Bacterial iron transport: coordination properties of azotobactin, the highly fluorescent siderophore of Azotobacter vinelandii

Azotobacter vinelandii, a nitrogen-fixing soil bacterium, secretes in iron deficiency azotobactin delta, a highly fluorescent pyoverdin-like chromopeptidic hexadentate siderophore. The chromophore, derived from 2,3-diamino-6,7 dihydroxyquinoline, is bound to a peptide chain of 10 amino acids: (L)-Asp-(D)-Ser-(L)-Hse-Gly-(D)-beta-threo-HOAsp-(L)-Ser-(D)-Cit-(L)-Hse-(L)-Hse lactone-(D)-N(delta)-Acetyl, N(delta)-HOOrn. Azotobactin delta has three different iron(III) binding sites which are one hydroxamate group at the C-terminal end of the peptidic chain (N(delta)-Acetyl, N(delta)-HOOrn), one alpha-hydroxycarboxylic function in the middle of the chain (beta-threo-hydroxyaspartic acid), and one catechol group on the chromophore. The coordination properties of its iron(III) and iron(II) complexes were measured by spectrophotometry, potentiometry, and voltammetry after the determination of the acid-base functions of the uncomplexed free siderophore. Strongly negatively charged ferric species were observed at neutral p[H]'s corresponding to a predominant absolute configuration Lambda of the ferric complex in solution as deduced from CD measurements. The presence of an alpha-hydroxycarboxylic chelating group does not decrease the stability of the iron(III) complex when compared to the main trishydroxamate siderophores or to pyoverdins. The value of the redox potential of ferric azotobactin is highly consistent with a reductive step by physiological reductants for the iron release. Formation and dissociation kinetics of the azotobactin delta ferric complex point out that both ends of this long siderophore chain get coordinated to Fe(III) before the middle. The most striking result provided by fluorescence measurements is the lasting quenching of the fluorophore in the course of the protonation of the ferric azotobactin delta complex. Despite the release of the hydroxyacid and of the catechol, the fluorescence remains indeed quenched, when iron(III) is bound only to the hydroxamic acid, suggesting a folded conformation at this stage, around the metal ion, in contrast to the unfolded species observed for other siderophores such as ferrioxamine or pyoverdin PaA.     

Metrology of fluorescent retroreflective materials and its relationship to their daytime visibility

This paper describes aspects of fluorescence that relate to high-visibility retroreflective materials used for visual signaling and markings. Full colorimetric characterization of these materials requires separation of the fluorescent and non-fluorescent components. Quantification of the individual components allows for accurate prediction of performance under the various conditions of illumination and viewing encountered in practical applications. When measuring retroreflective materials, it has been found that measurement geometry has a significant influence on the reflected spectral radiance factors. For fluorescent retroreflective materials, the reflected component is more sensitive than the fluorescent component to geometric restraints. Therefore, geometric specifications and tolerances are critical in the measurement of these materials.

Assessment of the relative visibility and conspicuity of fluorescent materials requires an understanding of the relationship between the spectral illumination and the total luminance factor of the specimen. Precise calculation of the total luminance factor under the varying conditions of illumination encountered in outdoor signing and marking applications is possible using the complete bispectral radiance factor array. The relationship between calculated results and field measurements is described. For routine quality control and material specification a more abridged metrology making use of the fluorescence luminance factor (Y_F) has been found useful. Y_F for CIE illuminant D65 can be used to assess the fluorescent content and durability of fluorescent materials used in signing applications. Y_F has also been found to correlate with the increased visibility performance of fluorescent signs under poor daytime visibility conditions. The introduction of Y_F into materials specifications is beginning to take place.     

Preparation of highly fluorescent magnetic nanoparticles for analytes-enrichment and subsequent biodetection

Bifunctional nanoparticles with highly fluorescence and decent magnetic properties have been widely used in biomedical application. In this study, highly fluorescent magnetic nanoparticles (FMNPs) with uniform size of ca. 40 nm are prepared by encapsulation of both magnetic nanoparticles (MNPs) and shell/core quantum dots (QDs) with well-designed shell structure/compositions into silica matrix via a one-pot reverse microemulsion approach. The spectral analysis shows that the FMNPs hold high fluorescent quantum yield (QY). The QYs and saturation magnetization of the FMNPs can be regulated by varying the ratio of the encapsulated QDs to MNPs. Moreover, the surface of the FMNPs can be modified to offer chemical groups for antibody conjugation for following use in target-enrichment and subsequent fluorescent detection. The in vitro immunofluorescence assay and flow cytometric analysis indicate that the bifunctional FMNPs-antibody bioconjugates are capable of target-enrichment, magnetic separation and can also be used as alternative fluorescent probes on flow cytometry for biodetection.     

Problems in colour measurement of fluorescent paper grades

The paper industry's demand for high white paper products is increasing. This requires usage of well-bleached fibres and high dosage of fluorescent brightening agents (FBAs) often applied both in the wet end and at the size press. Specialty paper makers may also use fluorescent colourants for shaded grades, in combination with non-fluorescent colourants and sometimes FBAs. Thus there is an immediate need for reliable, repeatable and reproducible measurement of colour in fluorescent grades.

The paper industry uses a variety of spectrophotometers and colorimeters as their laboratory quality reference instruments. Unfortunately, even on non-fluorescent grades the agreement between different colour instruments is not at the level provided by measurements of properties such as weight or caliper. Furthermore, laboratory instruments measure a stack of sheets, while on-machine instruments measure a single layer, causing additional sources of instrument disagreement and quality deviations.

Colour target specifications and grade limits are usually supplied as colorimetric quantities. This is barely adequate for non-fluorescent grades and problematic for fluorescent grades. Moreover, the standard vocabulary for colour terms is ambiguous concerning certain phenomena relevant to measuring and controlling the colour of fluorescent samples.

This paper describes the special problems in colour measurement of fluorescent grades. Process and instrument issues are discussed. Ambiguities in standard terminology and practices are identified, and improvements are recommended. Examples are given with measurements made at several paper mills.     

Synthesis and characterization of new fluorescent nanoparticles

A novel kind of fluorescent nanoparticles（FNPs）has been prepared using a precipitation polymerization method.Methacrylic acid,trimethylolpropane trimethacrylate and azobisisobutyronitrile were used as functional-monomer,cross-linker and initiator, respectively.Compared with other fluorescent nanoparticles,the FNPs have the characteristics including low dye leakage and good photostability.The fluorescence microscopy imaging indicates that the FNPs can be used as fluorescent labels in bioanalysis.     

Molecular recognition and fluorescent sensing of urethane in water

Molecular recognition and fluorescent sensing of Group 2A carcinogen-urethane was achieved in aqueous solution with endo-functionalized molecular tubes. The syn-configured molecular tube was found to be a good fluorescent sensor for urethane in water (concentration range:6.2-60 μmol/L) and in beer (concentration range:22.9-60 μmol/L).     

Preparation of composite particles with magnetic silica core and fluorescent polymer shell

Dual functions of magnetic and fluorescent properties were created in composite particles that incorporated magnetite (Fe₃O₄) nanoparticles in particle cores of silica and fluorescent pyrene in particle shells of polystyrene. The Fe₃O₄ nanoparticles were prepared with a conventional homogeneous precipitation method and surface modified with a coupling agent of carboxyethylsilanetriol. The silica particles incorporating Fe₃O₄ nanoparticles were synthesized with a modified Stöber method in which the Fe₃O₄ nanoparticles were added to a system of tetraethylorthosilicate (TEOS)/ammonia/water/ethanol. Then, the magnetite/silica composite particles were coated with the pyrene/polystyrene shell in a soap-free emulsion polymerization, which was conducted in the presence of pyrene in a mixed solvent of water/ethanol. The composite particles prepared in the mixed solvent had both magnetic and fluorescent properties. The fluorescent spectrum of the particles with Fe₃O₄ was very similar to that without Fe₃O₄, indicating that the magnetic component within the core particles scarcely interfered with the fluorescent emission from the polymer shell.     

Synthesis and characteristics of snowman-like fluorescent PMMA microbeads

This paper reports the fabrication of fluorescent snowman-like poly(methyl methacrylate) (PMMA) colloidal microbeads using a two-step method. The fluorescent cross-linked PMMA seeds were first synthesized by dispersion polymerization and then swelled in a monomer solution containing the methyl methacrylate monomer, a secondary cross-linker and initiator, followed by heat-induced polymerization. Scanning electron microscopy, confocal laser scanning microscopy, and Fourier transform infrared spectroscopy confirmed the synthesis of fluorescent snowman-like particles.     

An intramolecular charge transfer fluorescent probe: synthesis and selective fluorescent sensing of Ag+

An intramolecular charge transfer (ICT) fluorescent probe, in which the thiourea derivative moiety is linked to the fluorescent 4-(dimethylamino) benzamide, has been designed and synthesized. The ions-selective signaling behaviors of the probe were investigated. Upon the addition of Ag+, an overall emission enhancement of 14-fold was observed. Compound 1 displayed highly selective chelation enhanced fluorescence (CHEF) effect with Ag+ over alkali, alkali earth metal ions and some transition metal ions in aqueous methanol solutions. The prominent selective and efficient fluorescent enhancing behavior could be utilized as a new chemosensing probe for the analysis of Ag+ ion in aqueous environment.     

A unique approach to development of near-infrared fluorescent sensors for in vivo imaging

Near-infrared (NIR) fluorescent sensors have emerged as promising molecular tools for imaging biomolecules in living systems. However, NIR fluorescent sensors are very challenging to be developed. Herein, we describe the discovery of a new class of NIR fluorescent dyes represented by 1a/1c/1e, which are superior to the traditional 7-hydroxycoumarin and fluorescein with both absorption and emission in the NIR region while retaining an optically tunable hydroxyl group. Quantum chemical calculations with the B3LYP exchange functional employing 6-31G(d) basis sets provide insights into the optical property distinctions between 1a/1c/1e and their alkoxy derivatives. The unique optical properties of the new type of fluorescent dyes can be exploited as a useful strategy for development of NIR fluorescent sensors. Employing this strategy, two different types of NIR fluorescent sensors, NIR-H(2)O(2) and NIR-thiol, for H(2)O(2) and thiols, respectively, were constructed. These novel sensors respond to H(2)O(2) or thiols with a large turn-on NIR fluorescence signal upon excitation in the NIR region. Furthermore, NIR-H(2)O(2) and NIR-thiol are capable of imaging endogenously produced H(2)O(2) and thiols, respectively, not only in living cells but also in living mice, demonstrating the value of the new NIR fluorescent sensor design strategy. The new type of NIR dyes presented herein may open up new opportunities for the development of NIR fluorescent sensors based on the hydroxyl functionalized reactive sites for biological imaging applications in living animals.     

Universal fluorescent labeling of amplification products using locked nucleic acids

Amplification/hybridization‐based genetic analyses using primers containing locked nucleic acids (LNAs) present many benefits. Here, we developed a novel design for universal fluorescent PCR using LNAs. Universal fluorescent PCR generates intermediate nonlabeled fragments and final fluorescent fragments in a two‐step amplification process that uses locus‐specific primers with universal tails and universal fluorescent primers. In this study, a few standard nucleotides were replaced with LNAs only in the fluorescent universal primers. The sequence of the fluorescent universal primer significantly affected the amplification efficiency. For primers with three LNAs, the fluorescent primers with stable M13(‐47) sequences provided the most efficient signal (approximately tenfold higher than the primers with M13(‐21) sequences at lower Tm values). Moreover, AT‐rich LNA substitutions in the fluorescent primers produced much lower amplification efficiencies than GC‐rich substitutions. GC‐rich LNAs produced greater differences in Tm values among primers, and resulted in the preferential production of fluorescently labeled amplicons. The specificity and sensitivity of LNA‐containing fluorescent primers were assessed by genotyping eight STRs in Japanese individuals, and full STR profiles could be generated using as little as 0.25 ng of genomic DNA. The method permitted clear discrimination of alleles and represents sensitive STR genotyping at a reduced cost.     

Single-molecule spectroscopy of fluorescent proteins

The discovery and use of fluorescent proteins has revolutionized cellular biology. Despite the widespread use of visible fluorescent proteins as reporters and sensors in cellular environments the versatile photophysics of fluorescent proteins is still subject to intense research. Understanding the details of the photophysics of these reporters is essential for accurate interpretation of the biological and biochemical processes illuminated by fluorescent proteins. Some aspects of the complex photophysics of fluorescent proteins can only be observed and understood at the single-molecule level, which removes averaging inherent to ensemble studies. In this paper we review how single-molecule emission detection has helped understanding of the complex photophysics of fluorescent proteins.

Surface pressure-area isotherms and fluorescent behavior of phospholipids containing labeled pyrene

In this work, the surface and fluorescent behavior of three phospholipids containing a pyrene molecule in one of their hydrocarbon chains was studied. Differences between the isotherms provided by the different monolayers can be attributed to the orientation of the head group in the phospholipids at the air/water interface. This assertion is supported by the fluorescent behavior of monolayers of phospholipids containing labeled pyrene (Py-DPPE, Py-DPPC, and Py-DPPG).     

The two-photon excitation cross section of 6MAP, a fluorescent adenine analogue

6MAP is a fluorescent analogue of adenine that undergoes Watson-Crick base pairing and base stacking in double-stranded DNA. The one-photon absorption spectrum of 6MAP is characterized by a maximum around 330 nm with moderate quantum yield fluorescence centered at about 420 nm. To take advantage of this probe for confocal and single-molecule microscopy, it would be advantageous to be able to excite the analogue via two photons. We report the first determination of the two-photon excitation cross section and spectrum for 6MAP from 614 to 700 nm. The power dependence of the fluorescence indicates that emission results from the absorption of two photons. The one-photon and two-photon emission line shapes are identical within experimental error. A study of the concentration dependence of the fluorescence yield for one-photon excitation shows no measurable quenching up to about 5 microM. The maximum in the two-photon excitation spectrum gives a two-photon cross section, delta(TPE), of 3.4 +/- 0.1 Goeppert-Mayer (G.M.) at 659 nm, which correlates well with the one-photon absorption maximum. This compares quite favorably with cross sections of various naturally fluorescent biological molecules such as flavins and nicotiamide. In addition, we have also obtained the two-photon-induced fluorescence emission spectrum of quinine sulfate. It is approximately the same as that for one-photon excitation, suggesting that two-photon excitation of quinine sulfate may be used for calibration purposes.     

Anthozoa red fluorescent protein in biosensing

The identification and cloning of a red fluorescent protein (DsRed) obtained from Anthozoa corals has provided an alternative to commonly used green fluorescent proteins (GFPs) in bioanalytical and biomedical research. DsRed in tandem with GFPs has enhanced the feasibility of multicolor labeling studies. Properties of DsRed, for example high photostability, red-shifted fluorescence emission, and stability to pH changes have proven valuable in its use as a fluorescent tag in cell-biology applications. DsRed has some limitations, however. Its slow folding and tendency to form tetramers have been a hurdle. Several different mutational studies have been performed on DsRed to overcome these problems. In this paper, applications of DsRed in biosensing, specifically in FRET/BRET assays, whole-cell assays, and in biosensors, is discussed. In the future, construction of DsRed mutants with unique characteristics will further expand its applications in bioanalysis.     

A fluorescent polymer dots positive readout fluorescent quenching lateral flow sensor for ractopamine rapid detection

A fluorescent polymer dots positive readout and sensitive lateral flow assay (LFA) based on fluorescent quenching has been developed to detect ractopamine (Rac), a chemical residue in food, harmful to human health. Compared with traditional LFA strips, these fluorescent quenching LFA (FQLFA) strips provide a positive correlation method that allows users to obtain results from a weak fluorescent signal. The immunoassay strip scheme is based on the fact that fluorescent polymer dots (FPDs) in close proximity to gold nanoparticles (AuNPs) represent a strong fluorescent quenching. We show that the FQLFA strips can be used as a source to quantitatively analyze Rac in phosphate buffers (PB), swine urine and muscle tissue samples. The lowest detection limitation of the FQLFA was 0.16 ng mL⁻¹. Our results indicated that this novel scheme was more suitable for rapid detection of small molecules.     

A proton sponge-based fluorescent switch

A proton-triggered fluorescent switch was developed through direct connection of a proton sponge, 1,8-bis(dimethylamino)naphthalene to a fluorophore, 4-aminonaphthalimide. The molecular fluorescent switch was based on a photoinduced electron transfer (PET) mechanism. The fluorescent switch exhibited significant fluorescence enhancement upon binding the low-concentration protons in high pH aqueous solution. The high pK_a value (around 11) of the fluorescent switch could be ascribed to the nature of the proton sponge.     

PAMAM structure-based multifunctional fluorescent conjugates for improved fluorescent labelling of biomacromolecules

Fluorescent probes are of increasing interest in medicinal and biological applications for the elucidation of the structures and functions of healthy as well as tumour cells. The quality of these investigations is determined by the intensity of the fluorescence signal. High dye/carrier ratios give strong signals. However, these are achieved by the occupation of a high number of derivatisation sites and therefore are accompanied by strong structural alterations of the carrier. Hence, polyvalent substances containing a high number of fluorescent dyes would be favourable because they would allow the introduction of many dyes at one position of the compound to be labelled.A large number of different dyes have been investigated to determine the efficiency of coupling to a dendrimer scaffold and the fluorescence properties of the oligomeric dyes, but compounds that fulfil the requirements of both strong fluorescence signals and reactivities are rare. Herein we describe the synthesis and characterisation of dye oligomers containing dansyl-, 7-nitro-2,1,3-benzoxadiazol-4-yl- (NBD), coumarin-343, 5(6)-carboxyfluorescein and sulforhodamine B2 moieties based on polyamidoamine (PAMAM) dendrimers. The PAMAM dendrimers were synthesised by an improved protocol that yielded highly homogeneous scaffolds with up to 128 conjugation sites. When comparing the fluorescent properties of the dye oligomers it was found that only the dansylated dendrimers met the requirements of enhanced fluorescence signals. The dendrimer containing 16 fluorescent dyes was conjugated to the anti-epidermal-growth-factor receptor (EGFR) antibody hMAb425 as a model compound to show the applicability of the dye multimer compounds. This conjugate revealed a preserved immunoreactivity of 54%.We demonstrate the applicability of the dye oligomers to the efficient and applicable labelling of proteins and other large molecules that enables high dye concentrations and therefore high contrasts in fluorescence applications.     

Water-soluble, deep-red fluorescent squaraine rotaxanes

Eight fluorescent squaraine rotaxanes with deep-red absorption/emission wavelengths were prepared and assessed for chemical stability and suitability as water-soluble, fluorescent tracers. The most stable squaraine rotaxanes have four large stopper groups attached to the ends of the encapsulated squaraine, and two members of this structural class have promise as highly fluorescent tracers with rapid renal clearance and very low tissue uptake in living mice.     

Rate of excitation energy transfer between fluorescent dyes and nanoparticles

Because of the sensitivity of the rate of Coulomb interaction induced long range resonance energy transfer (RET) on the distance between the donor (D) and the acceptor (A) molecules, the technique of FRET (fluorescence resonance energy transfer) is popularly termed as “spectroscopic ruler” and is increasingly being used in many areas of biological and material science. For example, the phenomenon is used to monitor the in vivo separation between different (bio)polymers/units of (bio)polymers and hence the dynamics of various biomolecular processes. In this work, we examine the distance and the orientation dependence of RET in three different systems: (i) between a conjugated polymer and a fluorescent dye, (ii) between a nanometal particle (NMP) and a fluorescent dye and (iii) between two NMP. We show that in all the three cases, the rate of RET follows a distance dependence of d^−σ where exponent σ approaches 6 at large distance d (Förster type dependence) but has a value varying from 3–4 at short to intermediate distances.