Water-soluble supramolecular porphyrin dimer: self-organization of mono(imidazolyl)-substituted Zn porphyrin to a special-pair type dimer in water

Tris(4-carboxylphenyl)-mono(N-methylimidazolyl)-substituted Zn porphyrin was synthesized as a precursor for a water-soluble supramolecular porphyrin dimer. The dimer formation was performed in a NaHCO₃ aq solution (pH 8.4) and phosphate buffer solutions (pH 7.4-9.0). The split Soret bands of Zn porphyrin observed in the absorption spectra clearly showed self-organization to a special-pair type slipped cofacial dimer via metal coordination of imidazole even in water.     

Photoinduced electron transfer and excitation energy transfer in directly linked zinc porphyrin/zinc phthalocyanine composite

Photoinduced electron transfer (ET) and excitation energy transfer (ENT) reactions in monomer and slipped-cofacial dimer systems of a directly linked Zn porphyrin (Por)-Zn phthalocyanine (Pc) heterodyad, ZnPc-ZnPor, were investigated by means of the picosecond and femtosecond transient absorption spectroscopies. In the dimer dyad system of two heterodyads connected through the coordination bond between two imidazolyl-substituted ZnPor bearing ZnPc, ZnPc-ZnPor(D), the rapid ENT from the ZnPor to ZnPc in the subpicosecond time region was followed by photoinduced charge separation (CS) and charge recombination (CR) with time constants of 47 and 510 ps, respectively. On the other hand in the monomer dyad system, no clear charge-separated state was observed although the CS with a time constant of 200 ps and CR with < or =70 ps were estimated. These results indicated that the dimer slipped-cofacial arrangement of pair porphyrins is advantageous for the effective production of the CS state. This advantage was discussed from the viewpoint of a decrease in the reorganization energy of the dimer relative to that of the monomer system. In addition, the electrochemical measurements indicated that the strong interaction between ZnPc and ZnPor moieties also contributed to the fast CS process despite the marginal driving force for the CS process. The dimer dyad of ZnPc-ZnPor provides full advantages in efficiencies of the light harvesting and the CS state production.     

Thermal dissociation of the protein homodimer ecotin in the gas phase

The influence of charge on the thermal dissociation of gaseous, protonated, homodimeric, protein ecotin ions produced by nanoflow electrospray ionization (nanoES) was investigated using the blackbody infrared radiative dissociation technique. Dissociation of the protonated dimer, (E₂ + nH)ⁿ⁺ E₂ⁿ⁺ where n = 14–17, into pairs of monomer ions is the dominant reaction at temperatures from 126 to 175 °C. The monomer pair corresponding to the most symmetric charge distribution is preferred, although 50–60% of the monomer product ions correspond to an asymmetric partitioning of charge. The relative abundance of the different monomer ion pairs produced from E₂¹⁴⁺, E₂¹⁵⁺, and E₂¹⁶⁺ depends on reaction time, with the more symmetric charge distribution pair dominating at longer times. The relative yield of monomer ions observed late in the reaction is independent of temperature indicating that proton transfer between the monomers does not occur during dissociation and that the different monomer ion pairs are formed from dimer ions which differ in the distribution of charge between the monomers. For E₂¹⁷⁺, the yield of monomer ions is independent of reaction time but does exhibit slight temperature dependence, with higher temperatures favoring the monomers corresponding to most symmetric charge distribution. The charge distribution in the E₂¹⁵⁺ and E₂¹⁶⁺ dimer ions influences the dissociation kinetics, with the more asymmetric distribution resulting in greater reactivity. In contrast, the charge distribution has no measurable effect on the dissociation kinetics and energetics of the E₂¹⁷⁺ dimer.     

Electrochemical studies on stacked-ring silicon phthalocyanines

Voltammetric and spectroscopic data on monomeric, dimeric, and trimeric t-butyldimethylsilyl silicon phthalocyanines (SiPc) are compared. These phthalocyanines are bonded through axial OSiO linkages with an interplanar spacing of about 0.34 nm. The through-space orbital interactions which result from the cofacial orientation of the SiPc rings causes a large stabilization of the one-electron oxidation product of the dimer and trimer SiPc compared to the monomer SiPc and a slight destabilization of their one-electron reduction products. The electrochemical reactions have significance in correlation with the conductivity, photoconductivity, and solid-state orientation of phthalocyanines which aggregate or polymerize.     

Synthesis of meso-5-azaindolyl-appended Zn(II) porphyrins via Pd-catalyzed annulation

Pd-catalyzed annulation reaction of meso-hexynyl Zn(II) porphyrin with 4-amino-3-iodopyridine efficiently provides meso-3-(5-azaindolyl)-substituted Zn(II) porphyrin as a major product, which assembles to form a slipped cofacial dimer by the complementary coordination of the pyridine moiety to the Zn(II) center. 2-iodoaniline and 2-iodophenol also undergo this [3 + 2] annulation with the meso-hexynyl Zn(II) porphyrin to furnish meso-indolyl- and benzofuranyl-substituted Zn(II) porphyrins, respectively.     

Dimeric assemblies from 1,2,3-triazole-appended Zn(II) porphyrins with control of NH-tautomerism in 1,2,3-triazole

Cu(I)-catalyzed 1,3-dipolar cycloaddition of meso-ethynyl Zn(II) porphyrin with benzyl azide efficiently provides meso-1-benzyl-1H-1,2,3-triazolyl Zn(II) porphyrin, which assembles to form a slipped cofacial dimer by the complementary coordination of the triazole nitrogen atom at the 3-position to the zinc center of a second porphyrin moiety both in the solid and solution states. Removal of the benzyl protection and introduction of a 2-ethoxycarbonylphenyl moiety greatly stabilize the dimeric assembly through an additional hydrogen bonding interaction between the NH proton of 2H-1,2,3-triazole and the carbonyl oxygen.     

Photodissociation of the water dimer: three-dimensional quantum dynamics studies on diabatic potential-energy surfaces

The results are presented of three-dimensional model studies of the photodissociation of the water dimer following excitation in the first absorption band. Diabatic potential-energy surfaces are used to investigate the photodissociation following excitation of the hydrogen bond donor molecule and of the hydrogen bond acceptor molecule. In both cases, the degrees of freedom considered are the two OH-stretch modes of the molecule being excited, and the dimer stretch vibration. The diabatic potentials are based on adiabatic potential surfaces computed with the multireference configuration-interaction method, and the dynamics of dissociation was studied using the time-dependent wave-packet method. The dynamics calculations yield a donor spectrum extending over roughly the same range of frequencies as the spectrum of the water monomer computed at the same level of theory. The acceptor spectrum has the same width as the monomer spectrum, but is shifted to the blue by 0.4-0.5 eV. The dimer spectrum obtained by averaging the donor and the acceptor spectrum is broader than the monomer spectrum, with the center of the dimer first absorption band shifted to the blue by about 0.2 eV relative to the monomer band. Our reduced dimensionality calculations do not find the red tail predicted for the dimer first absorption band by Harvey et al. [J. Chem. Phys. 109, 8747 (1998)]. This conclusion also holds if preexcitation of the dimer stretch vibration with one or two quanta is considered.     

Synthesis, structure, and properties of benzoquinone dimer and trimers bearing t-Bu substituents

Highly soluble and stable quinone dimer and trimers were successfully yielded by introduction of t-Bu substituents. In X-ray structure analysis, the dimer quinone moiety was distorted into the boat shape, which was clarified by MO calculations. X-ray and UV/vis studies indicated that the covalently linked quinone moieties bear a large torsional angle. Nevertheless, the reduction potentials rose significantly with the order of monomer < dimer < trimer, indicating that the negative charge was efficiently delocalized within the radical anions.     

Intramolecular excimer formation for covalently linked boron dipyrromethene dyes

Photophysical properties have been recorded for a small series of covalently linked, symmetrical dimers formed around boron dipyrromethene (Bodipy) dyes. Within the series, a control dimer is unable to adopt a cofacial arrangement because of steric factors, while a second dimer possesses sufficient internal flexibility to form the cofacial geometry but with little overlap of the Bodipy units. The other three members of the series take up a cofacial arrangement with varying bite angles between the planes of the two Bodipy units. Fluorescence quantum yields and excited-state lifetimes indicate differing extents of electronic interaction between the two Bodipy head-groups, but only the compound with the smallest bite angle exhibits excimer emission in solution under ambient conditions. Time-resolved fluorescence studies show dual-exponential decay kinetics in each case, while temperature-dependent emission studies reveal reversible coupling between monomer and lower-energy excimer states. The latter is weakly fluorescent, at best, and is seen clearly only for dimers having small bite angles. The application of high pressure to dilute solutions of these dimers promotes excimer formation in certain cases and leads to loss of monomer-like fluorescence. Under high pressure, excimer emission is more evident, and the overall results can be discussed in terms of subtle structural rearrangements that favor excimer formation.     

Effects of hydrogen-bond and cooperativity in the vibrational spectra of Luminol

Luminol, one of the most popular electrochemiluminescence systems used in forensic chemistry, proved to be a suitable system to study the importance of cooperativity in hydrogen-bond chains. The computational pairwise approach PiMM was applied to the system and a thorough band assignment was accomplished. Hydrogen-bond and hydrogen-bond cooperativity effects were assessed through a confrontation of energy, geometry and wavenumber changes from monomer and dimer on one hand and dimer and “full-cluster” trimer on the other. For the first time the PiMM method was also used to successfully predict changes in band relative intensities.     

Fluorescence imaging of the oxidative desorption of a BODIPY-alkyl-thiol monolayer coated Au bead

The reductive and oxidative desorption of a BODIPY labeled alkylthiol self-assembled monolayer (SAM) on Au was studied using electrochemical methods coupled with fluorescence microscopy and image analysis procedures to monitor the removal of the adsorbed layer. Two SAMs were formed using two lengths of the alkyl chain (C10 and C16). The BODIPY fluorescent moiety used is known to form dimers which through donor-acceptor energy transfer results in red-shifted fluorescence. Fluorescence from the monomer and dimer were used to study the nature of the desorbed molecules during cyclic step changes in potential. The reductive desorption was observed to occur over a small potential window (0.15 V) signified by an increase in capacitance and in fluorescence. Oxidative readsorption was also observed through a decrease in capacitance and a lack of total removal of the fluorescent layer. Removal by oxidative desorption occurred at positive potentials over a broad potential range near the oxidation of the bare Au. The resulting fluorescence showed that the desorbed molecules remained near the electrode surface and were not dispersed over the 20 s waiting time. The rate of change of the fluorescence for oxidative desorption was much slower than the reductive desorption. Comparing monomer and dimer fluorescence intensities indicated that the dimer was formed on the Au surface and desorbed as a dimer, rather than forming from desorbed monomers near the electrode surface. The dimer fluorescence can only be observed through energy transfer from the excited monomer suggesting that the monomers and dimers must be in close proximity in aggregates near the electrode. The fluorescence yield for longer alkyl chain was always lower presumably due to its decreased solubility in the interfacial region resulting in a more efficient fluorescence quenching. The oxidative desorption process results in a significantly etched or roughened electrode surface suggesting the coupling of thiol oxidative removal and Au oxide formation which results in the removal of Au from the electrode.     

Mass Spectra and Ion Collision Cross Sections of Hemoglobin

Mass spectra of commercially obtained hemoglobin (Hb) show higher levels of monomer and dimer ions, heme-deficient dimer ions, and apo-monomer ions than hemoglobin freshly prepared from blood. This has previously been attributed to oxidation of commercial Hb. Further, it has been reported that that dimer ions from commercial bovine Hb have lower collision cross sections than low charge state monomer ions. To investigate these effects further, we have recorded mass spectra of fresh human Hb, commercial human and bovine Hb, fresh human Hb oxidized with H₂O₂, lyophilized fresh human Hb, fresh human Hb both lyophilized and chemically oxidized, and commercial human Hb oxidized with H₂O₂. Masses of α-monomer ions of all hemoglobins agree with the masses expected from the sequences within 3 Da or better. Mass spectra of the β chains of commercial Hb and oxidized fresh human Hb show a peak or shoulder on the high mass side, consistent with oxidation of the protein. Both commercial proteins and oxidized fresh human Hb produce heme-deficient dimers with masses 32 Da greater than expected and higher levels of monomer and dimer ions than fresh Hb. Lyophilization or oxidation of Hb both produce higher levels of monomer and dimer ions in mass spectra. Fresh human Hb, commercial human Hb, commercial bovine Hb, and oxidized commercial human Hb all give dimer ions with cross sections greater than monomer ions. Thus, neither oxidation of Hb or the difference in sequence between human and bovine Hb make substantial differences to cross sections of ions.     

A Synthetic Chlorophyll Dimer Appending Fullerene: Effect of Chlorophyll Pairing on (Photo)redox Properties

Accurately mimicking structure and function of natural chlorophyll (Chl) assemblies is very challenging. Herein, we report the synthesis of a fullerene-appended Chl dimer being capable of intramolecular photoinduced charge separation (CS) with a unique structure reminiscent of reaction centers (RCs) in phototrophs. Structural analyses revealed that the Chl dimer adopts a bird-like structure in which two Chl components overlapped partially with one of the four pyrrole rings in a Chl ring similar to in a Chl pair in the natural RC complexes. A comparative study including voltammetry and spectrometric analyses using the Chl dimer and its corresponding monomer with and without a fullerene moiety was performed to gain insight into the effect of Chl pairing on (photo)redox properties. Our results suggest that the present dimer motif that closely resemble the Chl pair in natural RCs lead to more facile oxidation and lower energy of the CS state of the Chl dimer than those of the Chl monomer, resulting in its photoredox behavior different from that of the monomer Chl.     

双核Pt(II)配合物的光谱结构和激发态性质的密度泛函理论研究

采用基于第一性原理的密度泛函理论对单核和双核三联吡啶Pt(II)配合物[Pt(trpy)C≡CH]^＋ (1)和[Pt(trpy)C≡ (2)的基态和激发态以及光谱性质进行了系统研究. 结果揭示了双体配合物中Pt—Pt间距离在激发态时明显短于基态时的距离, 而且双体聚合后最低能吸收和发射波长相对单体配合物发生了明显红移, 这种激发的本质被指认为是来自于[d_σ*(d_δ*π*)]的MMLCT (metal-to-metal-to-ligand charge transfer)电荷转移跃迁. 另外, 对研究的配合物, 用VWN (Vosko-Wilk-Nusair)泛函优化得到的几何和用SAOP(轨道势的统计平均)计算的光谱能量和实验值符合得很好, 能够准确反映实验现象.     

Optical coherence and theoretical study of the excitation dynamics of a highly symmetric cyclophane-linked oligophenylenevinylene dimer

Optoelectronic properties of a polyphenylenevinylene-based oligomer and its paracylophane-linked dimer are studied using a variety of experimental and theoretical techniques. Despite the symmetrical structure and redshifted absorption of the dimer versus the monomer, an exciton picture is not the most appropriate. Electronic structure calculations establish changes in charge density upon optical excitation and show localized excitations that cannot be accounted for by a simple Frenkel exciton model. Visible frequency pump-probe anisotropy measurements suggest that the dimer should be considered as a three-level system with a fast, approximately 130 fs, internal conversion from the higher to lower energy excited electronic state. Signatures of nuclear relaxation processes are compared for electric field-resolved transient grating and two-dimensional photon echo spectra. These measurements reveal that nuclear relaxation occurs on similar time scales for the monomer and dimer. The connection between the spectral phase of four-wave mixing signals and the time dependent width of a nuclear wave packet is discussed. Semiempirical electronic structure and metropolis Monte Carlo calculations show that the dominant line broadening mechanisms for the monomer and dimer are associated with inter-ring torsional coordinates. Together, the theoretical calculations and electric field-resolved four-wave mixing experiments suggest that while the structure of dimer is more rigid than that of monomer, the difference in their rigidities is not sufficient to slow down excited state relaxation of dimer with respect to the monomer.     

Specific indolo[3,2,1-jk]carbazole conducting thin-film materials production by selective substitution

Selectively substituted indolo[3,2,1-jk] carbazole (IC) molecules have been synthesized through flash vacuum pyrolysis (FVP) and then electro-oxidized, resulting in the formation of redox-active and electronically conducting thin films consisting exclusively of three highly luminescent dimer species, the 2,2'-, 2,10'-, and 10,10'-coupled dimers. DFT calculation has enabled both the accurate calculation of monomer oxidation potentials and the prediction of the nature of the resulting dimers through consideration of the coupling of the oxidized monomer radical cations. This demonstrates that substituted ICs represent a class of molecules able to form redox-active and conducting dimer films of controlled composition upon oxidation and that DFT calculations can be used to inform the synthesis of specific IC monomers most likely to both produce electronically conducting thin-film materials and yield specific luminescent dimers with desirable materials properties.     

Gaussian charge polarizable interaction potential for carbon dioxide

A number of simple pair interaction potentials of the carbon dioxide molecule are investigated and found to underestimate the magnitude of the second virial coefficient in the temperature interval 220-448 K by up to 20%. Also the third virial coefficient is underestimated by these models. A rigid, polarizable, three-site interaction potential reproduces the experimental second and third virial coefficients to within a few percent. It is based on the modified Buckingham exp-6 potential, an anisotropic Axilrod-Teller correction, and Gaussian charge densities on the atomic sites with an inducible dipole at the center of mass. The electric quadrupole moment, polarizability, and bond distances are set to equal experiment. Density of the fluid at 200 and 800 bars pressure is reproduced to within some percent of observation over the temperature range 250-310 K. The dimer structure is in passable agreement with electronically resolved quantum-mechanical calculations in the literature, as are those of the monohydrated monomer and dimer complexes using the Gaussian charge polarizable model water potential. Qualitative agreement with experiment is also obtained, when quantum corrections are included, for the relative stability of the trimer conformations, which is not the case for the pair potentials.     

Theoretical analysis of the effects of reversible dimerization in size exclusion chromatography

Reversible dimer formation in size exclusion chromatography (SEC) can cause peak splitting, merging, tailing, and fronting. Such behavior can be predicted by the association rate and the dissociation rate relative to the convection rate. Slow association and dissociation result in separated monomer and dimer peaks. Fast association and slow dissociation result in one single dimer peak. Slow association and fast dissociation result in one single monomer peak. Intermediate association and dissociation result in a merged, broad peak with either fronting when monomers dominate or tailing when dimers dominate. A diagram based on the two relative rates is generated to predict general peak shape and retention behavior in SEC.     

Effect of pH on one-electron oxidation chemistry of organoselenium compounds in aqueous solutions

Pulse radiolysis coupled with absorption detection has been employed to study one-electron oxidation of selenomethionine (SeM), selenocystine (SeCys), methyl selenocysteine (MeSeCys), and selenourea (SeU) in aqueous solutions. Hydroxyl radicals (*OH) in the pH range from 1 to 7 and specific one-electron oxidants Cl2*- (pH 1) and Br2*- (pH 7) have been used to carry out the oxidation reactions. The bimolecular rate constants for these reactions were reported to be in the range of 2 x 10(9) to 10 x 10(9) M(-1) s(-1). Reactions of oxidizing radicals with all these compounds produced selenium-centered radical cations. The structure and stability of the radical cation were found to depend mainly on the substituent and pH. SeM, at pH 7, produced a monomer radical cation (lambdamax approximately 380 nm), while at pH 1, a dimer radical cation was formed by the interaction between oxidized and parent SeM (lambdamax approximately 480 nm). Similarly, SeCys, at pH 7, on one-electron oxidation, produced a monomer radical cation (lambdamax approximately 460 nm), while at pH 1, the reaction produced a transient species with (lambdamax approximately 560 nm), which is also a monomer radical cation. MeSeCys on one-electron oxidation in the pH range from 1 to 7 produced monomer radical cations (lambdamax approximately 350 nm), while at pH < 0, the reaction produced dimer radical cations (lambdamax approximately 460 nm). SeU at all the pH ranges produced dimer radical cations (lambdamax approximately 410 nm). The association constants of the dimer radical cations of SeM, MeSeCys, and SeU were determined by following absorption changes at lambdamax as a function of concentration. From these studies it is concluded that formation of monomer and dimer radical cations mainly depends on the substitution, pH, and the heteroatoms like N and O. The availability of a lone pair on an N or O atom at the beta or gamma position results in monomer radical cations having intramolecular stabilization. When such a lone pair is not available, the monomer radical cation is converted into a dimer radical cation which acquires intermolecular stabilization by the other selenium atom. The pH dependency confirms the role of protonation on stabilization. The oxidation chemistry of these selenium compounds is compared with that of their sulfur analogues.     

Formation of trimer and dimer radical cations of methyl-substituted benzenes in gamma-irradiated low-temperature matrices

Dimer and trimer radical cations of benzene, toluene, and xylenes were produced selectively after gamma-irradiation in low-temperature 2-methylpentane matrices with electron scavengers: oxygen (O(2)) and sec-butyl chloride (sec-BuCl). The charge resonance (CR) band of the trimer radical cation (M(3)(+)) produced via the corresponding dimer radical cation (M(2)(+)) is clearly seen in the solution containing O(2) as the temperature increases over a range from 80 to 90 K. In o-xylene solution, a fairly strong and distinct M(3)(+) CR absorption is observed; this is due to the large M(3)(+)/M(2)(+) relative extinction coefficient. All benzene derivatives show an equilibrium between dimer and trimer radical cations at approximately 90 K; however, the equilibrium constants of toluene and the xylenes are considerably lower than that of benzene. Formation of the trimer radical cation is inhibited in sec-BuCl, which has commonly been used as a low-temperature optical matrix for producing cationic species. An ab initio DFT method is applied to predict the geometry of M(3)(+), giving "slipped sandwich" (for benzene, m-xylene, and p-xylene) and "slipped fan-shaped" (toluene and o-xylene) structures as the most plausible geometries. The experimentally observed spectroscopic parameters reflect well those predicted by TD-DFT calculation based on geometry, suggesting strong dependence of the geometry of M(3)(+) on substitution patterns. This is the first report not only of direct spectroscopic observation of aromatic trimer radical cations in the condensed phase but also on the quantitative analysis of their equilibria.