“Dumbbell”‐ and “Clackers”‐Shaped Dimeric Derivatives of Monocarba‐closo‐dodecaborate

We designed, synthesized, and characterized two types of dimeric forms of monocarba‐closo‐dodecaborate, namely, a “dumbbell”‐shaped dianion having a C?C bond and a “clackers”‐shaped monoanion having an iodonium linker. The unique architectures of these anionic molecules were established by X‐ray analysis. Spectroscopic analysis, DFT calculations, and reactivity experiments revealed high anionic and chemical stability of both anions, which are crucial properties for weakly coordinating anions.     

“Head‐to‐Middle” and “Head‐to‐Tail” cis‐Prenyl Transferases: Structure of Isosesquilavandulyl Diphosphate Synthase

We report the first X‐ray crystallographic structure of the “head‐to‐middle” prenyltransferase, isosesquilavandulyl diphosphate synthase, involved in biosynthesis of the merochlorin class of antibiotics. The protein adopts the ζ or cis‐prenyl transferase fold but remarkably, unlike tuberculosinol adenosine synthase and other cis‐prenyl transferases (e.g. cis‐farnesyl, decaprenyl, undecaprenyl diphosphate synthases), the large, hydrophobic side chain does not occupy a central hydrophobic tunnel. Instead, it occupies a surface pocket oriented at 90° to the hydrophobic tunnel. Product chain‐length control is achieved by squeezing out the ligand from the conventional allylic S1 binding site, with proton abstraction being achieved using a diphosphate‐Asn‐Ser relay. The structures revise and unify our thinking as to the mechanism of action of many other prenyl transferases and may also be of use in engineering new merochlorin‐class antibiotics.     

A “One Pot,” Environmentally Friendly,Multicomponent Synthesis of 2‐Amino‐5‐cyano‐4‐[(2‐aryl)‐1H‐indol‐3‐yl]‐6‐hydroxypyrimidines and Their Antimicrobial Activity

A series of multifunctional 2‐amino‐5‐cyano‐4‐[(2‐aryl)‐1H‐indol‐3‐yl]‐6‐hydroxypyrimidines ( 4a , 4b , 4c , 4d , 4e , 4f ) was synthesized by multicomponent reaction of 3‐formylindole ( 1 ), cyanoethylacetate ( 2 ), and guanidine hydrochloride ( 3 ) with NaOH by using green chemical techniques, viz. microwave irradiation and grindstone technology. The same reactants when refluxed in ethanol also gave titled compounds ( 4a , 4b , 4c , 4d , 4e , 4f ). Compared with conventional procedure, the reaction can be carried out under milder conditions, requiring a shorter reaction time and giving higher yields following the green chemistry methodology. All the synthesized compounds have been characterized on the basis of elemental analyses and spectral data (IR, ¹H NMR, ¹³C NMR, and mass). All synthesized compounds were also evaluated for their antimicrobial activity against nine pathogenic bacteria, antifungal activity against Rhizopus stolonifer, Aspergillus flavus, and Fusarium oxysporum and antibacterial activity against Escherichia coli and Pseudomonas aeruginosa at different concentrations. Most of the compounds showed mild to moderate activity.     

“Reduced” Coumarin Dyes with an O‐Phosphorylated 2,2‐Dimethyl‐4‐(hydroxymethyl)‐1,2,3,4‐tetrahydroquinoline Fragment: Synthesis,Spectra, and STED Microscopy

Large Stokes‐shift coumarin dyes with an O‐phosphorylated 4‐(hydroxymethyl)‐2,2‐dimethyl‐1,2,3,4‐tetrahydroquinoline fragment emitting in the blue, green, and red regions of the visible spectrum were synthesized. For this purpose, N‐substituted and O‐protected 1,2‐dihydro‐7‐hydroxy‐2,2,4‐trimethylquinoline was oxidized with SeO₂ to the corresponding α,β‐unsaturated aldehyde and then reduced with NaBH₄ in a “one‐pot” fashion to yield N‐substituted and 7‐O‐protected 4‐(hydroxymethyl)‐7‐hydroxy‐2,2‐dimethyl‐1,2,3,4‐tetrahydroquinoline as a common precursor to all the coumarin dyes reported here. The photophysical properties of the new dyes (“reduced coumarins”) and 1,2‐dihydroquinoline analogues (formal precursors) with a trisubstituted C=C bond were compared. The “reduced coumarins” were found to be more photoresistant and brighter than their 1,2‐dihydroquinoline counterparts. Free carboxylate analogues, as well as their antibody conjugates (obtained from N‐hydroxysuccinimidyl esters) were also prepared. All studied conjugates with secondary antibodies afforded high specificity and were suitable for fluorescence microscopy. The red‐emitting coumarin dye bearing a betaine fragment at the C‐3‐position showed excellent performance in stimulation emission depletion (STED) microscopy.     

“Kick‐Starting” oxetane photopolymerizations

In the presence of small amounts of 2,2‐dialkyl‐, 2,2,3‐trialkyl‐, or 2,2,3,3‐tetraalkyl substituted epoxides such as isobutylene oxide, 1,2‐limonene oxide, and 2,2,3,3,‐tetramethyl oxirane, the photoinitiated cationic ring‐opening polymerizations of 3,3‐disubstituted oxetanes are dramatically accelerated. The acceleration affect was attributed to an increase in the rate of the initiation step of these latter monomers. Both mono‐ and disubstituted oxetane monomers are similarly accelerated by the above‐mentioned epoxides to give crosslinked network polymers. The potential for the use of such “kick‐started” systems in applications such as coatings, adhesives, printing inks, dental composites and in three‐dimensional imaging is discussed. © 2014 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2014 , 52, 2934–2946     

Formation of α‐SF5‐Enolate Enables Preparation of 3‐SF5‐Quinolin‐2‐ones, 3‐SF5‐Quinolines,and 3‐SF5‐Pyridin‐2‐ones: Evaluation of their Physicochemical Properties

This study describes, for the first time, the generation of a SF₅‐substituted ester enolate from benzyl SF₅‐acetate under soft enolization conditions, which in turn participates in aldol addition reactions in high yield. The reaction was applied in the synthesis of 3‐SF₅‐quinolin‐2‐ones, 3‐SF₅‐quinolines, and 3‐SF₅‐pyridin‐2‐ones, none of which have previously been reported. To provide guidelines for their use in drug discovery, the physicochemical properties of these building blocks were determined and compared with those of their CF₃‐ and t‐Bu‐analogues.     

Formation of α‐SF5‐Enolate Enables Preparation of 3‐SF5‐Quinolin‐2‐ones, 3‐SF5‐Quinolines,and 3‐SF5‐Pyridin‐2‐ones: Evaluation of their Physicochemical Properties

This study describes, for the first time, the generation of a SF₅‐substituted ester enolate from benzyl SF₅‐acetate under soft enolization conditions, which in turn participates in aldol addition reactions in high yield. The reaction was applied in the synthesis of 3‐SF₅‐quinolin‐2‐ones, 3‐SF₅‐quinolines, and 3‐SF₅‐pyridin‐2‐ones, none of which have previously been reported. To provide guidelines for their use in drug discovery, the physicochemical properties of these building blocks were determined and compared with those of their CF₃‐ and t‐Bu‐analogues.     

Oxygen‐Dependent Photochemistry and Photophysics of “MiniSOG,” a Protein‐Encased Flavin

Selected photochemical and photophysical parameters of flavin mononucleotide (FMN) have been examined under conditions in which FMN is (1) solvated in a buffered aqueous solution, and (2) encased in a protein likewise solvated in a buffered aqueous solution. The latter was achieved using the so‐called “mini Singlet Oxygen Generator” (miniSOG), an FMN‐containing flavoprotein engineered from Arabidopsis thaliana phototropin 2. Although FMN is a reasonably good singlet oxygen photosensitizer in bulk water (?_Δ = 0.65 ± 0.04), enclosing FMN in this protein facilitates photoinitiated electron‐transfer reactions (Type‐I chemistry) at the expense of photosensitized singlet oxygen production (Type‐II chemistry) and results in a comparatively poor yield of singlet oxygen (?_Δ = 0.030 ± 0.002). This observation on the effect of the local environment surrounding FMN is supported by a host of spectroscopic and chemical trapping experiments. The results of this study not only elucidate the behavior of miniSOG but also provide useful information for the further development of well‐characterized chromophores suitable for use as intracellular sensitizers in mechanistic studies of reactive oxygen species.     

On the “Tertiary Structure” of Poly‐Carbenes; Self‐Assembly of sp3‐Carbon‐Based Polymers into Liquid‐Crystalline Aggregates

The self‐assembly of poly(ethylidene acetate) (st‐PEA) into van der Waals‐stabilized liquid‐crystalline (LC) aggregates is reported. The LC behavior of these materials is unexpected, and unusual for flexible sp³‐carbon backbone polymers. Although the dense packing of polar ester functionalities along the carbon backbone of st‐PEA could perhaps be expected to lead directly to rigid‐rod behavior, molecular modeling reveals that individual st‐PEA chains are actually highly flexible and should not reveal rigid‐rod induced LC behavior. Nonetheless, st‐PEA clearly reveals LC behavior, both in solution and in the melt over a broad elevated temperature range. A combined set of experimental measurements, supported by MM/MD studies, suggests that the observed LC behavior is due to self‐aggregation of st‐PEA into higher‐order aggregates. According to MM/MD modeling st‐PEA single helices adopt a flexible helical structure with a preferred trans‐gauche syn‐syn‐anti‐anti orientation. Unexpectedly, similar modeling experiments suggest that three of these helices can self‐assemble into triple‐helical aggregates. Higher‐order assemblies were not observed in the MM/MD simulations, suggesting that the triple helix is the most stable aggregate configuration. DLS data confirmed the aggregation of st‐PEA into higher‐order structures, and suggest the formation of rod‐like particles. The dimensions derived from these light‐scattering experiments correspond with st‐PEA triple‐helix formation. Langmuir–Blodgett surface pressure–area isotherms also point to the formation of rod‐like st‐PEA aggregates with similar dimensions as st‐PEA triple helixes. Upon increasing the st‐PEA concentration, the viscosity of the polymer solution increases strongly, and at concentrations above 20 wt % st‐PEA forms an organogel. STM on this gel reveals the formation of helical aggregates on the graphite surface–solution interface with shapes and dimensions matching st‐PEA triple helices, in good agreement with the structures proposed by molecular modeling. X‐ray diffraction, WAXS, SAXS and solid state NMR spectroscopy studies suggest that st‐PEA triple helices are also present in the solid state, up to temperatures well above the melting point of st‐PEA. Formation of higher‐order aggregates explains the observed LC behavior of st‐PEA, emphasizing the importance of the “tertiary structure” of synthetic polymers on their material properties.     

Magnetic Anisotropy in “Scorpionate” First‐Row Transition‐Metal Complexes: A Theoretical Investigation

In this work we have analyzed in detail the magnetic anisotropy in a series of hydrotris(pyrazolyl)borate (Tp^?) metal complexes, namely [VTpCl]⁺, [CrTpCl]⁺, [MnTpCl]⁺, [FeTpCl], [CoTpCl], and [NiTpCl], and their substituted methyl and tert‐butyl analogues with the goal of observing the effect of the ligand field on the magnetic properties. In the [VTpCl]⁺, [CrTpCl]⁺, [CoTpCl], and [NiTpCl] complexes, the magnetic anisotropy arises as a consequence of out‐of‐state spin–orbit coupling, and covalent changes induced by the substitution of hydrogen atoms on the pyrazolyl rings does not lead to drastic changes in the magnetic anisotropy. On the other hand, much larger magnetic anisotropies were predicted in complexes displaying a degenerate ground state, namely [MnTpCl]⁺ and [FeTpCl], due to in‐state spin–orbit coupling. The anisotropy in these systems was shown to be very sensitive to perturbations, for example, chemical substitution and distortions due to the Jahn–Teller effect. We found that by substituting the hydrogen atoms in [MnTpCl]⁺ and [FeTpCl] by methyl and tert‐butyl groups, certain covalent contributions to the magnetic anisotropy energy (MAE) could be controlled, thereby achieving higher values. Moreover, we showed that the selection of ion has important consequences for the symmetry of the ground spin–orbit term, opening the possibility of achieving zero magnetic tunneling even in non‐Kramers ions. We have also shown that substitution may also contribute to a quenching of the Jahn–Teller effect, which could significantly reduce the magnetic anisotropy of the complexes studied.     

A green solvent approach to the chemistry of 1,2‐diaryl‐1,2‐disodioethanes

We investigated the generation and the reactivity of selected 1,2‐diaryl‐1,2‐disodioethanes employing cyclopentyl methyl ether and 2‐methyltetrahydrofuran as green solvent alternatives to tetrahydrofuran. Both solvents proved suitable for the generation of these vic‐diorganometals, as well as for their employment as single‐electron transfer reagents. On the other hand, 2‐methyltetrahydrofuran appears as the solvent of choice in reactions involving the employment of these diorganometals as nucleophiles or bases. Accordingly, our results disclose an environmentally more sustainable approach to the chemistry of these diorganometals and, in a wider sense, to reductive metalation reactions. Copyright © 2012 John Wiley & Sons, Ltd.     

A Theoretical Study of 1‐D and 2‐D Helium Lattices

One‐ and two‐dimensional (1‐D and 2‐D) helium lattices have been studied using ab initio RHF/6–31G** computations. Structural, physical and thermochemical properties have been calculated and analyzed for the 1‐D and 2‐D He_N lattices respectively up to N = 50 and N = 36. Asymptotic properties of the 1‐D He_N lattices are obtained by extrapolating N‐dependence properties to large values of N. Analysis of the results show that the bulk per‐atom interaction (binding) energies increase while the optimized interatomic distances (bond lengths) slightly decrease with the increase in size of the 1‐D He_N lattices and both reach their asymptotic values of 0.352 cm^?1 and 3.18775 Å, respectively. Between the square and hexagonal (packed) structures of the 2‐D He_N lattices, the latter is more favored. Extrapolated values of the calculated properties, including lattice parameter, binding and zero point energies, heat capacity, and entropy have also been calculated for both 1‐D and 2‐D He_N lattices. The surface densities for monolayer films of helium atoms with square and hexagonal configurations have been calculated to be respectively 9.84 × 10¹⁸ and 1.04 × 10¹⁹ helium atoms/cm² which are comparable to the experimental value of 2.4 × 10¹⁹ helium atom/m² well within the typical large and directional error bars of the experiments. Surface effects have been investigated by comparing the packed He_N2‐D lattices with the same value of N but with different geometries (arrangements). This comparison showed that the He_N lattices prefer arrangements with the smallest surface area.     

How important is the dispersion interaction for cyclobis(paraquat‐p‐phenylene)‐based molecular “shuttles”? A theoretical study

Inclusion complexes of cyclobis(paraquat‐p‐phenylene) and various aromatic molecules in their neutral and oxidized form were studied at the LMP2/6‐311+G**//BHandHLYP/6‐31G* level of theory, which represents the highest level theoretical study to date for these complexes. The results show that it is dispersion interaction that contributes most to the binding energy. One electron oxidation of a guest molecule leads to complete dissociation of inclusion complex generating strong repulsion potential between guest and host molecules. Electrostatic interactions also can play an important role, provided the guest molecule has a dipole moment; however, dispersion interactions always dominate in binding energy. © 2004 Wiley Periodicals, Inc. Int J Quantum Chem, 2005     

Nonplanar Butterfly‐Shaped π‐Expanded Pyrrolopyrroles

Large aza‐analogues of curved polycyclic aromatic hydrocarbons with a double‐helicene structure present unique features for molecular photonics. We present the preparation and characterization of three such structures. The synthesis of these heterocyclic nanographenes involves only a few high‐yield steps that use readily available starting materials. X‐ray analysis revealed that each of these new dyes has three conformational isomers: one diastereoisomer in a meso form and two enantiomers in twisted forms [(P,P)] and [(M,M)]. The low energy barriers between the conformers, however, prevent their separation by using chiral HPLC, and the NMR spectra show only one set of signals for each of these curved compounds. Density functional theory (DFT) calculations quantify the small energy difference and the small energy barriers between the chiral and meso forms, which fully supports the experimental results. Their optical absorption lacks any sensitivity to the solvent environment, whereas their fluorescence features exhibit pronounced solvatochromism. This rarely observed solvatofluorochromism of centrosymmetric molecules without either electron‐withdrawing groups or ‐donating substituents was probed by using time‐resolved spectroscopy. These studies suggest that, similar to 9,9′‐bianthryl, the nonpolar locally excited state shows negligible solvatochromism, whereas the charge‐transfer state is sensitive to solvent polarity.     

A Constrained Disorder Refinement: “Reinvestigation of “Single‐Crystal X‐ray Structure of 1,3‐Dimethylcyclobutadiene” by M. Shatruk and I. V. Alabugin”

Shatruk and Alabugin propose an alternative structural model for the observed electron density that we have attributed to the photochemical formation of 1,3‐dimethylcyclobutadiene in a protective solid crystalline matrix. The main criticism from Shatruk and Alabugin concerns the modeling of the disorder in the calixarene cavity and in particular the neglect of a residual electron density close to the O1 atom. We published (Chem. Eur. J. 2011 , 17, 10021) our opinion concerning this “ignored peak” in the Supporting Information of the paper. The current response to the Correspondence demonstrates that Shatruk and Alabugin have over‐modeled our data by assigning a small electron density peak, which is hardly more than the density corresponding to a hydrogen atom, to an under‐occupied oxygen site, using inappropriate refinement contraints.     

Bioinspired Total Synthesis of Complex Nucleoside Antibiotics A201A,A201D and A201E

Herein, bioinspired total syntheses of A201A, A201D, and A201E based on a previously reported biosynthetic pathway are presented. The challenging 1,2-cis-furanoside, a core structure of the A201 family, was obtained by remote 2-quinolinecarbonyl-assisted glycosylation. We accomplished the total synthesis of A201A and A201E based on the critical 1,2-cis-furanoside moiety through late-stage glycosylation without any interference from basic dimethyl adenosine. We also confirmed the absolute configuration of A201E by total synthesis. This modular synthesis strategy enables efficient preparation of A201 family antibiotics, allowing the study of their structure–activity relationships and mode of action. This study satisfies the increasing demand for developing novel antibiotics inspired by the A201 family.     

Bioinspired Total Synthesis of Complex Nucleoside Antibiotics A201A,A201D and A201E

Herein, bioinspired total syntheses of A201A, A201D, and A201E based on a previously reported biosynthetic pathway are presented. The challenging 1,2-cis-furanoside, a core structure of the A201 family, was obtained by remote 2-quinolinecarbonyl-assisted glycosylation. We accomplished the total synthesis of A201A and A201E based on the critical 1,2-cis-furanoside moiety through late-stage glycosylation without any interference from basic dimethyl adenosine. We also confirmed the absolute configuration of A201E by total synthesis. This modular synthesis strategy enables efficient preparation of A201 family antibiotics, allowing the study of their structure–activity relationships and mode of action. This study satisfies the increasing demand for developing novel antibiotics inspired by the A201 family.     

Synthesis of star polymers via nitroxide mediated free‐radical polymerization: A “core‐first” approach using resorcinarene‐based alkoxyamine initiators

The synthesis of new octafunctional alkoxyamine initiators for nitroxide‐mediated radical polymerization (NMRP), by the derivatization of resorcinarene with nitroxide free radicals viz TEMPO and a freshly prepared phosphonylated nitroxide, is described. The efficiency of these initiators toward the controlled radical polymerization of styrene and tert‐butyl acrylate is investigated in detail. Linear analogues of these multifunctional initiators were also prepared to compare and evaluate their initiation efficiency. The favorable conditions for polymerization were optimized by varying the concentration of initiators and free nitroxides, reaction conditions, etc., to obtain well‐defined star polymers. Star polystyrene thus obtained were further used as macro‐initiator for the block copolymerization with tert‐butyl acrylate. © 2007 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 45: 5559–5572, 2007     

Synthesis of meso‐Pyrrole‐Substituted 22‐Oxacorroles by a “3+2” Approach

Unsymmetrical 22‐oxacorrole containing two aryl groups and one pyrrole group at the meso position was synthesized by condensing one equivalent of 16‐oxatripyrrane with one equivalent of meso aryl dipyromethane under mild acid‐catalyzed conditions followed by oxidation with 2,3‐dichloro‐5,6‐dicyano‐1,4‐benzoquinone (DDQ). This [3+2] condensation approach was expected to yield meso‐free 25‐oxasmaragdyrin but unexpectedly afforded unsymmetrical meso‐pyrrole‐substituted 22‐oxacorrole. We demonstrated the versatility of the reaction by synthesizing four new meso‐pyrrole‐substituted 22‐oxacorroles. The reactivity of α‐position of meso‐pyrrole was tested by carrying out various functionalization reactions such as bromination, formylation, and nitration and obtained the functionalized meso‐pyrrole‐substituted 22‐oxacorroles in decent yields. The X‐ray structure obtained for one of the functionalized meso‐pyrrole substituted 22‐oxacorrole revealed that the macrocycle was nearly planar and the meso‐pyrrole was in the perpendicular orientation with respect to the macrocyclic plane. The meso‐pyrrole‐substituted 22‐oxacorroles absorb strongly in 400–700 nm region with one strong Soret band and four weak Q bands. The 22‐oxacorroles are strongly fluorescent and showed emission maxima at ≈650 nm with decent quantum yields and singlet‐state lifetimes. The 22‐oxacorroles are redox‐active and exhibited three irreversible oxidations and one or two reversible reduction(s). A preliminary biological study indicated that meso‐pyrrole corroles are biocompatible.     

Phase‐separated microstructures in “all‐acrylic” thermoplastic elastomers

Atomic Force Microscopy (AFM) is used to study the phase separation process occurring in block copolymers in the solid state. Measuring simultaneously the amplitude and the phase of the oscillating cantilever in tapping‐mode operation provides the surface topography along with the cartography of microdomains with different mechanical properties. This in turn allows to characterize the organization of the various components at the surface in terms of well‐defined morphologies (e.g., spheres, cylinders, or lamellae). Here this approach is applied to a series of symmetric triblock copolymers made of a central elastomeric segment (polyalkylacrylate) surrounded by two thermoplastic sequences (polymethylmethacrylate). The occurrence of microphase separation in these materials and the resulting microscopic morphology are essential factors for determining their potential applications as a new class of thermoplastic elastomers. This paper describes how the surface morphology can be controlled by the molecular structure of the copolymers (volume ratio between the sequences, molecular weight, length of the alkyl side group) and by the experimental conditions used for the preparation of the films. The molecular structure of the chains is fully determined by the synthesis of the copolymers via living anionic polymerization while the parameters that can be modified when preparing the samples are the nature of the solvent and the thermal annealing of the films. Finally, we report on a systematic comparison between images and approach‐retract curve data. We show that this experimental comparison allows the origin of the contrast that produces the image to be straightforwardly evaluated. The method provides an unambiguous quantitative measurement of the contribution of the local mechanical response to the image. We show that most of the contrast in the height and phase images is due to variations in local mechanical properties and not in topography.