Improved Pöschl–Teller potential energy model for diatomic molecules

By employing the dissociation energy and the equilibrium internuclear distance for a diatomic molecule as explicit parameters, we construct an improved Pöschl–Teller potential energy model. We analyze the average absolute deviations of the improved Pöschl–Teller and Morse potentials from the experimental Rydberg–Klein–Rees (RKR) potentials for six diatomic molecules. It is found that the improved Pöschl–Teller potential is more accurate than the Morse potential in fitting experimental RKR potential curves over a large range of internuclear distances for six molecules examined.     

Dealing with the shifted and inverted Tietz–Hua oscillator potential using the J‐matrix method

The tridiagonal J‐matrix approach has been used to calculate the low and moderately high‐lying eigenvalues of the rotating shifted Tietz–Hua (RSTH) oscillator potential. The radial Schrödinger equation is solved efficiently by means of the diagonalization of the full Hamiltonian matrix, with the Laguerre or oscillator basis. Ro–vibrational bound state energies for 11 diatomic systems, namely , , , NO, CO, , , , , , and NO⁺, are calculated with high accuracy. Some of the energy states for molecules are reported here for the first time. The results of the last four molecules have been introduced for the first time using the oscillator basis. Higher accuracy is achieved by calculating the energy corresponding to the poles of the S‐matrix in the complex energy plane using the J‐matrix method. Furthermore, the bound states and the resonance energies for the newly proposed inverted Tietz–Hua IRSTH‐potential are calculated for the H₂‐molecule with scaled depth. A detailed analysis of variation of eigenvalues with n, quantum numbers is made. Results are compared with literature data, wherever possible. © 2015 Wiley Periodicals, Inc.     

Measurement of long‐range proton–carbon coupling constants from pure in‐phase 1D multiplets

The SELective INverse detection of carbon–proton CORrelation pulse sequence that yields a 1D spectrum of a proton directly bonded to a selected carbon resonance has been converted into a proton and carbon double‐selective variant that provides a ¹H spectrum of a selected proton that is long‐range coupled to a specific carbon resonance. The resulting 1D proton multiplet exhibits a pure absorptive in‐phase lineshape for precise measurement of specific long‐range proton–carbon coupling constants in small organic molecules at natural abundance. Copyright © 2011 John Wiley & Sons, Ltd.     

Simple correction improving long‐term reproducibility of HPLC–MS

Chromatographic peak areas in long series of high‐performance liquid chromatography–MS experiments often vary, which decrease reproducibility and may cause bias in the results. It was found that the sensitivity of various components change differently; in our case, variability is in the order of 20–40%, and it is most likely due to changing conditions in electrospray ionization (ESI). The most often used peak area correction methods do not take this effect into account. The change in peak areas can be well described by a polynomial function; we found that a fourth‐order polynomial is most often suitable. We suggest a simple correction algorithm based on polynomial fitting. When the experiments were inherently well reproducible, this correction improved reproducibility from 12% to 3% (on average for various components). When random errors were larger, this improvement was less significant (15% to 12% in nano‐ESI) but nevertheless essential in order to avoid possible bias in the results. Copyright © 2015 John Wiley & Sons, Ltd.     

Non‐born–oppenheimer nuclear and electronic densities for a hooke‐coulomb model for a four‐particle system

Based on the exact solutions for a non‐Born–Oppenheimer (nBO) Hooke‐Coulomb model for a four‐particle system (J. Chem. Phys. 2005, 123, 024102), we present here nBO nuclear and electron one‐particle densities for this system. We examine the effect on the topology of the one‐particle densities that arises from the selection of different reference points for the densities. In addition, we analyze the behavior of these densities as a function of the mass ratio between light and heavy particles. We conclude from these results that molecular structure is not univocally related to the topology of the one‐particle densities in a nBO regime. © 2012 Wiley Periodicals, Inc.     

An improved generator coordinate Hartree–Fock method applied to the choice of contracted Gaussian basis sets for first‐row diatomic molecules

Accurate Gaussian basis sets (18s for Li and Be and 20s11p for the atoms from B to Ne) for the first‐row atoms, generated with an improved generator coordinate Hartree–Fock method, were contracted and enriched with polarization functions. These basis sets were tested for B₂, C₂, BeO, CN⁻, LiF, N₂, CO, BF, NO⁺, O₂, and F₂. At the Hartree–Fock (HP), second‐order Møller–Plesset (MP2), fourth‐order Møller–Plesset (MP4), and density functional theory (DFT) levels, the dipole moments, bond lengths, and harmonic vibrational frequencies were studied, and at the MP2, MP4, and DFT levels, the dissociation energies were evaluated and compared with the corresponding experimental values and with values obtained using other contracted Gaussian basis sets and numerical HF calculations. For all diatomic molecules studied, the differences between our total energies, obtained with the largest contracted basis set [6s5p3d1f], and those calculated with the numerical HF methods were always less than 3.2 mhartree. © 2000 John Wiley & Sons, Inc. Int J Quant Chem 78: 15–23, 2000     

The Role of Multiwall Carbon Nanotubes in Cu‐BTC Metal‐Organic Frameworks for CO2 Adsorption

The discovery of natural gas fields with a high content of CO₂ in world gas reservoirs poses new challenges for CO₂ capture. This work investigates the use of the metal‐organic framework (MOF) Cu‐BTC and hybrid MWCNTs@Cu‐BTC for CO₂ adsorption. Cu‐BTC and hybrid MWCNTs@Cu‐BTC were synthesized by the solvothermal method. The results of imaging of intact MOF pores in Cu‐BTC and hybrid MWCNTs@Cu‐BTC nanocrystals by high‐resolution transmission electron microscopy (HRTEM) under liquid nitrogen conditions are presented. Physical characterizations of the solid adsorbents were made by using a selection of different techniques, including field‐emission scanning electron microscopy (FESEM), X‐ray powder diffraction (XRD), Fourier transform infrared (FT‐IR) spectroscopy, thermogravimetric analysis (TGA), Brunauer–Emmet–Teller (BET) surface area, and CO₂ adsorption and physisorption measurements. HRTEM and FESEM confirmed that Cu‐BTC has an octahedral shape and that the surface morphology of Cu‐BTC changes by the intercalation of MWCTNs. The results show that the modified Cu‐BTC improved the CO₂ adsorption compared to pure Cu‐BTC. The increase in the CO₂ uptake capabilities of hybrid MWCNTs@Cu‐BTC was ascribed to the intercalation of MWCNTs with Cu‐BTC crystals. The CO₂ sorption capacities of Cu‐BTC and hybrid MWCNTs@Cu‐BTC were found to increase from 1.91701 to 3.25642 mmol/g at ambient conditions.     

A highly efficient heterogeneous montmorillonite K‐10‐supported palladium catalyst for Suzuki–Miyaura cross‐coupling reaction in aqueous medium

A heterogeneous montmorillonite K‐10‐supported palladium triphenylphosphine catalyst is reported for the Suzuki–Miyaura cross‐coupling reaction at room temperature. A library of electronically diverse aryl bromides and arylboronic acids underwent the cross‐coupling reaction at very good rates in aqueous solvent. The reusability of the catalyst was also examined and it was found to be effective up to three catalytic cycles. Copyright © 2014 John Wiley & Sons, Ltd.     

Formulation of Strutinsky's method for atomic systems in the extended Kohn–Sham scheme

Strutinsky's standard averaging method is formulated in the framework of the extended Kohn–Sham scheme and a two‐step procedure permitting the application of the method is proposed. A Taylor‐series expansion of the ground‐state energy‐function of the occupation numbers is derived, which involves the averaged energy as the leading term and shell corrections as smaller terms. Numerical applications for atoms and ions from Be through Ar are presented and discussed. © 2002 Wiley Periodicals, Inc. Int J Quantum Chem, 2002     

The Baylis–Hillman Adducts as Valuable Source for One‐Pot Multi‐Step Synthesis: A Facile Synthesis of Substituted Piperidin‐2‐ones

A facile, convenient, and one‐pot multi‐step synthesis of substituted piperidin‐2‐ones from the Baylis–Hillman alcohols derived from various aldehydes and acrylonitrile, involving Johnson–Claisen rearrangement, reduction of an α,β‐unsaturated nitrile moiety into the saturated amine‐skeleton, followed by cyclization, in an operationally simple procedure, is described.     

A–π–D–π–A Electron‐Donating Small Molecules for Solution‐Processed Organic Solar Cells: A Review

Organic solar cells based on semiconducting polymers and small molecules have attracted considerable attention in the last two decades. Moreover, the power conversion efficiencies for solution‐processed solar cells containing A–π–D–π–A‐type small molecules and fullerenes have reached 11%. However, the method for designing high‐performance, photovoltaic small molecules still remains unclear. In this review, recent studies on A–π–D–π–A electron‐donating small molecules for organic solar cells are introduced. Moreover, the relationships between molecular properties and device performances are summarized, from which inspiration for the future design of high performance organic solar cells may be obtained.     

Novel Organocatalytic Activation of Unmodified Morita–Baylis–Hillman Alcohols for the Synthesis of Bicyclic α‐Alkylidene‐Ketones

The organocatalytic activation of Morita–Baylis–Hillman alcohols via H‐bonding‐iminium‐ion formation is demonstrated for the first time. This activation strategy enables the Morita‐Baylis–Hillman alcohols to undergo a formal S_N2′ reaction. In combination with the well‐established enamine reactivity, this creates a new reactivity pattern. The application of this new activation mode for the synthesis of bicyclic α‐alkylidene‐ketones is demonstrated. The developed reaction sequence proceeds efficiently affording nature‐inspired target products with four contiguous stereogenic centers in a highly stereoselective manner.     

Efficiency of the dry–wet method for the MALDI‐MSI analysis of latent fingermarks

Matrix‐assisted laser desorption/ionisation mass spectrometry imaging (MALDI‐MSI) has proven to be a powerful analytical tool to investigate problems in several fields of life science. A novel application is in the field of forensics, particularly in the analysis of latent fingermarks. This technology enables images of the fingermark ridge detail and additional intelligence to be simultaneously obtained. Although several methods are available to deposit the MALDI matrix, to make the technology forensically operational, another deposition approach was devised and reported, namely the ‘dry–wet’ method. In the present study, the efficiency of the dry–wet method was evaluated and compared with the conventional spray coat methodology. Results indicate that the dry–wet method is superior for all the donors' typologies in terms of ion signal intensity and clarity of the ridge details. To underpin the reasons of this efficiency, scanning electron microscopy analyses were carried out in parallel to MALDI‐MSI experiments using matrices of different particle size. Results have confirmed that the particle size plays an important role in the efficiency of the method as higher quality images and higher intensity spectra are produced as the matrix particle size decreases. Copyright © 2013 John Wiley & Sons, Ltd.     

Derivation of shell effects and magic numbers in metal clusters by the application of Strutinsky's method to the Clemenger–Nilsson and q‐deformed 3‐D harmonic oscillator models

Strutinsky's standard averaging method is applied to metal clusters described by two different potentials—Clemenger–Nilsson (CN) and q‐deformed 3‐D (Q3D) harmonic oscillator (HO). In addition, a new approximate fitting formula—of the liquid drop model type—is derived for the smooth part of the energy. The results obtained for the oscillating part of the energy (shell correction term) with the two cluster potentials through the two averaging methods are compared and discussed. It is found that with both CN and Q3D HO potentials the standard and approximate methods give similar results for clusters with a large number of particles, whereas for smaller clusters significant differences appear. © 2002 Wiley Periodicals, Inc. Int J Quantum Chem, 2002     

HPLC‐Q‐TOF‐MS/MS for analysis of major chemical constituents of Yinchen–Zhizi herb pair extract

The Yinchen–Zhizi herb pair (YZHP) consists of Herba Artemisiae Scopariae (Yinchen in Chinese) and Fructus Gardeniae (Zhizi in Chinese), and is mainly used to treat icteric hepatitis, itching skin and eczema. However, the bioactive constituents responsible for the pharmacological effects of YZHP are still unclear to date. In this work, a rapid and sensitive method was established to comprehensively study the constituents in YZHP extract by HPLC‐Q‐TOF MS/MS. The analysis was performed on an HPLC system equipped with an Agilent poroshell 120 EC‐C₁₈ column (100 × 2.1 mm, 2.7 mm) working in a gradient elution program coupled to quadrupole‐time‐of‐flight mass spectrometry operating in the negative ion mode. As a result, a total of 46 compounds including 17 from Herba Artemisiae Scopariae and 36 from Fructus Gardeniae were detected and tentatively identified in YZHP extract by comparing the retention time and mass spectrometry and retrieving the reference literature. More importantly, a series of constituents, such as many iridoid glycosides, were reported for the first time in this formula. The HPLC‐Q‐TOF MS/MS method was developed and utilized successfully to identify the major constituents in YZHP extract and would be helpful for further metabolism and pharmacology research on YZHP. Copyright © 2013 John Wiley & Sons, Ltd.     

1JCC‐edited HSQC‐1,n‐ADEQUATE: a new paradigm for simultaneous direct and long‐range carbon–carbon correlation

Establishing the carbon skeleton of a molecule greatly facilitates the process of structure elucidation, leaving only heteroatoms to be inserted, heterocyclic rings to be closed, and stereochemical features to be defined. INADEQUATE, and more recently PANACEA, have been the only means of coming close to the goal of totally defining the carbon skeleton of a molecule. Unfortunately, the extremely low sensitivity and prodigious sample requirements of these experiments and the multiple receiver requirement for the latter experiment have severely restricted the usage of these experiments. Proton‐detected ADEQUATE experiments, in contrast, have considerably higher sensitivity and more modest sample requirements. By combining experiments such as 1,1‐ADEQUATE and 1,n‐ADEQUATE with higher sensitivity experiments such as GHSQC through covariance processing, sample requirements can be further reduced with a commensurate improvement in the s/n ratio and F₁ resolution of the covariance processed spectrum. We now wish to report the covariance processing of an inverted ¹J_CC 1,n‐ADEQUATE experiment with a non‐edited GHSQC spectrum to afford a spectrum that can trace the carbon skeleton of a molecule with the exception of correlations between quaternary carbons. Copyright © 2012 John Wiley & Sons, Ltd.     

The adiabatic‐to‐diabatic transformation angle and the berry phase for coupled jahn–teller/renner–teller systems: The F + H2 as a case study

The approach to calculate improved, two‐state, adiabatic‐to‐diabatic transformation angles (also known as mixing angles), presented before (see Das et al., J Chem Phys 2010, 133, 084107), was used here while studying the F + H₂ system. However, this study is characterized by two new features: (a) it is the first of its kind in which is studied the interplay between Renner–Teller (RT) and Jahn–Teller (JT) nonadiabatic coupling terms (NACT); (b) it is the first of its kind in which is reported the effect of an upper singular RT‐NACT on a lower two‐state (JT) mixing angle. The fact that the upper NACT is singular (it is shown to be a quasi‐Dirac δ‐function) enables a semi‐analytical solution for this perturbed mixing angle. The present treatment, performed for the F + H₂ system, revealed the existence of a novel parameter, η, the Jahn–Renner coupling parameter (JRCP), which yields, in an unambiguous way, the right intensity of the RT coupling (as resembled, in this case, by the quasi‐Dirac δ‐function) responsible for the fact that the final end‐of‐the contour angle (identified with the Berry phase) is properly quantized. This study implies that the numerical value of this parameter is a pure number (independent of the molecular system): η = $ 2\sqrt 2 /\pi $ (= 0.9003) and that there is a good possibility that this value is a novel characteristic molecular constant for a certain class of tri‐atomic systems. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

An anisotropic coarse‐grained model based on Gay–Berne and electric multipole potentials and its application to simulate a DMPC bilayer in an implicit solvent model

In this work, we aim at optimizing the performance of the anisotropic GBEMP model, which adopts a framework by combining a Gay–Berne (GB) anisotropic potential with an electric multipole (EMP) potential, in simulating a DMPC lipid bilayer in an implicit solvent model. First, the Gay–Berne parameters were initially obtained by fitting to atomistic profiles of van der Waals interactions between homodimers of molecular fragments while EMP parameters was directly derived from the expansion of point multipoles at predefined EMP sites. Second, the GB and EMP parameters for DMPC molecule were carefully optimized to be comparable to AMBER atomistic model in the calculations of the dipole moments of DMPC monomers adopting different conformations as well as the nonbonded interactions between two DMPC molecules adopting different conformations and separated at various distances. Finally, the GB parameters for DMPC were slightly adjusted in simulating a 72 DMPC bilayer system so that our GBEMP model would be able to reproduce a few important structural properties, namely, thickness (), area per lipid ( ) and volume per lipid ( ). Meanwhile, the atomistic and experimental results for electron density profiles and order parameters were reproduced reasonably well by the GBEMP model, demonstrating the promising feature of GBEMP model in modeling lipid systems. Finally, we have shown that current GBEMP model is more efficient by a factor of about 25 than AMBER atomistic point charge model. © 2015 Wiley Periodicals, Inc.