On the importance of intramolecular hydrogen bond cooperativity in d‐glucose – an NMR and QTAIM approach

The idea that hydrogen bond cooperativity is responsible for the structure and reactivity of carbohydrates is examined. Density functional theory and gauge‐including atomic orbital calculations on the known conformers of the α and β anomers of d ‐glucopyranose in the gas phase are used to compute proton NMR chemical shifts and interatomic distances, which are taken as criteria for probing intramolecular interactions. Atom–atom interaction energies are calculated by the interacting quantum atoms approach in the framework of the quantum theory of atoms in molecules. Association of OH1 in the counterclockwise conformers with a strong acceptor, pyridine, is accompanied by cooperative participation from OH2, but there is no significant change in the bonding of the two following 1,2‐diol motifs. The OH6 ^... O5 (G?g+/cc/t and G+g?/cc/t conformers) or OH6 ^... O4 (Tg+/cc/t conformer) distance is reduced, and the OH6 proton is slightly deshielded. In the latter case, this shortening and the associated increase in the OH6–O4 interaction energy may be interpreted as a small cooperative effect, but intermolecular interaction energies are practically the same for all three conformers. In most of the pyridine complexes, one ortho proton interacts with the endocyclic oxygen O5. Analogous results are obtained when the clockwise conformer, G?g+/cl/g?, detected for the α anomer, and a hypothetical conformer, Tt/cl/g?, are complexed with pyridine through OH6. Generally, the cooperative effect does not go beyond the first two OH groups of a chain. Copyright © 2017 John Wiley & Sons, Ltd.     

O—H⋯O‐bridged dimers linked via C—H⋯O and C—H⋯π inter­actions in 4,6‐di‐O‐benzyl‐myo‐inositol 1,3,5‐orthoformate

The centrosymmetric O—H⋯O‐bonded head‐to‐head dimers of the title compound, C₂₁H₂₂O₆, are linked together via bifurcated C—H⋯O inter­actions along the a axis and via favourable C—H⋯π inter­actions along the b axis in the crystal structure.     

Strong intramolecular O—H⋯O hydrogen bonds in quinaldic acid N‐oxide and picolinic acid N‐oxide

The title compounds contain very short intramolecular hydrogen bonds of the type C—O—H?O—N. The O?O distances are 2.425 (2) Å in picolinic acid N‐oxide (2‐carboxy­pyridine N‐oxide), C₆H₅NO₃, (I), and 2.435 (2) Å in quinaldic acid N‐oxide (2‐carboxy­quinoline N‐oxide), C₁₀H₇NO₃, (II). In (II), this is associated with slight molecular distortion from planarity, while in (I), such an effect cannot be observed because the mol­ecule crystallizes on a mirror plane.     

Proton‐bifurcated C—H⋯(O,O) hydrogen bonds in 2,3‐dichloro‐6‐nitro­benzyl­aminium chloride

In the crystal structure of the title salt, C₇H₇Cl₂N₂O₂⁺·Cl⁻, the chloride anions participate in extensive hydrogen bonding with the aminium cations and indirectly link the mol­ecules through multiple N⁺—H⋯Cl⁻ salt bridges. There are two independent mol­ecules in the asymmetric unit, related by a pseudo‐inversion center. The direct inter­molecular coupling is established by C—H⋯O, C—H⋯Cl and C—Cl⋯Cl⁻ inter­actions. A rare three‐center (donor bifurcated) C—H⋯(O,O) hydrogen bond is observed between the methyl­ene and nitro groups, with a side‐on intra­molecular component of closed‐ring type and a head‐on inter­molecular component.     

Ethyl N‐(2‐benzyl­amino‐6‐benzyl­oxy‐5‐nitro­sopyrimidin‐4‐yl)­glycinate: sheets built from a three‐centre N—H⋯(N,O), and two‐centre C—H⋯O and C—H⋯π(arene) hydrogen bonds

In the title compound, C₂₂H₂₃N₅O₄, the mol­ecules are linked into chains by a three‐centre N—H?(N,O) hydrogen bond, reinforced by a two‐centre C—H?O hydrogen bond, and the chains are further linked into sheets by a combination of C—H?O and C—H?π(arene) hydrogen bonds.     

C—H⋯O,C—H⋯π and π–π inter­actions in three benzofuran‐2‐yl ketone derivatives

The mol­ecules of 2‐benzoyl‐1‐benzofuran, C₁₅H₁₀O₂, (I), inter­act through double C—H⋯O hydrogen bonds, forming dimers that are further linked by C—H⋯O, C—H⋯π and π–π inter­actions, resulting in a three‐dimensional supramolecular network. The dihedral angle between the benzo­yl and benzofuran fragments in (I) is 46.15 (3)°. The mol­ecules of bis­(5‐bromo‐1‐benzofuran‐2‐yl) ketone, C₁₇H₈Br₂O₃, (II), exhibit C₂ symmetry, with the carbon­yl group (C=O) lying along the twofold rotation axis, and are linked by a combination of C—H⋯O and C—H⋯π inter­actions and Br⋯Br contacts to form sheets. The stability of the mol­ecular packing in 3‐mesit­yl‐3‐methyl­cyclo­but­yl 3‐methyl­naphtho[1,2‐b]furan‐2‐yl ketone, C₂₈H₂₈O₂, (III), arises from C—H⋯π and π–π stacking inter­actions. The fused naphthofuran moiety in (III) is essentially planar and makes a dihedral angle of 81.61 (3)° with the mean plane of the trimethyl­benzene ring.     

Bis(4‐hydroxy­benzoato‐O)(1,4,8,11‐tetra­aza­cyclo­tetra­decane‐κ4N)nickel(II): a three‐dimensional framework built from O—H⋯O and N—H⋯O hydrogen bonds

The title compound, [Ni(C₇H₅O₃)₂(C₁₀H₂₄N₄)], contains octahedral Ni^II in a centrosymmetric trans configuration with Ni—N distances of 2.0637 (17) and 2.0699 (16) Å and an Ni—O distance of 2.1100 (14) Å. The mol­ecules are linked by a single type of O—H?O hydrogen bond [O?O 2.618 (2) Å and O—H?O 161°] into two‐dimensional sheets; a singletype of N—H?O hydrogen bond [N?O 2.991 (2) Å and N—H?O 139°] links these sheets into a three‐dimensional framework.     

2‐Amino‐4,6‐bis(benzyloxy)‐5‐nitrosopyrimidine: chains built from three‐centre N—H⋯(N,O) and N—H⋯π(arene) hydrogen bonds

The molecules of the title compound, C₁₈H₁₆N₄O₃, exhibit a very polarized molecular–electronic structure. The mol­ecules are linked into chains by a combination of an asymmetric three‐centre N—H?(N,O) hydrogen bond [H?N 2.19, H?O 2.54, N?N 3.041 (4) and N?O 2.977 (4) Å, and N—H?N 168, N—H?O 112 and N?H?O 67°] and an N—H?π(arene) interaction [H?Cg 2.67 Å, N?Cg 3.496 (4) Å and N—H?Cg 163°; Cg is a benzyl ring centroid].     

cis‐Diaqua­[(E)‐2‐(2‐oxidobenzyl­idene­amino‐κ2N,O)­benzoato‐κO]copper(II): tubes built from O—H⋯O hydrogen‐bonding, π–π and C—H⋯π inter­actions

In the title compound, [Cu(C₁₄H₉NO₃)(H₂O)₂], which crystallizes with Z = 18 in the space group R, pairs of complexes are linked into dimers by three O—H⋯O hydrogen bonds. Strong O—H⋯O hydrogen bonds link the dimers into one‐dimensional chains that further assemble into tubes through π–π and C—H⋯π inter­actions.     

Bis(4‐nitro­phenyl) di­sulfide at 150 K,a three‐dimensional framework built from C—H⋯O hydrogen bonds and aromatic π⋯π stacking interactions

In the title compound, (4‐O₂NC₆H₄)₂S₂ or C₁₂H₈N₂O₄S₂, the mol­ecules lie across twofold rotation axes. A single type of C—H?O hydrogen bond, with C?O = 3.394 (3) Å and C—H?O = 158°, links the mol­ecules into continuous two‐dimensional sheets built from a single type of R⁴₄(44) ring. These sheets are linked by aromatic π?π stacking interactions to form a continuous three‐dimensional framework.     

(1SR,2RS,5RS,6SR,8RS)‐7,7‐Dimethyltricyclo[6.2.1.01,6]undecane‐2,5,6‐triol: a supramolecular framework built from O—H⋯O hydrogen bonds

In the title compound, C₁₃H₂₂O₃, the asymmetric unit has two independent mol­ecules linked by a strong O—H?O hydrogen bond. The cyclo­hexane ring is trans fused to the cyclo­pentane ring bridged through an ethyl moiety. The hydroxyl groups act as donors as well as acceptors, resulting in an extensive two‐dimensional hydrogen‐bonded network in the (011) plane. Intermolecular O—H?O bonds between centrosymmetrically related mol­ecules form a four‐membered supramolecular assembly, leading to infinite chains parallel to the [01] direction, crosslinked in the [100] direction.     

4,4′‐Tri­methyl­enedipyridinium bis­[carboxy­methyl­phos­pho­nate(1–)]: a three‐dimensional framework structure built from O—H⃛O,N—H⃛O and C—H⃛O hydrogen bonds

In the title compound, C₁₃H₁₆N₂²⁺·2C₂H₄O₅P⁻, the cation lies across a twofold rotation axis in space group Fdd2. The anions are linked into molecular ladders by two O—H⃛O hydrogen bonds [H⃛O = 1.73 and 1.77 Å, O⃛O = 2.538 (2) and 2.598 (3) Å, and O—H⃛O = 160 and 170°], these ladders are linked into sheets by a single type of N—H⃛O hydrogen bond [H⃛O = 1.75 Å, N⃛O = 2.624 (3) Å and N—H⃛O = 171°] and the sheets are linked into a three‐dimensional framework by a single type of C—H⃛O hydrogen bond [H⃛O = 2.48 Å, C⃛O = 3.419 (4) Å and C—H⃛O = 167°].     

2′,4′‐Di­hydroxy‐3‐methoxy‐α,β‐di­hydro­chalcone and 2′,4‐di­hydroxy‐α,β‐di­hydro­chalcone: supramolecular structures formed by O—H⋯O,C—H⋯O and stacking interactions

The crystal structures of 2′,4′‐di­hydroxy‐3‐methoxy‐α,β‐di­hydro­chalcone, C₁₆H₁₆O₄, and 2′,4‐di­hydroxy‐α,β‐di­hydro­chalcone, C₁₅H₁₄O₃, have been determined. In both compounds, the structure consists of two nearly planar six‐membered aromatic rings connected by a propanal chain, which is bent in the methoxy compound and almost straight in the other compound. In the crystal structures, the molecular units of both compounds are linked by O—H⋯O hydrogen bonds to form infinite one‐dimensional chains. Hydro­gen bonds and C—H⋯O contacts in the crystal structures were studied by topological analysis of charge density based on Hartree–Fock calculations. Almost all of the investigated C—H⋯O contacts should be characterized as weak hydrogen bonds.     

cis‐Diaqua­bis[(E)‐4‐(2‐hydroxy­benzyl­idene­amino)benzoato‐κ2O,O′]cadmium(II): two‐dimensional layers built from strong O—H⋯O hydrogen bonding in the coordination sphere

In the title compound, [Cd(C₁₄H₁₀NO₃)₂(H₂O)₂], which crystallizes with Z = 4 in the space group C2c, the Cd atom is located on a twofold rotation axis and coordinated by six O atoms from two water mol­ecules and two carboxylate groups of two planar 4‐(2‐hydroxy­benzyl­idene­amino)­benzoate lig­ands, with a dihedral angle of 85.6 (1)° between them. Strong O—H⋯O hydrogen bonding in the coordination sphere, together with π–π stacking inter­actions, assemble the mol­ecules into two‐dimensional layers.     

Ferrocene­carboxyl­ic acid–1,4‐di­aza­bi­cyclo­[2.2.2]­octane (2/1): sheets built from O—H⃛N and C—H⃛O hydrogen bonds

In the title compound, 2[Fe(C₅H₅)(C₆H₅O₂)]·C₆H₁₂N₂, the molecular components are linked into finite three‐component aggregates by strong O—H?N hydrogen bonds [O?N 2.578 (4) and 2.604 (5) Å; O—H?N 170 (5) and 174 (6)°]; these aggregates are further linked by C—H?O hydrogen bonds [C?O 3.327 (5)–3.401 (5) Å; C—H?O 149–157°] into continuous sheets in the form of (6,3) nets.