Oligosaccharide analysis using anion attachment in negative mode electrospray mass spectrometry

Eleven different anionic species were able to form adducts with neutral oligosaccharides at low cone voltage in negative ion mode electrospray mass spectrometry. Among them, fluoride and acetate have the ability to significantly enhance the absolute abundance of [M - H](-) for neutral oliogosaccharides, which otherwise have low tendencies to deprotonate due to the lack of a highly acidic group. Evidence shows that the source of high abundances of [M - H](-) for neutral oligosaccharides arises from the decomposition of [M + F](-) and [M + Ac](-) with neutral losses of HF and HAc, respectively. The chloride adducts have the best stability among all the adduct species investigated, and chloride adducts consistently appeared in higher abundances relative to [M - H](-). In tandem mass spectrometry (ES-MS/MS) experiments, upon collision induced dissociation (CID), F(-) and Ac(-) adducts gave purely analyte-related product ions, i.e., no detection of the attaching anion and no incorporation of these anions into decomposition products. Cl(-) adducts produced both Cl(-) and analyte-related product ions. For the above three anions, CID of adduct species may be used for structural determination of neutral oligosaccharides because, in each case, structurally-informative fragment ions were produced. In the presence of F(-) and Ac(-), simultaneous detection of acidic and neutral oligosaccharides was achieved, because the problem of the presence of an acidic group that can impede the deprotonation of a neutral oligosaccharide was minimized. The ratio of Cl(-):non-Cl-containing product ions obtained in CID spectra of chloride adducts of disaccharides was used to differentiate anomeric configurations of disaccharides. Density functional theory (DFT) was employed to evaluate the optimized structures of chloride adducts of disaccharides, and it was found that chloride anions favor close contact with the hydrogen from the anomeric hydroxyl group. Multiple hydrogen bonding further stabilizes the chloride adduct.     

Mass spectral studies of meso-dialkyl, alkyl aryl and cycloalkyl calix(4)pyrroles under positive and negative ion electrospray ionization conditions

A series of meso-dialkyl, alkyl aryl and cycloalkyl calix(4)pyrroles (1-15) are studied under positive and negative ion electrospray ionization (ESI) conditions. The positive ion spectra show abundant [M + H](+) and [M + Na](+) ions and the negative ion spectra show the [M + Cl](-) (the Cl(-) ions from the solvent) and [M - H](-) ions. The collision induced dissociation (CID) spectra of [M + H](+), [M + Na](+), [M + Cl](-) and [M - H](-) ions are studied to understand their dissociation pathway and compared to that reported for M(+) under electron ionization (EI) conditions. The beta-cleavage process that was diagnostic to M(+) is absent in all the CID spectra of the ions studied under ESI. Dissociation of all the studied ions resulted in the fragment ions formed by sequential elimination of pyrrole (A) and/or dialkyl/alkyl aryl/cycloalkyl (B) groups involving hydrogen migration to pyrrole ring at each cleavage of A--B bond, which clearly reveals the arrangement of A and B groups in the calix(4)pyrroles. The source of hydrogen that migrates to pyrrole ring during A--B bond cleavage is investigated by the experiments on deuterated compounds and [M + D](+) ions; and confirmed that the hydrogen attached to pyrrole nitrogen, hydrogen on alpha-carbon of alkyl group and the H(+)/Na(+) ion that added during ESI process to generate [M + H](+)/[M + Na](+) ions involve in the migration. The yields of [M + Na](+) ions are found to be different for the isomeric meso-cycloalkyl compounds (cycloheptyl, and 2-, 3- and 4-methyl cyclohexyl) and for normal and N-confused calix(4)pyrroles. The isomeric methyl and 3-hydroxy/4-hydroxy phenyl calix(4)pyrroles show specific fragmentation pattern during the dissociation of their [M - H](-) ions.     

Observation of Na(+)-bound oligomers of quercetin in the gas phase

While developing a liquid chromatography/tandem mass spectrometry method for the analysis of the flavonoid quercitin, it was observed that quercetin (3,3',4',5,7-pentahydroxyflavone) exhibited clustering in both the positive and negative ion mode. Two series of positive ion clusters were observed; the first series corresponds to singly charged [2M + Na](+) at m/z 627.2 to [13M + Na](+) at m/z 3947.5, while the second series corresponds to doubly charged [7M + 2Na](2+) at m/z 1080.4 to [25M + 2Na](2+) at m/z 3798.5. In the negative ion mode, the behavior of quercetin parallels that of apigenin (4',5,7-trihydroxyflavone) in that [M + NO(3)](-), [2M + NO(3)](-), and [3M + NO(3)](-) were observed at m/z 364.1, 666.0, and 968.9, respectively; in addition, quercitin clusters with chloride ions ([2M + Cl](-) at m/z 638.9 and [3M + Cl](-) at m/z 940. 9) were observed. The results of tandem mass spectrometric examination of several cluster ions are reported.     

Elucidation of high micro-heterogeneity of an acidic-neutral trichotoxin mixture from Trichoderma harzianum by electrospray ionization quadrupole time-of-flight mass spectrometry

The high micro-heterogeneity of an acidic-neutral trichotoxin mixture from T. harzianum, PC01, was elucidated using a modern tandem mass spectrometer equipped with an electrospray ionization source, a hybrid quadrupole-orthogonal accelerator and a reflectron time-of-flight analyzer. The trichotoxins appeared predominantly in six possible doubly charged pseudo molecular ions with three different adducts (H, Na and K) as [M + 2H](2+), [M + H + Na](2+), [M + H + K](2+), [M + 2Na](2+), [M + Na + K](2+) and [M + 2K](2+). The singly charged pseudomolecular ions, [M + H](+), [M + Na](+) and [M + K](+), occurred only in low abundance when the cone voltages were higher than 30 V. Additional singly charged fragments, b(12) and y"6 (complementary N- and C-terminal fragments), were obtained in high abundance using high cone voltages. The peak patterns of both singly and doubly charged molecular adducts revealed that this trichotoxin mixture contained several components having 6-7 molecular masses with a consecutive 14 u difference among members in the same molecular adduct series. Furthermore, well resolved isotopic peaks of every doubly or singly charged ions and their reproducible peak intensity allowed the identification of the mixing of acidic trichotoxins 1 u molecular mass heavier than the neutral counterparts in the sample. Tandem mass spectrometric (MS/MS) analyses of various singly charged b(12) and y"6 ions supported the sequence deduction of the major and minor components and also the position of Glu in the sequences of these acidic molecules. The setting of either low or high resolution of the quadrupole mass filter unit together with a suitable variation of the collision voltage for any MS/MS precursor were the tools for extracting a number of mixed components and obtaining the major and minor sequences of these precursor peaks. The nature of the MS/MS fragmentation and the data assignment of three major doubly charged ions, [M + 2H](2+), [M + K + H](2+) and [M + 2K](2+), are demonstrated. Eleven new sequences of both acidic and neutral trichotoxins are reported.     

Oxidation of [Ru(NH3)5isn](BF4)2 by hyochlorous acid and chlorine in aqueous acidic media

UV-vis stopped-flow studies of the reaction of [Ru(NH3)5isn](2+) (isn = isonicotinamide) with excess HOCl at 25 degrees C demonstrate that it proceeds in two time-resolved steps. In the first step [Ru(NH3)5isn](3+) is produced with the rate law -d[Ru(II)]/dt = 2(aK(h)[H(+)] + b[H(+)][Cl(-)] + c[Cl(-)])[HOCl](tot)[Ru(II)]/(K(h) + [H(+)][Cl(-)]). Here, K(h) is 1.3 x 10(-3) M(2) and corresponds to the equilibrium hydrolysis of Cl2, a is (8.34 +/- 0.19) x 10(3) M(-2) s(-1) and represents the acid-assisted reduction of HOCl, b is (4.04 +/- 0.13) x 10(4) M(-1) s(-1) and represents the reduction of Cl2, and c is (6.25 +/- 0.59) x 10(2) s(-1) and represents the Cl(-)-assisted reduction of HOCl. In the second step [Ru(NH3)5isn](3+) undergoes further oxidation to a mixture of products with the rate law -d[Ru(III)]/dt = e[Ru(III)][HOCl]/[H(+)] where e is (1.18 +/- 0.01) x 10(-2) s(-1). This step is assigned a mechanism with Cl(+) transfer from HOCl to [Ru(III)(NH3)4(NH2)isn](2+) occurring in the rate-limiting step. These results underline the resistance of HOCl to act as a simple outer-sphere one-electron oxidant.     

Mono‐, di‐ and trimethylated homologues of isoprenoid tetraether lipid cores in archaea and environmental samples: mass spectrometric identification and significance

Higher homologues of widely reported C₈₆ isoprenoid diglycerol tetraether lipid cores, containing 0–6 cyclopentyl rings, have been identified in (hyper)thermophilic archaea, representing up to 21% of total tetraether lipids in the cells. Liquid chromatography‐tandem mass spectrometry confirms that the additional carbon atoms in the C_87‐88 homologues are located in the etherified chains. Structures identified include dialkyl and monoalkyl (‘H‐shaped’) tetraethers containing C_40‐42 or C_81‐82 hydrocarbons, respectively, many representing novel compounds. Gas chromatography‐mass spectrometric analysis of hydrocarbons released from the lipid cores by ether cleavage suggests that the C₄₀ chains are biphytanes and the C₄₁ chains 13‐methylbiphytanes. Multiple isomers, having different chain combinations, were recognised among the dialkyl lipids. Methylated tetraethers are produced by Methanothermobacter thermautotrophicus in varying proportions depending on growth conditions, suggesting that methylation may be an adaptive mechanism to regulate cellular function. The detection of methylated lipids in Pyrobaculum sp. AQ1.S2 and Sulfolobus acidocaldarius represents the first reported occurrences in Crenarchaeota. Soils and aquatic sediments from geographically distinct mesotemperate environments that were screened for homologues contained monomethylated tetraethers, with di‐ and trimethylated structures being detected occasionally. The structural diversity and range of occurrences of the C_87‐89 tetraethers highlight their potential as complementary biomarkers for archaea in natural environments. Copyright © 2015 John Wiley & Sons, Ltd.     

Even-electron ions: a systematic study of the neutral species lost in the dissociation of quasi-molecular ions

The collision-induced dissociations of the even-electron [M + H](+) and/or [M - H](-) ions of 121 model compounds (mainly small aromatic compounds with one to three functional groups) ionized by electrospray ionization (ESI) or atmospheric pressure chemical ionization (APCI) have been studied using an ion trap instrument, and the results are compared with the literature data. While some functional groups (such as COOH, COOCH(3), SO(3)H in the negative ion mode, or NO(2) in both the positive and negative ion modes) generally promote the loss of neutrals that are characteristic as well as specific, other functional groups (such as COOH in the positive ion mode) give rise to the loss of neutrals that are characteristic, but not specific. Finally, functional groups such as OH and NH(2) in aromatic compounds do not lead to the loss of a neutral that reflects the presence of these substituents. In general, the dissociation of [M + H](+) and [M - H](-) ions generated from aliphatic compounds or compounds containing an aliphatic moiety obeys the even-electron rule (loss of a molecule), but deviations from this rule (loss of a radical) are sometimes observed for aromatic compounds, in particular for nitroaromatic compounds. Thermochemical data and ab initio calculations at the CBS-QB3 level of theory provide an explanation for these exceptions. When comparing the dissociation behaviour of the even-electron [M + H](+) and/or [M - H](-) ions (generated by ESI or APCI) with that of the corresponding odd-electron [M](+) ions (generated by electron ionization, EI), three cases may be distinguished: (1) the dissociation of the two ionic species differs completely; (2) the dissociation involves the loss of a common neutral, yielding product ions differing in mass by one Da, or (3) the dissociations lead to a common product ion.     

Stereoselectivity in the formation of tris-diimine complexes of Fe(II), Ru(II), and Os(II) with a C2-symmetric chiral derivative of 2,2'-bipyridine

A C2-symmetric enantiopure 4,5-bis(pinene)-2,2'-bipyridine ligand (-)-L was used to investigate the diastereoselectivity in the formation of [ML3]2+ coordination species (M = Fe(II), Ru(II), Os(II), Zn(II), Cd(II), Cu(II), Ni(II)), and [ML2Cl2] (M = Ru(II), Os(II)). The X-ray structures of the [ML3]2+ complexes were determined for Delta-[FeL3](PF6)2, Delta-[RuL3](PF6)2, Lambda-[RuL3](PF6)2, Delta-[OsL3](PF6)2, and Lambda-[OsL3](TfO)2. All of these compounds were also characterized by NMR, CD and UV/VIS absorption spectroscopy. The [FeL3]2+ diastereoisomers were studied in equilibrated solutions at various temperatures and in several solvents. The [RuL3]2+ complexes, which are thermally stable up to 200 degrees C, were photochemically equilibrated.     

Positive and negative gas-phase ion chemistry of chlorofluorocarbons in air at atmospheric pressure

This paper presents a report on the ionization/dissociation of some representative chlorofluorocarbons (CFCs) induced by corona discharges in air at atmospheric pressure. Both positive and negative ions formed from Freons 1,1,1-trichlorotrifluoroethane (CFC 113a), 1,1,2-trichlorotrifluoroethane (CFC 113), and 1,1,1,2-tetrachlorodifluoroethane (CFC 112a) were analyzed using an atmospheric pressure chemical ionization mass spectrometry (APCI-MS) instrument. Energy-resolved mass spectra were obtained by modulating the kinetic energy of the ions via adjustment of the sampling cone potential (V(cone)). Positive ion spectra of the CFCs (M) at low V(cone) show no signals due to either M(+)* or MH(+) but only those due to species [M - Cl](+) and CX(3)(+) (X = Cl, F), likely formed via C-Cl and C-C bond cleavages following ionization via charge exchange. Charge localization in the products of C-C bond cleavage in M(+)* is driven by the stability of the neutral fragment. At low V(cone) the hydrates [M - Cl](+)(H(2)O) are also observed. In the case of 1,1,2,-trichlorotrifluoroethane, [M - F](+) species also form as a result of ion-molecule reactions. As V(cone) is increased collision-induced dissociation of [M - Cl](+) and [M - F](+), i.e., the perhalogenated cations C(2)X(5)(+) (X = Cl, F), takes place via carbene elimination. In some cases such elimination is preceded or accompanied by rearrangements involving transfer of halogen from one carbon to the other. Evidence is also presented for the occurrence of a condensation reaction of C(2)Cl(3)F(2)(+) with water to form a C(2)Cl(2)F(2)HO(+) species via elimination of HCl. Negative ion spectra are dominated by Cl(-) and its ion-neutral complexes with M and with water. Additional components of the plasma include ion-neutral complexes O(3)(-)(M), the molecular anion M(-) (observed only with 1,1,2-trichlorotrifluoroethane), and an interesting species corresponding to [M - Cl + O](-). The origin and structure of these [M - Cl + O](-) species are discussed in terms of available thermochemical and reactivity data and current mechanistic views concerning reaction of O(2)(-) with halogenated compounds. The observation of both positive and negative ions containing oxygen is of special relevance to development of new processes for the treatment of volatile organic compounds (VOCs) based on oxidative decomposition induced by corona discharges in air at room temperature and pressure.     

A family of Group 4 metal alkoxo complexes with an M3(mu3-O) core relevant to Ziegler-Natta catalyst intermediates

Reactions of [Mg(thffo)(2)] (1) or [Ca(thffo)(2)] (2) with ZrCl(4) or HfCl(4) in a CH(2)Cl(2)/THF/CH(3)CN mixture give thermally stable neutral heterobimetallic tetranuclear complexes [M(3)M'(mu(x)-O)(mu,eta(2)-thffo)(6)(Cl)(6)] (thffo=tetrahydrofurfuroxide; M/M'/x: 3, Zr/Mg/3; 4, Hf/Mg/3; 5, Zr/Ca/4; 6, Hf/Ca/4) as colorless crystals in 75-82 % yield. X-ray diffraction studies show complexes 3-5 to contain oxo-bridged M(3) triangles that are capped by an alkaline earth metal-containing moiety to form species of C(3) symmetry. Reactions of ZrCl(4) and HfCl(4) with pure tetrahydrofurfuryl alcohol in EtOH and MeOH provide ionic complexes [M(3)(mu(3)-O)(mu,eta(2)-thffo)(3)(L)(3)(Cl)(6)]Cl (M/L: 8, Zr/EtOH; 9, Hf/EtOH; 10, Zr/MeOH) in 66-79 % yield. Complexes 8-10 consist of M(3) triangles that are analogous to those in 3-6 and possess similar overall symmetry, as shown by X-ray crystallography. Changes in the reaction conditions afforded the asymmetric neutral dimer [Zr(2)(mu-thffo)(2)(thffoH)(Cl)(6)] (7) and the homometallic [Zr(3)(mu(3)-O)(mu,eta(2)-thp)(3)(thf)(2)(Cl)(7)] (11).     

Low-potential cyclometalated osmium(II) mediators of glucose oxidase

The osma(II)cycles [Os(phpy)(LL)(2)]PF(6) (LL = 1,10-phen (3a) and 4,4'-Me(2)-2,2'-bpy (3b)) are made from [(eta(6)-C(6)H(6))Os(micro-Cl)Cl](2) (1) either via transmetalation using the [Hg(phpy)(2)] organomercurial in MeOH or via the sp(2)-C-H bond cleavage of 2-phenylpyridine (phpyH) in MeCN to afford [(eta(6)-C(6)H(6))Os(phpy)Cl] or [(eta(6)-C(6)H(6))Os(phpy)(MeCN)]PF(6), respectively. The latter two react cleanly with LL to give 3a and 3b, the M(II/III) redox potentials of which equal 30 and -100 mV (vs Ag/AgCl), respectively. The electrochemically made Os(III) species oxidize rapidly reduced glucose oxidase. The second-order rate constant equals 1.1 x 10(7) M(-)(1) s(-)(1) for 3a at 25 degrees C, pH 7.     

Self-assembly of D-penicillaminato M6M'8 (M = Ni(II), Pd(II), Pt(II); M' = Cu(I), Ag(I)) clusters and their organization into extended La(III)M6M'8 supramolecular structures

A series of chiral M(6)M'(8) cluster compounds having twelve free carboxylate groups, [M(6)M'(8)(D-pen-N,S)(12)X](5-) (M/M'/X = Pd(II)/Ag(I)/Cl(-) ([1](5-)), Pd(II)/Ag(I)/Br(-) ([2](5-)), Pd(II)/Ag(I)/I(-) ([3](5-)), Ni(II)/Ag(I)/Cl(-) ([4](5-)), Pt(II)/Ag(I)/Cl(-) ([5](5-)), Pd(II)/Cu(I)/Cl(-) ([6](5-)); D-H(2)pen = D-penicillamine), in which six cis-[M(D-pen-N,S)(2)](2-) square-planar units are bound to a [M'(8)X](7+) cubic core through sulfur-bridges, was synthesized by the reactions of cis-[M(D-pen-N,S)(2)](2-) with M' in water in the presence of halide ions. These M(6)M'(8) clusters readily reacted with La(3+) in aqueous buffer to form La(III)(2)M(6)M'(8) heterotrimetallic compounds, La(2)[1](CH(3)COO), La(2)[2](CH(3)COO), La(2)[3](CH(3)COO), La(2)[4](CH(3)COO), La(2)[5](CH(3)COO) and La(2)[6]Cl, in which the M(6)M'(8) cluster units are linked by La(3+) ions through carboxylate groups in a 1?:?2 ratio. While the La(III)(2)M(6)Ag(I)(8) compounds derived from [1](5-), [2](5-), [3](5-), [4](5-) and [5](5-) have a 1D helix supramolecular structure with a right-handedness, the La(III)(2)Pd(II)(6)Cu(I)(8) compound derived from [6](5-) has a 2D sheet-like structure with a triangular grid of the Pd(II)(6)Cu(I)(8) cluster units. When aqueous HCl was added to the reaction solution of [6](5-) and La(3+), another La(III)(2)Pd(II)(6)Cu(I)(8) heterotrimetallic compound, La(2)[6]Cl·HCl, in which the Pd(II)(6)Cu(I)(8) cluster units are linked by La(3+) ions to form a 2D structure with a rectangular grid, was produced. The solid-state structures of these La(III)(2)M(6)M'(8) compounds, determined by single-crystal X-ray crystallography, along with the spectroscopic properties of the M(6)M'(8) cluster compounds in solution, are described.     

Characterization of inositol phosphorylceramides from <Emphasis Type="Italic">Leishmania major</Emphasis> by tandem mass spectrometry with electrospray ionization

We describe tandem mass spectrometric approaches, including multiple stage ion-trap and source collisionally activated dissociation (CAD) tandem mass spectrometry with electrospray ionization (ESI) to characterize inositol phosphorylceramide (IPC) species seen as [M - H](-) and [M - 2H + Li](-) ions in the negative-ion mode as well as [M + H](+), [M + Li](+), and [M - H + 2Li](+) ions in the positive-ion mode. Following CAD in an ion-trap or a triple-stage quadrupole instrument, the [M - H](-) ions of IPC yielded fragment ions reflecting only the inositol and the fatty acyl substituent of the molecule. In contrast, the mass spectra from MS(3) of [M - H - Inositol](-) ions contained abundant ions that are readily applicable for assignment of the fatty acid and long-chain base (LCB) moieties. Both the product-ion spectra from MS(2) and MS(3) of the [M - 2H + Alk](-), [M + H](+), [M + Alk](+), and [M - H + 2Alk](+) ions also contained rich fragment ions informative for unambiguous assignment of the fatty acyl substituent and the LCB. However, the sensitivity of the ions observed in the forms of [M - 2H + Alk](-), [M + H](+), [M + Alk](+), and [M - H + 2Alk](+) (Alk = Li, Na) is nearly 10 times less than that observed in the [M - H](-) form. In addition to the major fragmentation pathways leading to elimination of the inositol or inositol monophosphate moiety, several structurally informative ions resulting from rearrangement processes were observed. The fragmentation processes are similar to those previously reported for ceramides. While the tandem mass spectrometric approach using MS(n) (n = 2, 3) permits the structures of the Leishmania major IPCs consisting of two isomeric structures to be unveiled in detail, tandem mass spectra from constant neutral loss scans may provide a simple method for detecting IPC in mixtures.     

Collisionally-induced dissociation of substituted pyrimidine antiviral agents: Mechanisms of ion formation using gas phase hydrogen/deuterium exchange and electrospray ionization tandem mass spectrometry

ESI and CID mass spectra were obtained for four pyrimidine nucleoside antiviral agents and the corresponding compounds in which the labile hydrogens were replaced by deuterium using gas-phase exchange. The number of labile hydrogens, x, was determined from a comparison of ESI spectra obtained with N(2) and with ND(3) as the nebulizer gas. CID mass spectra were obtained for [M + H](+) and [M - H](-) ions and the exchanged analogs, [M(D(x)) + D](+) and [M(D(x)) - D](-), produced by ESI using a SCIEX API-III(plus) mass spectrometer. Protonated pyrimidine antiviral agents dissociate through rearrangement decompositions of base-protonated [M + H](+) ions by cleavage of the glycosidic bonds to give the protonated bases with a sugar moiety as the neutral fragment. Cleavage of the glycosidic bonds with charge retention on the sugar moiety eliminates the base moiety as a neutral molecule and produces characteristic sugar ions. CID of protonated pyrimidine bases, [B + H](+), occurs through three major pathways: (1) elimination of NH(3) (ND(3)), (2) loss of H(2)O (D(2)O), and (3) elimination of HNCO (DNCO). Protonated trifluoromethyl uracil, however, dissociates primarily through elimination of HF followed by the loss of HNCO. CID mass spectra of [M - H](-) ions of all four antiviral agents show NCO(-) as the principal decomposition product. A small amount of deprotonated base is also observed, but no sugar ions. Elimination of HNCO, HN(3), HF, CO, and formation of iodide ion are minor dissociation pathways from [M - H](-) ions.     

Ferromagnetic coupling promoted by kappa3N:kappa2N bridging system

Syntheses, structures, and magnetic properties of novel trinuclear complexes of the same motif [M{Cu(pz2bg)2}M]4+ (M = CuII, NiII, CoII, MnII), catena-[Cu2{Cu(pz2bg)2}(Hpz)2(PhSO3)2](PhSO3)2.4H2O (2.4H2O), [Ni2{Cu(pz2bg)2}(MeOH)2(H2O)4](NO3)4 (3), [Co2{Cu(pz2bg)2}(NO3)2(EtOH)2](NO3)2 (4), and [Mn2{Cu(pz2bg)2}(NO3)4(MeCN)2] (5), which include the complex ligand [Cu(pz2bg)2] (1), are reported (Hpz = pyrazole, pz2bg- = di(pyrazolecarbimido)aminate; bispyrazolyl derivative of biguanidate). The reaction of Cu(ClO4)2.6H2O, sodium dicyanamide, Hpz, and PhSO3H.H2O (1:2:4:4) in MeOH yielded blue crystals of [Cu2(1)(Hpz)2(PhSO3)2](PhSO3)2.4H2O (2.4H2O). In 2, the tricopper(II) units, which consist of two Cu(II) ions bridged by 1, are linked by benzenesulfonate anions to form a ladder structure. Complex 1 was isolated by removing the terminal Cu(II) ions from 2 with use of Na(4)edta. Complexes 3-5 were obtained by the reaction of 1 with an excess of each M(II) ion. In 2-5, the adjoining metal ions are ferromagnetically coupled via the pz2bg- ligand with J values of +7.2(1), +7.5(1), +2.7(1), and +0.3(1) cm(-1), respectively, using a spin Hamiltonian H = -2J(S(M1)S(Cu) + S(Cu)S(M2)). The ferromagnetic interaction was attributed to the strict orthogonality of magnetic dsigma orbitals, which are controlled by the kappa3N:kappa2N bridging geometry of the pz2bg- ligands.     

Disappearance of interfering alkali-metal adducted peaks from matrix-assisted laser desorption/ionization mass spectra of peptides with serine addition to alpha-cyano-4-hydroxycinnamic acid matrix

It has been described that ion yield in both positive- and negative-ion matrix-assisted laser desorption/ionization mass spectrometry (MALDI MS) of peptides is often inhibited by trace amounts of alkali metals and that the MALDI mass spectra are contaminated by the interfering peaks originating from traces of alkali metals, even when sample preparation is carefully performed. Addition of serine to the commonly used MALDI matrix alpha-cyano-4-hydroxycinnamic acid (CHCA) significantly improved and enhanced the signals of both protonated and deprotonated peptides, [M+H](+) and [M-H](-). The addition of serine to CHCA matrix eliminated the alkali-metal ion adducts, [M+Na](+) and [M+K](+), and the CHCA cluster ions from the mass spectra. Serine and serinephosphate as additives to CHCA enhanced and improved the formation of molecular-related ions of phosphopeptides in negative-ion MALDI mass spectra.     

Effects of transition metal ion coordination on the collision-induced dissociation of polyalanines

Transition metal-polyalanine complexes were analyzed in a high-capacity quadrupole ion trap after electrospray ionization. Polyalanines have no polar amino acid side chains to coordinate metal ions, thus allowing the effects metal ion interaction with the peptide backbone to be explored. Positive mode mass spectra produced from peptides mixed with salts of the first row transition metals Cr(III), Fe(II), Fe(III), Co(II), Ni(II), Cu(I), and Cu(II) yield singly and doubly charged metallated ions. These precursor ions undergo collision-induced dissociation (CID) to give almost exclusively metallated N-terminal product ions whose types and relative abundances depend on the identity of the transition metal. For example, Cr(III)-cationized peptides yield CID spectra that are complex and have several neutral losses, whereas Fe(III)-cationized peptides dissociate to give intense non-metallated products. The addition of Cu(II) shows the most promise for sequencing. Spectra obtained from the CID of singly and doubly charged Cu-heptaalanine ions, [M + Cu - H](+) and [M + Cu](2+) , are complimentary and together provide cleavage at every residue and no neutral losses. (This contrasts with [M + H](+) of heptaalanine, where CID does not provide backbone ions to sequence the first three residues.) Transition metal cationization produces abundant metallated a-ions by CID, unlike protonated peptides that produce primarily b- and y-ions. The prominence of metallated a-ions is interesting because they do not always form from b-ions. Tandem mass spectrometry on metallated (Met = metal) a- and b-ions indicate that [b(n) + Met - H](2+) lose CO to form [a(n) + Met - H](2+), mimicking protonated structures. In contrast, [a(n) + Met - H](2+) eliminate an amino acid residue to form [a(n-1) + Met - H](2+), which may be useful in sequencing.     

Facially coordinating cyclic triamines, part I. The coordination chemistry of cis-3,5-diaminopiperidine and substituted derivatives

An efficient and convenient method for the preparation of cis-3,5-diaminopiperidine (dapi) has been established and the coordination chemistry of this ligand with CoII, CoIII, NiII, CuII, ZnII, and CdII has been investigated in the solid state and in aqueous solution. Potentiometric measurements revealed a generally high stability for the bis complexes of the divalent cations with maximum stability for NiII (log beta2 = 21.2, beta2 = [M(dapi)2][M](-1)[dapi](-2), 25 degrees C, mu = 0.1 mol dm(-3)). Cyclic voltammetry established quasi-reversible formation of [Ni(dapi)2]3+ with a redox potential of 0.91 V (versus NHE) for the Ni(II/III) couple. [Co(dapi)2]3+ was prepared by aerial oxidation of the corresponding CoII precursor. The two isomers trans-[Co(dapi)2]3+ (1(3+), 26%) and cis-[Co(dapi)2]3+ (2(3+), 74%), have been separated and isolated as solid Cl- and CF3SO3- salts. In a non-aqueous medium 1(3+) and 2(3+) reacted with paraformaldehyde and NEt3 to give the methylidene-imino derivatives 3(3+) and 4(3+), in which the two piperidine rings are bridged by two or one N-CH2-O-CH2-N bridges, respectively. Crystal structure analyses were performed for H3dapi[ZnCl4]Cl, 1Cl3 x 2H2O, 2Cl3 x H2O, 3[ZnCl4]Cl, 4[ZnCl4]Cl, [Ni(dapi)2]Cl2 x H2O, [Cu(dapi)2](NO3)2, [Cu(dapi)Cl2], [(dapi)ClCd-(mu2-Cl)2-CdCl(dapi)], and [Co(dapi)(NO2)(CO3)]. The stability of [M(II)(dapi)]2+ and [M(II)(dapi)2]2+ complexes in aqueous solution, particularly the remarkably high tendency of [M(dapi)]2+ to undergo coordinative disproportionation is discussed in terms of the specific steric requirements of this ligand. Molecular mechanics calculations have been performed to analyze the different types of strain in these complexes. A variety of alkylated derivatives of dapi have been prepared by reductive alkylation with formaldehyde, benzaldehyde, salicylaldehyde, and pyridine-2-carbaldehyde. The NiII complexes of the pentadentate N3,N5-bis(2-pyridinylmethyl)-cis-3,5-diaminopiperidine (py2dapi) and the hexadentate N3,N5,1-tris(2-pyridinylmethyl)-cis-3,5-diaminopiperidine (py3dapi) have been isolated as crystalline ClO4- salts [Ni(py2dapi)Cl]ClO4 and [Ni(py3dapi)](ClO4)2 x H2O and characterized by crystal structure analyses.     

Monometallic and dimetallic ruthenium(II)-terpyridine complexes employing the tetradentate ligands dipyridylpyrazolyl,dipyridyloxadiazole, and their dimethyl derivatives

The tetradentate ligands, 2,2'-(1H-pyrazole-3,5-diyl)bis(4- methylpyridine) (4,4'-Me2dppzH), 2,2'-(1H-pyrazole-3,5-diyl)bis(6-methylpyridine) (6,6'-Me2dppzH), 3,5-di(pyrid-2-yl)pyrazole (dppzH), and dipyridyloxadiazole (dpo) react with either Ru(trpy)Cl3 or trans-Ru(trpy)Cl2(NCCH3), where trpy is 2,2',2'-terpyridine, to form a variety of Ru(II) complexes. Among these are the symmetrical chloro-bridged Ru(II) dimer and the "in" and "out" geometric isomers of the monometallic Ru(II) containing species where "in" and "out" refer to the orientation of the Ru-Cl vector relative to the centroid of the ligand backbone. Thirteen complexes were prepared and painstakingly purified by careful recrystallization and/or exhaustive column chromatography. These complexes were characterized by 1H and 13C NMR, electronic absorption, and infrared spectroscopy. Additionally, [Ru2(tryp)2(6,6'-Me2dppz)mu-Cl](BF4)2 (3b(BF4)2), [Ru2(trpy)2(4,4'-Me2dppz)mu-Cl](PF6)2.0.5MeOH (3c), [Ru2(trpy)2(6,6'-Me2dppz)(CH2C(O)CH3)](PF6)2.0.5(CH3)2CO (9b), "in"-[Ru(trpy)(4,4'-Me2dppz)Cl](PF6).(CH3)2CO (1c), and "out"-[Ru(trpy)(dpo)Cl](PF6).(CH3)2CO (2d) were characterized by X-ray crystallography. Several ligand substitution reactions were attempted. For example, [Ru2(trpy)2(6,6'-Me2dppz)mu-Cl](BF4)2 (3b) was reacted with hydroxide ion to produce [Ru2(trpy)2(6,6'-Me2dppz)mu-OH](PF6)2 (6b). Complex 6b reacts with benzyl bromide to produce [Ru2(trpy)2(6,6'-Me2dppz)mu-Br](PF6)2 (7b) or with (CH3)3Sil to produce [Ru2(trpy)2(6,6'-Me2dppz)mu-I](PF6)2 (8b). of 6b with acetone forms the methyl enolate complex [Ru2(trpy)2(6,6'-Me2dppz)(CH2COCH3)](PF6)2 (9b) while, analogously to a Cannizarro reaction, the reaction with benzaldehyde forms the bridging benzoate complex [Ru2(trpy)2(6,6'-Me2dppz)(C6H4CO2)](PF6)2 (11b). The bridging azide complex [Ru2(trpy)2(6,6'-Me2dppz)mu-N3](PF6)2 (10b) is formed by reaction of 6b with (CH3)3-SiN3. Additionally, the chloride ligands of the monometallic complexes of "in"-[Ru(trpy)(dpo)Cl](PF6) (1d), "in"-[Ru(trpy)(4,4'-Me2dpo)Cl](PF6)] (1e), and "out"-[Ru(trpy)(dpo)Cl](PF6) (2d) were substituted with water to form their respective aqua complexes, 4d, 4e, and 5d. All of the complexes exhibit broad unsymmetrial absorption bands in the visible portion of the electromagnetic spectrum. The dimetallic complexes 3b and 3c exhibit two, 1e- reversible oxidation waves at +0.72 and +1.15 V, and at +0.64 and +1.13 V, respectively. These complexes were not emissive.     

Electrospray ionization mass spectrometry of ginsenosides

Ginsenosides R(b1), R(b2), R(c), R(d), R(e), R(f), R(g1), R(g2) and F(11) were studied systematically by electrospray ionization mass spectrometry in positive- and negative-ion modes with a mobile-phase additive, ammonium acetate. In general, ion sensitivities for the ginsenosides were greater in the negative-ion mode, but more structural information on the ginsenosides was obtained in the positive-ion mode. [M + H](+), [M + NH(4)](+), [M + Na](+) and [M + K](+) ions were observed for all of the ginsenosides studied, with the exception of R(f) and F(11), for which [M + NH(4)](+) ions were not observed. The signal intensities of [M + H](+), [M + NH(4)](+), [M + Na](+) and [M + K](+) ions varied with the cone voltage. The highest signal intensities for [M + H](+) and [M + NH(4)](+) ions were obtained at low cone voltage (15-30 V), whereas those for [M + Na](+) and [M + K](+) ions were obtained at relatively high cone voltage (70-90 V). Collision-induced dissociation yielded characteristic positively charged fragment ions at m/z 407, 425 and 443 for (20S)-protopanaxadiol, m/z 405, 423 and 441 for (20S)-protopanaxatriol and m/z 421, 439, 457 and 475 for (24R)-pseudoginsenoside F(11). Ginsenoside types were identified by these characteristic ions and the charged saccharide groups. Glycosidic bond cleavage and elimination of H(2)O were the two major fragmentation pathways observed in the product ion mass spectra of [M + H](+) and [M + NH(4)](+). In the product ion mass spectra of [M - H](-), the major fragmentation route observed was glycosidic bond cleavage. Adduct ions [M + 2AcO + Na](-), [M + AcO](-), [M - CH(2)O + AcO](-), [M + 2AcO](2-), [M - H + AcO](2-) and [M - 2H](2-) were observed at low cone voltage (15-30 V) only.