Ab initio prediction of the vibrational spectra of the hydrogen‐bonded complexes between CO and HONO2

The vibrational characteristics (vibrational frequencies and infrared intensities) for free and complexed CO and HONO₂ have been predicted using ab initio calculations at SCF and MP2 levels with different basis sets and B3LYP/6?31G(d,p) calculations. The ab initio calculations show that the complexation between HONO₂ and CO leads to two stable structures: CO … HONO₂ (1A) and OC … HONO₂ (1B). The changes in the vibrational characteristics from free monomers to complexes have been estimated. It was established that the most sensitive to the complexation is the stretching O? H vibration. In agreement with the experiment, its vibrational frequency in the complexes is shifted to lower frequency (Δν = ?123 cm^?1). The magnitude of the wave number shift is indicative of relatively strong hydrogen‐bonded interaction. The ab initio calculations at different levels predict an increase of the infrared intensity of the stretching O? H vibration for structure 1A more than five times and for structure 1B more than nine times. The most consistent agreement between the computed values of the frequency shifts for structure 1B and those experimentally observed suggests that this structure is preferred. © 2003 Wiley Periodicals, Inc. Int J Quantum Chem, 2003     

Rayleigh light scattering from hydrogen‐bonded dimers of small astrophysical molecules

High level ab initio calculations of the Rayleigh scattering activities of the hydrogen‐bonded dimers of formic acid (HCOOH), nitrosyl hydride (HNO), and hydrogen cyanide (HCN) molecules have been performed. All these molecules have already been detected in interstellar space and are of great importance from the astrochemical point of view. The geometries of the homo‐ and hetero‐dimers have been optimized using Hartree–Fock and second‐order Møller‐Plesset perturbation theory. Dipole moment, mean dipole polarizability, and polarizability anisotropy have been calculated utilizing Pople‐type 6‐311++G(d,p) and Dunning's aug‐cc‐pVDZ basis sets for all the complexes. The polarizabilities are then used to calculate and analyze the Rayleigh scattering parameters. The results for the dimers, HCN···HCN, HCOOH···HCOOH, HNO···HNO, HCN···HCOOH, HCN···HNO, and HNO···HCOOH are compared with those of the isolated molecules, HCN, HCOOH, and HNO to see the effect of hydrogen bond formation on the molecular interaction with radiation. © 2011 Wiley Periodicals, Inc.     

Spectroscopic and theoretical study of vibrational spectra of hydrogen‐bonded tropolone

Theoretical simulation of the bandshape and fine structure of the ν_s stretching band is presented for tropolone‐H and tropolone‐D taking into account an adiabatic coupling between the high‐frequency O–H(D) stretching and the low‐frequency intra‐ and intermolecular OO stretching modes, and linear and quadratic distortions of the potential energies for the low‐frequency vibrations in the excited state of the O–H(D) stretching vibration. In order to determine the low‐frequency vibrations, the experimental spectra of the polycrystalline tropolone in the far‐infrared and the low‐frequency Raman range have been recorded for the first time. The experimental frequencies in the low‐frequency region are compared with the results of the HF/6‐31G** and Becke3LYP/6‐31G** calculations carried out for the tropolone dimer. ©1999 John Wiley & Sons, Inc. Int J Quant Chem 73: 275–282, 1999     

New basis sets for the evaluation of interaction‐induced electric properties in hydrogen‐bonded complexes

Interaction‐induced static electric properties, that is, dipole moment, polarizability, and first hyperpolarizability, of the CO? (HF)_n and N₂? (HF)_n, n = 1–9 hydrogen‐bonded complexes are evaluated within the finite field approach using the Hartree–Fock, density functional theory, Møller–Plesset second‐order perturbation theory, and coupled cluster methods, and the LPol‐n (n = ds, dl, fs, fl) basis sets. To compare the performance of the different methods with respect to the increase of the complex size, we consider as model systems linear chains of the complexes. We analyze the results in terms of the many‐body and cooperative effects. © 2012 Wiley Periodicals, Inc.     

Time‐dependent density functional theory study on the absorption spectrum of Coumarin 102 and its hydrogen‐bonded complexes

The effect of both solvent polarity and hydrogen bonding (HB) on the electronic transition energy of Coumarin 102 (C102) has been examined using the time‐dependent density functional theory (TDDFT). Solvent effect on both geometry and electronic transition energy is evaluated using the polarizable continuum model (PCM). A linear relation of the absorption maximum of C102 with the solvent polarity function Δf is found using the TDDFT‐PCM method for all solvents except dimethyl sulfoxide. The solvent polarity and the type B HB between the carbonyl oxygen and solvent hydrogen atom make the absorption wavelength redshift, whereas the type A HB between the amino nitrogen atom and solvent hydrogen atom has an opposite effect on the absorption wavelength. The calculated absorption wavelengths of C102 with two type B HB between the carbonyl oxygen and solvent hydrogen atom are in excellent agreement with experimental measurements. The solvatochromism of C102 is analyzed in terms of the Kamlet–Taft equation and the parameters s and a are discussed. © 2010 Wiley Periodicals, Inc. J Comput Chem, 2011.     

Three closely related dibenzazepine carboxylic acids: hydrogen‐bonded aggregation in one,two and three dimensions

In the structure of (6R*,11R*)‐5‐acetyl‐11‐ethyl‐6,11‐dihydro‐5H‐dibenzo[b,e]azepine‐6‐carboxylic acid, C₁₉H₁₉NO₃, (I), the molecules are linked into sheets by a combination of O—H...O and C—H...O hydrogen bonds; in the structure of the monomethyl analogue (6RS,11SR)‐5‐acetyl‐11‐ethyl‐2‐methyl‐6,11‐dihydro‐5H‐dibenzo[b,e]azepine‐6‐carboxylic acid, C₂₀H₂₁NO₃, (II), the molecules are linked into simple C(7) chains by O—H...O hydrogen bonds; and in the structure of the dimethyl analogue (6RS,11SR)‐5‐acetyl‐11‐ethyl‐1,3‐dimethyl‐6,11‐dihydro‐5H‐dibenzo[b,e]azepine‐6‐carboxylic acid, C₂₁H₂₃NO₃, (III), a combination of O—H...O, C—H...O and C—H...π(arene) hydrogen bonds links the molecules into a three‐dimensional framework structure. None of these structures exhibits the R₂²(8) dimer motif characteristic of simple carboxylic acids.     

Topological study of diverse hydrogen‐bonded patterns found in a system of a nickel(II) complex and the sulfate anion

A nickel(II) coordination complex, bis[2,6‐bis(1H‐benzimidazol‐2‐yl‐κN³)pyridine‐κN]nickel(II) sulfate, [Ni(C₁₉H₁₃N₅)₂]SO₄ or [Ni(H₂L)₂]SO₄, having four peripheral tetrahedrally oriented N—H donor units, combines with sulfate bridges to create hydrogen‐bonded structures of varied dimensionality. The three crystal structures reported herein in the space groups P2₁2₁2₁, I and Pccn are defined solely by strong charge‐assisted N—H…O hydrogen bonds and contain disordered guests (water and dimethylformamide) that vary in size, shape and degree of hydrophilicity. Two of the compounds are channelled solids with three‐dimensional structures, while the third is one‐dimensional in nature. In spite of their differences, all three present a striking resemblance to the previously reported anhydrous relative [Guo et al. (2011). Chin. J. Inorg. Chem. 27 , 1517–1520], which is considered as the reference framework from which all three title compounds are derived. The hydrogen‐bonded frameworks are described and compared using crystallographic and topological approaches.     

Thermoreversible gelation with hydrogen‐bonded zipper‐like crosslink junctions

Thermoreversible gelation of polymer chains bearing hydrogen‐bonding functional groups is studied by off‐lattice Monte Carlo simulation with semiflexible bead‐and‐spring model chains. To see the formation of zipper‐like sequential crosslink junctions (domino effect), we introduce stabilization energy ?Δε between the nearest neighboring hydrogen‐bonded beads along a chain in addition to the ordinary pairwise hydrogen‐bond energy ?ε. It is found that the condition nθ/ = 2 is fulfilled at the sol/gel transition point, where is the average zipper length, θ the zipper content per chain, and n the total number of beads on a chain. It is also shown that, at low temperature, zipper growth dominates the nucleation of new zippers, and as a result, there is another transition from a three‐dimensional network to a pairwisely bound state (network/pair transition). © 2005 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 43: 3331–3336, 2005     

Vibrational dynamics of hydrogen‐bonded HCN complexes with OH and NH acids: Computational DFT systematic study

Vibrational properties (band position, infrared [IR], and Raman intensities) of C?N stretching mode were studied in 65 gas phase hydrogen‐bonded 1:1 complexes of HCN with OH acids and NH acids using density functional theory (DFT) calculations at the B3LYP‐6‐311++G(d,p) level. Furthermore, general characteristics of the hydrogen bonds and vibrational changes in acids OH/NH stretching bands were also considered. Experimentally observed blue shift of the C?N stretching band promoted by hydrogen bonding, which shortens the triple bond length, is very well reproduced and quantitatively depends on the hydrogen bond length. Both IR and Raman ν(C?N) band intensities are enhanced, also in good agreement with the experimental results. IR intensity increase is a direct function of the hydrogen bond energy. However, the predicted Raman intensity raise is a more complex function, depending simultaneously on characteristics of both the hydrogen bond (C?N bond length) and the H‐donating acid (polarizability). With these two parameters, ν (C?N) Raman intensities of the complexes are explained with a mean error of ±2.4%. © 2006 Wiley Periodicals, Inc. Int J Quantum Chem, 2007     

A simple model of hydrogen bonding with particular application to trends in hydrogen‐bonded dimers

A simple model has been proposed to explain trends in the computed interaction energy, bond length changes, frequency shifts and infrared intensities for the chlorofluoromethanes CF_nCl_mH, FH and FArH on complexation with the isoelectronic diatomics BF, CO, N₂ and the rare gas atoms Kr, Ar, Ne to form a series of linear or nearly linear hydrogen‐bonded complexes. The dipole moment derivative of the proton donor (with respect to the stretching coordinate) and the chemical hardness of the hydrogen‐bonded atom of the proton acceptor are identified as two useful parameters for rationalizing the changes in some of the molecular properties of the proton donor when the hydrogen bond is formed. © 2009 Wiley Periodicals, Inc. Int J Quantum Chem, 2009     

Investigation of the frequency‐dispersion effects on the Raman spectra of small polyenes

The time‐dependent Hartree–Fock scheme is applied for determining the frequency‐dependent Raman intensities of C_2nH_2n+2 molecules with n = 1–3. This analytic scheme, recently developed and implemented in the GAMESS program (Quinet, O.; Champagne, B. J Chem Phys 2001, 115, 6293), takes advantage of the 2n + 1 rule to express the polarizability derivatives in terms of first‐order derivatives. It is found that including frequency dispersion strongly modifies the intensity activy coefficients of many vibrational normal modes and therefore changes the aspect of the spectra. On the other hand, the depolarization ratio is much less frequency dependent. © 2002 Wiley Periodicals, Inc. Int J Quantum Chem, 2002     

Ab initio study of the structure,cooperativity, and vibrational properties in the mixed hydrogen‐bonded trimers of hydrogen isocyanide and water

The five trimers of H₂O···HNC···H₂O, H₂O···H₂O···HNC, HNC···H₂O···H₂O, H₂O···HNC···HNC, and HNC···HNC···H₂O have been studied with quantum chemical calculations. Their structures, harmonic vibrational frequencies and interaction energies have been calculated at the B3LYP and MP2 levels with the aug‐cc‐pVDZ and aug‐cc‐pVTZ basis sets. The cooperative effect on these properties has also been studied quantitatively. For HNC:(H₂O)₂ systems, the cyclic H₂O···H₂O···HNC trimer is most stable with an interaction energy of ?16.01 kcal/mol and a large cooperative energy of ?3.25 kcal/mol at the MP2/aug‐cc‐pVTZ level. For H₂O:(HNC)₂ systems, the interaction energy and cooperative energy in the H₂O···HNC···HNC trimer are larger than those in the HNC···HNC···H₂O trimer. The NH stretch frequency has a blue shift for the terminal HNC molecule in the HNC···H₂O···H₂O and HNC···HNC···H₂O trimers and a red shift in other cases. A many‐body analysis has also been performed to understand the interaction energies in these hydrogen‐bonded clusters. © 2010 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

Structure,properties, and nature of the BrF‐HX complexes: An Ab initio study

Structure and properties of complexes (energies and charge transfer) of complexes BrF‐HX (X = F, Cl, Br, I) have been investigated at the MP2/aug‐cc‐pVDZ (aug‐cc‐pVDZ‐pp basis sets for I) level. Two types of geometries (hydrogen‐bonded and halogen‐bonded) are observed. The calculated interaction energies show that the halogen bonded structures are more stable than the corresponding hydrogen‐bonded structures. To study the nature of the intermolecular interactions, symmetry‐adapted perturbation theory (SAPT) energy decomposition analysis reveals that the BrF‐HX complexes are dominantly electrostatic in nature. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

Polymer/clay nanocomposites through multiple hydrogen‐bonding interactions

An 2‐ureido‐4[1H]pyrimidinone (UPy) motif with self‐association capability (through quadruple hydrogen bonds) was successfully anchored onto montmorillonite clay layers. Polymer/clay nanocomposites were prepared by specific hydrogen bonding interactions between surface functionalized silica nanoclays and UPy‐bonded supramolecular poly(ethylene glycol) or poly(?‐caprolactone). The mixed morphologies including intercalated layers with a non‐uniform separation and exfoliated single layers isolated from any stack were determined by combined X‐ray diffraction and transmission electron microscopic measurements. Thermal analyses showed that all nanocomposites had higher decomposition temperatures and thermal stabilities compared with neat polymer. The differential scanning calorimetric data implied that the crystallinity of polymers did not show essential changes upon introduction of organomodified UPy clays. © 2014 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2015 , 53, 650–658     

Unexpected beauty and diversity in the structures of three homologous 4,5‐dialkoxy‐1‐ethynyl‐2‐nitrobenzenes: the subtle interplay between intermolecular C—H…O hydrogen bonds and alkyl chain length

The synthesis, ¹H and ¹³C NMR spectra, and X‐ray structures are described for three dialkoxy ethynylnitrobenzenes that differ only in the length of the alkoxy chain, namely 1‐ethynyl‐2‐nitro‐4,5‐dipropoxybenzene, C₁₄H₁₇NO₄, 1,2‐dibutoxy‐4‐ethynyl‐5‐nitrobenzene, C₁₆H₂₁NO₄, and 1‐ethynyl‐2‐nitro‐4,5‐dipentoxybenzene, C₁₈H₂₅NO₄. Despite the subtle changes in molecular structure, the crystal structures of the three compounds display great diversity. Thus, 1‐ethynyl‐2‐nitro‐4,5‐dipropoxybenzene crystallizes in the trigonal crystal system in the space group , with Z = 18, 1,2‐dibutoxy‐4‐ethynyl‐5‐nitrobenzene crystallizes in the monoclinic crystal system in the space group P 2₁/c , with Z = 4, and 1‐ethynyl‐2‐nitro‐4,5‐dipentoxybenzene crystallizes in the triclinic crystal system in the space group , with Z = 2. The crystal structure of 1‐ethynyl‐2‐nitro‐4,5‐dipropoxybenzene is dominated by planar hexamers formed by a bifurcated alkoxy sp‐C—H…O,O′ interaction, while the structure of the dibutoxy analogue is dominated by planar ribbons of molecules linked by a similar bifurcated alkoxy sp‐C—H…O,O′ interaction. In contrast, the dipentoxy analogue forms ribbons of molecules alternately connected by a self‐complementary sp‐C—H…O₂N interaction and a self‐complementary sp²‐C—H…O₂N interaction. Disordered solvent was included in the crystals of 1‐ethynyl‐2‐nitro‐4,5‐dipropoxybenzene and its contribution was removed during refinement.     

The hydrogen‐bonded complex bis(tert‐butylammonium) 2,6‐dichlorophenolate 2,4‐dichlorophenol–2,4‐dichlorophenolate tetrahydrofuran disolvate containing a chiral R53(10) hydrogen‐bonded ring as a supramolecular synthon

A fixed hydrogen‐bonding motif with a high probability of occurring when appropriate functional groups are involved is described as a `supramolecular hydrogen‐bonding synthon'. The identification of these synthons may enable the prediction of accurate crystal structures. The rare chiral hydrogen‐bonding motif R₅³(10) was observed previously in a cocrystal of 2,4,6‐trichlorophenol, 2,4‐dichlorophenol and dicyclohexylamine. In the title solvated salt, 2C₄H₁₂N⁺·C₆H₃Cl₂O⁻·(C₆H₃Cl₂O⁻·C₆H₄Cl₂O)·2C₄H₈O, five components, namely two tert‐butylammonium cations, one 2,4‐dichlorophenol molecule, one 2,4‐dichlorophenolate anion and one 2,6‐dichlorophenolate anion, are bound by N—H…O and O—H…O hydrogen bonds to form a hydrogen‐bonded ring, with the graph‐set motif R₅³(10), which is further associated with two pendant tetrahydrofuran molecules by N—H…O hydrogen bonds. The hydrogen‐bonded ring has internal symmetry, with a twofold axis running through the centre of the 2,6‐dichlorophenolate anion, and is isostructural with a previous and related structure formed from 2,4‐dichlorophenol, dicyclohexylamine and 2,4,6‐trichlorophenol. In the title crystal, helical columns are built by the alignment and twisting of the chiral hydrogen‐bonded rings, along and across the c axis, and successive pairs of rings are associated with each other through C—H…π interactions. Neighbouring helical columns are inversely related and, therefore, no chirality is sustained, in contrast to the previous case.     

Synthesis and characterization of hydrogen‐bonded thermotropic liquid crystalline aromatic‐aliphatic poly(ester–amide)s from amido diol

Fifteen highly regular hydrogen‐bonded, novel thermotropic, aromatic‐aliphatic poly(ester–amide)s (PEAs) were synthesized from aliphatic amido diols by melt polycondensation with dimethyl terephthalate and solution polycondensation with terephthaloyl chloride. Intermolecular hydrogen bonds more or less perpendicular to the main‐chain direction induce the formation and stabilization of liquid crystalline property for these PEAs. The structure of these polymers, even in the mesomorphic phase is dominated by hydrogen bonds between the amide–amide and amide–ester groups in adjacent chains. Aliphatic amido diols were synthesized by the aminolysis of γ‐butyrolactone, δ‐valerolactone and ε‐caprolactone with aliphatic diamines containing a number of methylene groups from two to six in isopropanol medium at room temperature. Effects of polarity of the solvent on solution polymerization and effect of catalyst on trans esterification were studied. These polymers were characterized by elemental analysis, FTIR, ¹H NMR, ¹³C NMR, solubility studies, inherent viscosity, DSC, X‐ray diffraction, polarized light microscopy, and TGA. All the melt/solution polycondensed PEAs showed multiple‐phase transitions on heating with second transitions identified as nematic/smectic/spherullitic texture. The mesomorphic properties were studied as a function of their chemical structure by changing alternatively m or n. Odd‐even effect on mesophase transition temperature, isotropization temperature, and crystallinity were studied. The effect of molecular weight and polydispersity on mesophase/isotropization temperature and thermal stability were investigated. It was observed that there exists a competition for crystallinity and liquid crystallinity in these PEAs © 2000 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 38: 2469–2486, 2000     

Theoretical study of hydrogen‐bonded complexes of benzene with hydrides of astrochemical interest

Post Hartree–Fock and DFT calculations have been performed for studying the possibility for a benzene support to be linked to various hydrides through a quasi Bz···H? A bond. Interaction energy of compounds, including C? H bonds (CH₄, CH₃F, CH₂O, CHN, CHN? O), N? H bonds (NH₃, NH₂F, NHC, NHCO, NH₃O), and O? H bonds (OH₂, OHF, NCOH), were evaluated, taking basis set superposition error (BSSE) and zero point vibrational energy (ZPVE) corrections into account. Numerical convergence of results with respect to the ingredients included at different steps of theory (basis set, DFT functionals, correlation treatments, geometry optimization) was tested mainly on the example of the water adduct and, for comparison, the Bz···H₃O⁺ system containing a cation instead of a neutral molecule. A rather large range of adsorption energies is obtained, from about 1 kcal/mol for methane to more than 6 kcal/mol for cyanic acid, according to the acidic character of the adsorbed species in each family of Bz···H? A bonds. Some consequences for astrophysical problems involving PAHs in the interstellar medium are pointed out. © 2007 Wiley Periodicals, Inc. Int J Quantum Chem, 2008