Ab initio computation of the potential energy surfaces of the water·hydrocarbon complexes H2O·C2H2, H2O·C2H4 and H2O·CH4: minimum energy structures, vibrational frequencies and hydrogen bond energies

On the basis of ab initio MP2/6–31 + + G(2d,2p) calculations, we examined the potential energy surfaces of the water·hydrocarbon complexes H₂O·CH₄, H₂O·C₂H₂ and H₂O·C₂H₂ to locate all the minimum energy structures and estimate the hydrogen bond energies and vibrational frequencies associated with the C(spⁿ)---H·O and the O---H·C(spⁿ) bonds (n = 1−3). Our calculations show that H₂O·C₂H₂, H₂O·C₂H₄ and H₂O·CH₄ have two minimum energy structures (i.e., the C---H·O and O---H·C hydrogen bond forms), but H₂O·C₂H₄ has only one when the vibrational motion is taken into account, the O---H·C hydrogen bond form. We have also computed the barrier for the interconversion from one minimum to the other. The fully optimized geometries of H₂O·CH₄, H₂O·C₂H₄ and H₂O·C₂H₂ as well as the vibrational shifts of the C---H stretching frequencies in their C---H·O hydrogen-bonded forms are in good agreement with the available experimental data. The calculated hydrogen bond energies show that the C(spⁿ---H·O bond strengths decrease in the order C(sp)---H·O>C(sp²)---H·O>C(sp³)---O>C(sp³---H·O, which is also consistent with the available experimental data.     

Infrared study of νOD modes in isotopically dilute (HDO) isostructural compounds M(HCOO)2·2H2O (M=Mn,Fe,Co,Ni,Cu,Zn) with matrix-isolated guest ions (Cu in M(HCOO)2·2H2O and M in Cu(HCOO)2·2H2O)

The infrared spectra of isotopically dilute (matrix-isolated HDO molecules) isostructural compounds M(HCOO)₂·2H₂O (M=Mn,Fe,Co,Ni,Zn,Cu) are presented and discussed in the region of the OD stretching modes. According to the structural data the compounds under study are divided into two groups: in M(HCOO)₂·2H₂O (M=Mn,Ni,Zn) the H₂O(1) molecules form stronger hydrogen bonds as compared to H₂O(2); in M(HCOO)₂·2H₂O (M=Fe,Co,Cu) the H₂O(2) molecules form stronger hydrogen bonds as compared to the H₂O(1) molecules. The influence of the metal–water interactions (synergetic effect) and the unit-cell volumes (repulsion potential of the lattice) on the hydrogen bond strength within the isostructural series is discussed. The wavenumbers of the uncoupled OD stretching modes of the HDO molecules influenced by guest ions (Cu²⁺ ions matrix-isolated in M(HCOO)₂·2H₂O and M²⁺ ions matrix-isolated in Cu(HCOO)₂·2H₂O) are presented and commented. For example, the analysis of the spectra reveals that when Cu²⁺ ions are included in the structure of M(HCOO)₂·2H₂O the hydrogen bonds of the type M–OH₂OCHO–Cu are considerably weaker as compared to those of the same type formed when M²⁺ ions are included in the structure of Cu(HCOO)₂·2H₂O if the cations remain unchanged.     

低阶煤中氢键作用的色散校正密度泛函理论研究

本研究以苯酚…苯酚、苯酚…苯、苯酚…二苯醚、苯酚…喹啉和苯甲酸…苯甲酸为对象，采用色散校正的密度泛函理论分别研究褐煤中自缔合OH、OH-π、OH-醚O、OH-N和COOH-COOH之间形成的氢键。此外，还研究了氢键供体中取代基(CH₃-、CH₃O-、OH-、NH₂-、COOH-和NO₂-)对氢键的影响。对上述复合物进行了几何优化，并计算了能量、Mulliken电荷分布及振动频率。从优化的结构中可以看出上述复合物之间都存在氢键，所有复合物中O-H键键长都比苯酚中自由羟基的长，这表明这些复合物之间存在相互作用。其中，羧酸…羧酸复合物中O-H键的键长最长。此外，通过Mulliken电荷分布可看出上述复合物之间存在电荷转移。基于振动频率分析，所有的O-H键伸缩振动都发生了红移，尤其是羧酸…羧酸和苯酚…喹啉复合物，这可为煤中羟基振动的红外光谱分析提供依据。根据键能不同氢键强度按以下顺序依次递减：COOH-COOH>OH-N > 自缔合OH≈OH-醚O > OH-π，这与振动频率的分析结果一致。此外，不同取代基对氢键作用的影响不同。     

Syntheses,Crystal Structures and Luminescent Properties of Three New Gallium Complexes Containing Pyridine-2,6-dicarboxylic Acid

Three new gallium complexes formulated as [Ga(PDA)₂][Ga(H₂O)(PDA)(phen)]·4H₂O(1), [Ga(PDA)₂]· (H₂IN)·2H₂O(2) and [Ga(OH)(PDA)(H₂O)]₂(3)(H₂PDA=pyridine-2,6-dicarboxylic acid; phen=1,10-phenanthroline; HIN=isonicotinic acid) have been synthesized under hydrothermal conditions. In the mixed-ligand system of complex 1, PDA^2? and phen are connected to the central Ga³⁺ cation as tri- and bi-dentate ligands, respectively. In complex 2, each Ga³⁺ cation is six-coordinated by two PDA^2? anions octahedrally. Complex 3 shows a binuclear structure, with the bond distance of Ga1-Ga2 being 0.30061(3) nm. The 3D supramolecular structures of the three complexes are constructed via hydrogen bonds and aromatic π-π packing interactions. All the three complexes exhibit intense blue emission at room temperature in the solid state, which are attributed to π^*-π transition centered on the ligands.     

Supramolecular formation by aromatic ring stacking and hydrogen bonding in lanthanide(III) complexes with amino acids and 1,10-phenanthroline

[Eu(ABA)(phen)₂(H₂O)₃](ClO₄)₃·3phen·4.5H₂O (1) and [Eu(Val)(phen)₂(H₂O)₃](ClO₄)₃·3phen·2H₂O (2) are two new europium complexes with amino acids and 1,10-phenanthroline (phen=1,10-phenanthroline, ABA=-amino butyl acid, Val= -valine). Their crystal structures were measured by X-ray crystallography. Europium atoms in both complexes are nine-coordinated with bidentate 1,10-phenanthroline and carboxylate anion of amino acids, and water molecules. In the solid state, 1 and 2 have a structure involving aromatic stacking of the coordinated and non-coordinated 1,10-phenanthroline and the oxygen atoms of non-coordinated perchlorate anions being H-bond acceptors connect [Eu(ABA)(phen)₂(H₂O)₃]³⁺·3phen·4.5H₂O or [Eu(Val)(phen)₂(H₂O)₃]³⁺·3phen·2H₂O in their structures. In their interactions, several C–HO bonds play an important role. Owing to their different amino acid ligands and the number of lattice water molecules, there is some difference in their hydrogen bond patterns in 1 and 2. The side chain of -valine is involved in the formation of C–HO bonds. Hydrogen bond and π–π interactions determine the supramolecular formation of three-dimensional net works of both complexes.     

Interaction configurations of H2O molecules in a protein (Stratum Corneum) by infrared spectrometry

The procedure previously used to determine the interaction configurations of H₂O molecules in various polysaccharides is applied to a protein: Stratum Corneum (SC). It consists of following by infrared (IR) spectrometry the evaporation, heating and addition of water to a SC membrane. Analyses of the spectra corresponding to these experiments show that even H₂O molecules in equilibrium with the atmosphere are inserted in the protein itself and are held by one hydrogen bond which they accept from an N---H group of the protein and at least one hydrogen bond which they establish (donate) on a C=O group of the protein. At higher concentrations of water, H₂O molecules aggregate and form microdroplets embedded in the protein. Addition of water followed by evaporation of the added H₂O molecules results in an enhancement of the number of hydrogen bonds of type N---HO=C inside the protein. It makes water molecules appear as catalysts to rebuild hydrogen bonds in the protein.     

NMR studies of solid state—solvent and H/D isotope effects on hydrogen bond geometries of 1:1 complexes of collidine with carboxylic acids

¹H and ¹⁵N NMR spectra of 10 complexes exhibiting strong OHN hydrogen bonds formed by ¹⁵N-labeled collidine and different proton donors, partially deuterated in mobile proton sites, have been observed by low-temperature NMR spectroscopy using a low-freezing CDF₃/CDF₂Cl mixture as polar aprotic solvent. The following proton donors have been used: HCl, formic acid, acetic acid, various substituted benzoic acids and HBF₄. The slow hydrogen bond exchange regime could be reached below 140 K, which allowed us to resolve ¹⁵N signal splittings due to H/D isotopic substitution. The valence bond order model is used to link the observed NMR parameters to hydrogen bond geometries. The results are compared to those obtained previously [Magn. Reson. Chem. 39 (2001) S18] for the same complexes in the organic solids. The increase of the dielectric constant from the organic solids to the solution (30 at 130 K) leads to a change of the hydrogen bond geometries along the geometric correlation line towards the zwitterionic structures, where the proton is partially transferred from oxygen to nitrogen. Whereas the changes of spectroscopic and, hence, geometric parameters are small for the systems which are already zwitterionic in the solid state, large changes are observed for molecular complexes which exhibit almost a full proton transfer from oxygen to nitrogen in the polar liquid solvent.     

Matrix isolation and ab initio studies of the H2S---CO complex

The structure, energetics, and vibrational properties of complexes formed between H₂S and CO have been investigated by matrix isolation FTIR spectroscopy and ab initio molecular orbital theory. Two stable computational minima were found representing nearly linear hydrogen bonds between the subunits. The H₂S---CO and H₂S---OC species were calculated to be bound by 5.22 and 1.54 kJ mol⁻¹, respectively. The computational results were reproduced by experimental assignments for the carbon attached complex. The stretching vibrations of the complex subunits were found to be similarly perturbed upon complexation both experimentally and computationally.     

Infrared study of νOD modes in isotopically dilute (HDO) kieserite-type compounds MXO4·H2O (M=Mn, Co, Ni, Zn, and X=S, Se) with matrix-isolated M′ and X′O4 guest ions

The hydrogen bond strength in kieserite-type sulfate and selenate monohydrates has been studied by the method of double-matrix spectroscopy. The infrared spectra of isotopically dilute (matrix-isolated HDO molecules) kieserite-type compounds MXO₄·H₂O (M=Mn, Co, Ni, Zn, and X=S, Se) with matrix-isolated X′O₄²⁻ and M′²⁺ guest ions are presented and discussed in the region of the OD stretching modes. The OD frequencies indicate that the compounds under investigation form comparatively strong hydrogen bonds. The frequency shifts of the uncoupled OD stretching modes of the HDO molecules within the isostructural series and those influenced by the guest ions, and the strength of the hydrogen bonds formed, are discussed in terms of the respective O_wO distances, which hint at stronger hydrogen bonds for the sulfate series than for the selenate one by mistake, the larger hydrogen bond acceptor capability of SeO₄²⁻ ions compared to SO₄²⁻ ones, the different metal–water interactions and repulsion potentials of the lattice, and the reorientation of the water molecules caused by the guest ions. The shifts of the OD stretches of the ODOSe′O₃ bonds (Se′O₄²⁻ matrix isolated) to the lower wavenumbers as compared to the parent selenates are caused by the reorientation of the hydrate water molecules and strengthening the hydrogen bond to the stronger acceptor and vice versa. When smaller metal ions having smaller M–OH₂ bond lengths and, hence, stronger synergetic effect replace larger ones, the OD stretches are shifted to lower wavenumbers as compared to those due to the host M–O_wO bonds and vice versa.     

Photolysis of water/dicyanoacetylene complexes: an infrared matrix isolation and theoretical study

The structure and energy of the 1:1 complexes formed between dicyanoacetylene and water (D₂O) in argon matrix are investigated using FTIR spectroscopy and ab initio calculations at the B3LYP/6-31g** level of theory. Two types of 1:1 complexes are observed. The first one corresponds to the NH structure characterized by a hydrogen bond between H₂O and one of the nitrogen of dicyanoacetylene. The second corresponds to the CO form which involves a van der Waals interaction between the Cβ of dicyanoacetylene and the oxygen of water.

These complexes were irradiated with an Hg–Xe lamp at 10 K. Two products were observed by FTIR spectroscopy. The first one corresponds to the Isonitrile:H₂O complexes formation. The second one, resulting from the reaction of water on the photolyzed dicyanoacetylene, corresponds to the cyanoketene:HCN complex formation.     

Some ab initio valence bond studies of the H5 anion

The results of some ab initio valence bond calculations with 1s basis sets are reported for the anion H⁻₅ as H₂H⁻H₂. Both single-zeta and double-zeta calculations have been performed, with attention given primarily to the results of the single-zeta calculations. For the latter calculations, it is shown that both polarization of the H₂ bonds, and charge transfer from the H⁻ to the H₂ contribute to the binding of the linear anion. In order that bending may occur, it is necessary in these calculations to include a 1s midbond function, whose exponent is the same as that for the 1s atomic orbital of the H⁻. The midbond function is located midway between the hydrogen atoms that are adjacent to the H⁻. With a single-zeta basis, the calculated bond angle is 165°.     

Formation of hydrogen-bonded chains between a strong base with guanidine-like character and phenols with various pKa values - an FT-IR study

The complexes formed by phenols with 1,3,4,6,7,8-hexahydro-l-methyl-2H-pyrimido[1,2-a]pyrimidine (mTBD), an N-base with guanidine-like character, were studied as a function of the pK_a of the phenols by FT-IR spectroscopy. The following phenols were used: 4-cyanophenol (4-CNPh), pentachlorophenol (PCP) and 2,6-dichloro-4-nitrophenol (DNPh). In the case of chloroform solutions of 1: 1 mixtures of the phenols with MTBD the corresponding complexes are formed completely. With increasing acidity of the phenols the hydrogen bonds become increasingly asymmetrical. The O … N ⁻O … H⁺N hydrogen bond in the 4-CNPh-MTBD complex shows large proton polarizability. In the other cases only the polar structure is realized. With increasing phenol MTBD ratio, the formation of chains with two phenol molecules is observed. With decreasing pK_a of the phenols the fluctuation is limited to the phenol-phenolate bond and finally, the phenol-protonated MTBD bond begins to dissociate. In acetonitrile solutions, N⁺H …O⁻ hydrogen bonds are observed in the case of the 1:1 mixture of 4-CNPh with MTBD. A weak continuum indicates the presence of homoconjugated phenol-phenolate bonds with large proton polarizability. In the case of 2:1 mixtures only protonated MTBD and homoconjugated phenol-phenolate bonds are observed, independent of the pK_a of the phenols. The results are discussed with regard to the proton pathway in bacteriorhodopsin.     

Formation of hydrogen-bonded chains between a strong base with guanidine-like character and phenols with various pKa values - an FT-IR study

The complexes formed by phenols with 1,3,4,6,7,8-hexahydro-1-methyl-2H-pyrimido[1,2-a]pyrimidine (mTBD), an N-base with guanidine-like character, were studied as a function of the pK_a of the phenols by FT-IR spectroscopy. The following phenols were used: 4-cyanophenol (4-CNPh), pentachlorophenol (PCP) and 2,6-dichloro-4-nitrophenol (DNPh). In the case of chloroform solutions of 1:1 mixtures of the phenols with MTBD the corresponding complexes are formed completely. With increasing acidity of the phenols the hydrogen bonds become increasingly asymmetrical. The OH … N ⁻O … H⁺N hydrogen bond in the 4-CNPh-MTBD complex shows large proton polarizability. In the other cases only the polar structure is realized. With increasing phenol MTBD ratio, the formation of chains with two phenol molecules is observed. With decreasing pK_a of the phenols the fluctuation is limited to the phenol-phenolate bond and finally, the phenol-protonated MTBD bond begins to dissociate. In acetonitrile solutions, N⁺H … O⁻ hydrogen bonds are observed in the case of the 1:1 mixture of 4-CNPh with MTBD. A weak continuum indicates the presence of homoconjugated phenol-phenolate bonds with large proton polarizability. In the case of 2:1 mixtures only protonated MTBD and homoconjugated phenol-phenolate bonds are observed, independent of the pK_a of the phenols. The results are discussed with regard to the proton pathway in bacteriorhodopsin.     

两个基于氢键构筑的超分子镁配合物的合成、 晶体结构及荧光性质

以5,6-苯并咪唑二酸(H₃bidc)为有机配体, 在水热条件下通过控制反应温度得到了2个镁配合物[Mg(Hbidc)(H₂O)₄](1) 和 [Mg(Hbidc)(H₂O)₅]·4H₂O(2). 通过单晶及粉末X 射线衍射、 红外光谱、 元素分析和热重分析对配合物进行了表征. 结果表明, 配合物1和2均为单核分子, 分别以不同的堆积方式通过氢键构筑成三维超分子结构. 值得注意的是, 配合物2的结构中捕获了由氢键连接的环状四聚体水簇(H₂O)₄. 配合物1和2的电荷布居分析结果与晶体结构的讨论一致. 此外, 固体荧光分析表明, 配合物1和2在室温下具有较强的蓝光发射.     

Synthesis,crystal structures and luminescence properties of europium and terbium picolinamide complexes

The novel coordination structures of europium and terbium chloride-picolinamide complexes （EuCl3-（C6H6N2O）2.5H2O, Eu-pa and TbCl3.（C6H6N2O）2.5H2O, Tb-pa） are reported. The crystal structures in the solid state are characterized by X-ray single crystal diffraction, FTIR, Raman, FIR, THz and luminescence spectroscopy. In the crystal structures, the pyridyl nitrogen and carbonyl oxygen atoms in picolinamide are coordinated to the metal ions to form a five-membered ring structure. The experimental results indicate the similar coordination structures of Eu and Tb-pa complexes and the changes of hydrogen bonds and conformation provide models for the coordination structures of the ligands induced by complexation. The results of lanthanide ions with ligands having amide groups.     

Ab initio calculations of the vibrational spectra of the ammonia and fluoramide complexes with HF

The structures, energetics, vibrational frequencies and IR intensities of the H₃N HF, H₃N F₂ and NH₂FHF (three isomers) complexes were examined using the self-consistent field method within the 6-311G^** basis set. The interaction energies were calculated using the MP2 approach. The results are compared with monomer calculations and experimental data. The complex NH₂FHF was found to exist in three forms: one with the HF molecule hydrogen bonded to the nitrogen lone pair of NH₂F (D₀ =7.403 kcal mol⁻¹), another a complex formed through the F atom lone pair (D₀=4.698 kcal mol⁻¹) and third a cyclic structure (D₀=5.644 kcal mol⁻¹).     

Infrared spectroscopic and photochemical study of water-ozone complexes in solid argon

Infrared spectroscopy has been coupled with the matrix isolation technique, firstly for a study of the molecular complexes between ozone and water, secondly to investigate the mechanism of the water photooxidation by ozone at 15 K by UV light. The 1:1, 1:2 and 2:1 complexes are isolated and mainly characterized by a shift in the infrared absorption of the H₂O (D₂O) submolecule. Force field calculations involving anharmonicity corrections allows us to conclude into the non-equivalence of the two OH oscillators within the 1:1 complex. This result suggests the formation of a very weak hydrogen bond of the type HOH...OO₂. By photolysis of the water-ozone mixture in solid argon (λ < 310 nm), formation of H₂O₂ with very small amounts of O₂H and OH is observed. This process occurs through the reaction between the O(¹D) atom generated by photodissociation of O₃ belonging to the one H₂O: O₃ pair and the water molecule of the same pair, without diffusion of the oxygen atom.     

水助催化氢分子在金纳米粒子上解离的理论研究

金纳米粒子（GNPs）对氢分子（H₂）的解离具有良好的催化活性. 本文研究了水分子对 GNPs 催化 H₂ 解离的影响. 对于H₂在中性和带正电的金簇（Au_n^δ,n=3~5;δ = 0,1）上的反应,考虑当水簇（(H₂O)_m,m = 1, 2, 3, 7）参与反应时 GNPs 催化H₂的解离过程的热力学和动力学. 研究结果表明,水对 H₂ 在GNPs上的解离有助催化的作用,且水簇大小不同,水助催化 H₂ 在金簇上解离的机理也有所不同,其由氢氢键的均裂解离转化为氧化解离. 对两种机理所得的产物,作者计算了它们的 Raman 和 IR 光谱.     

Infrared and ab initio studies of hydrogen bonding and proton transfer in the complexes formed by pyrazoles

The results of experimental studies and quantum mechanical calculations of vibrational spectra and structure of hydrogen bonded complexes formed by pyrazole (P) and 3,5-dimethylpyrazole (DMP) are presented. IR spectra of pyrazoles in solutions, gas phase, and solid state have been investigated in wide range of concentrations and temperatures. It has been found that in the gas phase both P and DMP reveal the equilibrium between monomers, dimers, and trimers. In solutions the equilibrium between monomers and trimers dominates, no bands, which can be attributed to dimers were detected. DMP retains the trimer structure in solid state, while in the case of pyrazole P, formation of the crystal provides another type of association. Geometrical and spectral characteristics of dimers and trimers, obtained by ab initio calculations, are presented and compared with experimental data.

IR spectra of solutions containing P and DMP with a number of acids (acetic and trifluoroacetic acids, pentachlorophenol, HBr) have been studied in parallel with ab initio calculations. It has been found that pentachlorophenol forms with pyrazoles complexes with one strong hydrogen bond O–HN, while NH pyrazole group remains unbonded. With carboxylic acids DMP forms 1:1 cyclic complexes with two hydrogen bonds. In the case of acetic acid, the complex in CH₂Cl₂ solution reveals molecular structure with OHN and C=OHN bonds, in accordance with results of the calculations. For trifluoroacetic acid, the calculations predict the molecular structure to be energetically more stable in the case of the isolated binary complex (in gas phase), while the experimental spectrum of CH₂Cl₂ solution gives an evidence of the proton transfer with formation of the cyclic ionic pair with two NH⁺O⁻ bonds. The agreement with experimental results can be improved by taking into account the influence of environment in the framework of Onsager or Tomasi models. The shape of proton potential function of the complexes and medium effect on its parameters, resulted from experimental data and calculations, are discussed. It has been found that the number of potential minima and their relative depth depend strongly on the method of calculations and the basic set. Under excess of trifluoroacetic acid, the formation of 2:1 acid–DMP complex has been detected. Spectral characteristics and results of calculations point to the cyclic structure of this complex, which includes homoconjugated bis-trifluoroacetate anion and DMPH⁺ cation. With HBr both studied pyrazoles were found to form ionic complexes including one or two pyrazole molecules per one acid molecule and correspondingly monocation or homoconjugated cation BHB⁺.     

DFT studies of the structure, vibrational and NMR spectra of 2-amino-pyridine betaine monohydrate

Four of the most stable conformers of 2-amino-pyridine betaine (1-carboxymethyl-2-amino-pyridinium inner salt) monohydrates, 2-NH₂PB·H₂O, and one anhydrous were analyzed by the B3LYP/6-31G(d,p) calculations and compared with the X-ray data. Two types of optimized conformers can be distinguished: (a) with NH₂ and COO groups and (b) an imino tautomer with NH and COOH groups. A common feature of the optimized molecules are intramolecular hydrogen bonds between the COO⁻ and H₂N or COOH and HN groups. In the crystal both NH₂ and COO groups participate in intermolecular hydrogen bonds. The probable assignments of the anharmonic experimental solid state vibrational frequencies of 2-NH₂PB·H₂O and 2-ND₂PB·D₂O (conformer 2) based on the calculated B3LYP/6-31G(d,p) harmonic frequencies have been made. Correlations between experimental chemical shifts for 2-NH₂PB, its hydrochloride and 1-carboxyethyl-2-amino-pyridinium inner salt (¹³C and ¹H in D₂O) and GIAO/B3LYP/6-31G(d,p) calculated isotropic shielding constants, δ_exp=a+bσ_calc, are reported. Good linear regression between experimental and theoretical results for ¹³C was obtained. Only in 2-NH₂PB the hydrogen at -position is outside the linear correlation.