for side groups in OTS are calculated using free diffusion internal rotation model, restriction diffusion internal rotation model and conformation jumps internal rotation model, respectively.     

Characterizations of Some N—Substituted—salicylhydrazide in Mixtures by NMR Diffusion Ordered Spectroscopy

1 INTRODUCTION Metallacrown has emerged as inorganic host molecules. There has been considerable interest in metallacrown chemistry owing to its potential applications in chemically modified electrodes, anion-selective separation agents, liquid-crystal precursors and magnetic materials[1]. Multidentate ligands which can bridge two metal ions are used to synthesize metallacrowns. The cyclic repetition of the ligand bridging two metal ions generates the macrocyclic metal cluster. In the c…     

Structural characterization of drawn (ethylene–vinyl alcohol) copolymer by high-resolution solid-state 13C NMR

High-resolution solid-state ¹³C NMR spectra of drawn (ethylene–vinyl alcohol) copolymer (EVOH) and their ¹³C spin-lattice relaxation times (T₁) were measured in order to elucidate the structure and dynamics of EVOH in the drawn state. It is found that the ¹³C chemical shift of the CH carbon for drawn EVOH moved upfield as compared with that of undrawn EVOH. Further, the mobility for the CH carbons of low molecular motion components are increased by drawing the EVOH sample. From these experimental results, the changes in the structure and dynamics of the drawn EVOH sample can be elucidated.