Density functional complete study of hydrogen bonding between the water molecule and the hydroxyl radical (H2O · HO)

The hydrogen bonding complexes formed between the H₂O and OH radical have been completely investigated for the first time in this study using density functional theory (DFT). A larger basis set 6‐311++G(2d,2p) has been employed in conjunction with a hybrid density functional method, namely, UB3LYP/6‐311++G(2d,2p). The two degenerate components of the OH radical ²Π ground electronic state give rise to independent states upon interaction with the water molecule, with hydrogen bonding occurring between the oxygen atom of H₂O and the hydrogen atom of the OH radical. Another hydrogen bond occurs between one of the H atoms of H₂O and the O atom of the OH radical. The extensive calculation reveals that there is still more hydrogen bonding form found first in this investigation, in which two or three hydrogen bonds occur at the same time. The optimized geometry parameter and interaction energy for various isomers at the present level of theory was estimated. The infrared (IR) spectrum frequencies, IR intensities, and vibrational frequency shifts are reported. The estimates of the H₂O · OH complex's vibrational modes and predicted IR spectra for these structures are also made. It should be noted that a total of 10 stationary points have been confirmed to be genuine minima and transition states on the potential energy hypersurface of the H₂O · HO system. Among them, four genuine minima were located. © 2002 Wiley Periodicals, Inc. Int J Quantum Chem, 2002     

The Effect of Intramolecular Hydrogen Bond Type on the Gas-Phase Deprotonation of ortho-Substituted Benzenesulfonic Acids. A Density Functional Theory Study

Structural factors have been identified that determine the gas-phase acidity of ortho-substituted benzenesulfonic acid, 2-XC₆H₄–SO₃H, (X = –SO₃H, –COOH, –NO₂, –SO₂F, –C≡N, –NH₂, –CH₃, –OCH₃, –N(CH₃)₂, –OH). The DFT/B3LYP/cc-pVTZ method was used to perform conformational analysis and study the structural features of the molecular and deprotonated forms of these compounds. It has been shown that many of the conformers may contain anintramolecular hydrogen bond (IHB) between the sulfonic group and the substituent, and the sulfonic group can be an IHB donor or an acceptor. The Gibbs energies of gas-phase deprotonation Δ_rG⁰₂₉₈ (kJ mol^–1) were calculated for all compounds. It has been set that in ortho-substituted benzenesulfonic acids, the formation of various types of IHB is possible, having a significant effect on the Δ_rG⁰₂₉₈ values of gas-phase deprotonation. If the –SO₃H group is the IHB donor, then an ion without an IHB is formed upon deprotonation, and the deprotonation energy increases. If this group is an IHB acceptor, then a significant decrease in Δ_rG⁰₂₉₈ of gas-phase deprotonation is observed due to an increase in IHB strength and the A⁻ anion additional stabilization. A proton donor ability comparative characteristic of the –SO₃H group in the studied ortho-substituted benzenesulfonic acids is given, and the Δ_rG⁰₂₉₈ energies are compared with the corresponding values of ortho-substituted benzoic acids.     

Quantum-chemical investigation of the silicon and carbon coordination bond in their isostructural compounds

Ab initio calculations within the minimal basis set of STO -4LGTO have been carried out on molecules of type H₃MX (M = Si, C; X = H, NH₂, OH, F). The influence of the MH₃-group inversion on the electronic structure of these compounds has been investigated and illustrated by MO electron density maps. The ability of the central atom to form an additional bond has been estimated with the help of calculations on the complexes of these molecules with the hydrogen negative ion. The complexes of type [H₄SiX]^? have been found to be more stable than their unbonded components. The [H₄CX]^? complex formation has not proved to be advantageous.     

Organo group VB chemistry: Part VII. On the electric dipole moments of some substituted triarylphosphine derivatives R3PY,with Y = free electron pair,O and S

The dipole moments of a series of quadruply-coordinated phosphorus derivatives of the general formula R₃PY where R = C₆H₅, 4-XC₆H₄, 3-XC₆H₄ (X = F, Cl) and Y = O, S, are reported. This consistent set of data is used to discuss the suitable values for the whole of group moments μ(C₆H₅-P), bond moments μ(X-C₆H₅), coordination bond moments μ(P → Y), valence angle β and conformation angles Φ.     

Preparation and X-Ray Study of Inclusion Complexes of (4Z,5E)-Pyrimidine-2,4,5,6(1 H,3H)-Tetraone 4,5-Dioxime and the Product of Its Cyclization, (1,2,5)-Oxadiazolo(3,4-d)-Pyrimidine-5,7(4 H,6H)-Dione with Two 18-Membered Macrocycles

The novel dioxime, (4Z,5E)-pyrimidine-2,4,5,6(1H,3H)-tetraone 4,5-dioxime (H₂-PTD) was obtained by the interaction of 6-amino-5-nitrosopyrimidine-2,4(1H,3H)-dione with hydroxylamine hydrochloride. X-ray structural analysis determined the 4Z,5E-configuration of the corresponding monoanion, pyrimidine-2,6(1H,3H)-dione-4-iminole-5-iminolate in the inclusion complexes with diazonia-18-crown-6 (1,4,10,13-tetraoxa-7,16-diazoniacyclooctadecane) (H₂-DA18C6)²⁺ (complex (1), stoichiometry 2 : 1), and its ammonium salt in the complex with the cis-syn-cis isomer of dicyclohexano-18-crown-6(DCHA) (cis-syn-cis-2,5,8,15,18,21-hexaoxatricyclo (20.4.0.0^9,14)hexacosane) (complex (2), stoichiometry 1 : 1). X-ray data were also obtained for the complex of the product of (H₂-PTD) cyclization, (1,2,5)-oxadiazolo(3,4-d)pyrimidine-5,7(4H,6H)-dione (OPD) with diaqua diaza-18-crown-6 (complex (3), stoichiometry 2 : 2 : 1).In (1) the (H-PTD)^- anions are joined into dimers through the bifurcated OH...N and OH...O hydrogen bonds and alternate with diazonia-18-crown-6 cations in the chains sustained by the NH(crown) ... O and NH(crown) ...N interactions. The chains are further combined into the 3D network via NH...O(crown) hydrogen bonds. In (2) the self-complementarity of the (H-PTD)^- anions facilitates their assembly into the chain via OH...N, NH...O and OH...O interactions. The ammonium cations bridge each anion and the DCHA macrocycle with the formation of a ribbon developed along the [101] direction in the unit cell. Ternary complex (3) is built of the neutral species, diaza-18-crown-6, water molecules and dimers of OPD alternated in the chains and held together by OH...O and NH...O hydrogen bonds.     

Synthesen nitro-substituierter cis-bis(phenyl)platin(II)-verbindungen

Syntheses of the compounds [Pt(η⁴-COD)(4-XC₆H₄)(4-O₂NC₆H₄)] (X = (CH₃₂N, CH₃O, CH₃, NO₂; COD = 1,5-cyclooctadiene) and cis-{Pt[P(C₆H₅₃]₂- (4-O₂NC₆H₄(4-XC₆H₄)} (X = CF₃, NO₂) are reported. Experiments to synthesize cis-{Pt[P(C₆H₅)₃]₂(4-O₂NC₆H₄(4-XC₆H₄} (X = (CH₃₂N, CH₃O, CH₃) with an electron donor in one and an electron acceptor in the second platinum-bonded phenyl ring resulted in the spontaneous reductive elimination of 4-O₂NC₆H₄C₆-H₄X-(4). This observation supports the hypothesis of a donor-acceptor interaction in the transition state of the reductive biphenyl elimination.     

The oxygen Kα x-ray emission spectra of fluorinated anisoles and pentafluorophenol

Oxygen and fluorine K_α X-ray emission spectra have been obtained for a number of oxygen-containing compounds: H₂O, CH₃OH, C₆H₅OH, C₆H₅OCH₃, C₆F₅OH and 4-XC₆F₄OCH₃ (X = F, OCH₃, CF₃) in the solid or gaseous states and interpreted on the basis of the UV photoelectron and ESCA data and the results of MINDO/3 calculations. The mixing of the oxygen 2pAO with the highest occupied π-orbitals of the benzene ring is concluded to be small. The main contribution of the 2p(O)AO is shown to be to the system of σ-levels and lower-lying π-levels. CH₃OH is assumed to have hyperconjugation. Comparison of the electronic structures of oxygen in phenol and anisole with those in their polyfluorinated analogues shows the reduced effectiveness of oxygen 2pAO conjugation with the π-system of the benzene ring in the latter cases.     

Theoretical study of the effects of substitution,solvation, and structure on the interaction between nitriles and methanol

We report an investigation on intermolecular interactions in R? CN ··· H? OCH₃ (R = H, CH₃, F, Cl, NO₂, OH, SH, SCH₃, CHO, COCH₃, CH₂Cl, CH₂F, CH₂OH, CH₂COOH, CF₃, SCOCH₃, SCF₃, OCHF₂, CH₂CF₃, CH₂OCH₃, and CH₂CH₂OH) complexes using density functional theory. The calculations were conducted on B3LYP/6‐311++G** level of theory for optimization of geometries of complexes and monomers. An improper hydrogen bonding (HB) in the H₃CO? H ··· NC? R complexes was observed in that N atom of the nitriles functions acts as a proton acceptor. Furthermore, quantum theory of “Atoms in Molecules” (AIM) and natural bond orbital (NBO) method were applied to analyze H‐bond interactions in respective complexes. The electron density (ρ) and Laplacian (?²ρ) properties, estimated by atoms in molecules calculations, indicate that H ··· N bond possesses low ρ and positive ?²ρ values, which are in agreement with partially covalent character of the HBs, whereas O? H bonds have negative ?²ρ values. In addition, the weak intermolecular force due to dipole–dipole interaction (U) is also considered for analysis. The examination of HB in these complexes by quantum theory of NBO method fairly supports the ab initio results. Natural population analysis data, the electron density, and Laplacian properties, as well as, the ν(O? H) and γ(O? H) frequencies of complexes, calculated at the B3LYP/6‐311++G** level of theory, are used to evaluate the HB interactions. The calculated geometrical parameters and conformational analysis in water phase solution show that the H₃CO? H ··· NC? R complexes in water are more stable than that in gas phase. The obtained results demonstrated a strong influence of the R substituent on the properties of complexes. Numerous correlations between topological, geometrical, thermodynamic properties, and energetic parameters were also found. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2012     

A DFT study of proton transfers for the reaction of phenol and hydroxyl radical leading to dihydroxybenzene and H2O in the water cluster

Reactions of phenol and hydroxyl radical were studied under the aqueous environment to investigate the antioxidant characters of phenolic compounds. M06‐2X/6‐311 + G(d,p) calculations were carried out, where proton transfers via water molecules were examined carefully. Stepwise paths from phenol + OH^• + (H₂O)_n (n = 3, 7, and 12) to the phenoxyl radical (Ph O^•) via dihydroxycyclohexadienyl radicals (ipso, ortho, meta, and para OH‐adducts) were obtained. In those paths, the water dimer was computed to participate in the bond interchange along hydrogen bonds. The concerted path corresponding to the hydrogen atom transfer (HAT, apparently Ph OH + OH^• → Ph O^• + H₂O) was found. In the path, the hydroxyl radical located on the ipso carbon undergoes the charge transfer to prompt the proton (not hydrogen) transfer. While the present new mechanism is similar to the sequential proton loss electron transfer (SPLET) one, the former is of the concerted character. Tautomerization reactions of ortho or para (OH)C₆H₅=O + (H₂O)_n → C₆H₄(OH)₂(H₂O)_n were traced with n = 2, 3, 4, and 14. The n = 3 (and n = 14) model of ortho and para was calculated to be most likely by the strain‐less hydrogen‐bond circuit.     

Structure and stability of closo-hexaboranes and their heteroanalogs

The molecular and electronic structures of closo-hexaboranes B₆H₆ ^2–, B₆H₇ ^–, and B₆H₈ and closo-heterohexaboranes XYB₄H₄ (X = Y = CH, N; X = BH, Y = CH^–, N^–, NH, O) were studed by the ab initio (MP2(full)/6-311+G**) and density functional (B3LYP/6-311+G**) methods. The bridging H atoms in closo-hexaboranes B₆H₇ ^– and B₆H₈ can undergo facile low-barrier migrations around the boron cage (the barrier heights are about 10—15 kcal mol^–1). All heteroboranes having octahedron-like structures with hypercoordinated N and O atoms are rather stable and can be the subject of synthetic research efforts.     

The role played by the amino and carboxyl groups in the formation of the geometric and electronic structure of phenoxy substituted cyclophosphazenes

A quantum-topological analysis of the electron density calculated by the density functional theory method in the B3LYP/6-31G(d,p) approximation was performed to determine and quantitatively characterize four types of noncovalent interactions in mono-and disubstituted 4-aminophenoxy-and 4-carboxyphenoxycyclotriphosphazenes P₃N₃Cl₅OC₆H₄NH₂, P₃N₃Cl₄(OC₆H₄NH₂)₂, P₃N₃Cl₅OC₆H₄COOH, and P₃N₃Cl₄(OC₆H₄COOH)₂. These are C-H…N hydrogen bonds between a nitrogen atom of the phosphazene ring and a hydrogen atom of the benzene ring, C-H…C interactions between a carbon atom of one phenoxy group and a hydrogen atom of the other such group (C-H…π interactions), N-H…N interactions between nitrogen and hydrogen atoms of neighboring amino groups, and C-O…C interactions between oxygen atoms of neighboring carboxyl groups. This system of noncovalent bonding interactions determines the mutual orientation of oxyphenyl fragments. The total energy of interatomic contacts estimated from the local potential energy of electrons at the corresponding critical bond points is larger for the amino than for the carboxyl group. It follows that the amino group has the strongest effect on the mutual orientation of oxyphenyl fragments. The effect of the carboxyl group is weaker.     

A theoretical study of the condensation reactions of methyl cation with ammonia,water, hydrogen fluoride and hydrogen sulphide

Ab initio molecular orbital calculations have been used to study the condensation reactions of CH₃^? with NH₃, H₂O, HF and H₂S. Geometry optimization has been carried out at the Hartree—Fock (HF) level with the split-valence plus d-polarization 6-31G* basis set and improved relative energies obtained from calculations which employ the split-valence plus dp-polarization 6-31G** basis set with electron correlation incorporated via Moller—Plesset perturbation theory terminated at third order (MP3). Zero-point vibrational energies have also been determined and taken into account in deriving relative energies. The structures of the intermediates CH₃XH^? (X = NH₂, OH, F and SH) have been obtained and dissociation of these intermediates into CH₂X⁺ + H₂ on the one hand, and CH₃^? + HX on the other, has been examined. It is found that for those species for which the methyl condensation reaction is observed to have an appreciable rate (X = NH₂ and SH), the transition structure for hydrogen elimination from CH₃XH^? lies significantly lower in energy than the reactants CH₃^? + HX (by 75 and 70 kJ mol^?1 respectively). On the other hand, for those species for which the methyl condensation reaction is not observed (X = OH and F), the transition structure for H₂ elimination lies higher in energy than CH₃^? + HX (by 6 and 87 kJ mol^?1 respectively).     

Supramolecular interactions in salts/cocrystals involving pyrimidine derivatives of sulfonate/carboxylic acid

The crystal structures of three compounds involving aminopyrimidine derivatives are reported, namely, 5-fluorocytosinium sulfanilate–5-fluorocytosine–4-azaniumylbenzene-1-sulfonate (1/1/1), C₄H₅FN₃O⁺·C₆H₆NO₃S⁻·C₄H₄FN₃O·C₆H₇NO₃S, I , 5-fluorocytosine–indole-3-propionic acid (1/1), C₄H₄FN₃O·C₁₁H₁₁NO₂, II , and 2,4,6-triaminopyrimidinium 3-nitrobenzoate, C₄H₈N₅⁺·C₇H₄NO₄⁻, III , which have been synthesized and characterized by single-crystal X-ray diffraction. In I , there are two 5-fluorocytosine (5FC) molecules (5FC-A and 5FC-B) in the asymmetric unit, with one of the protons disordered between them. 5FC-A and 5FC-B are linked by triple hydrogen bonds, generating two fused rings [two R₂²(8) ring motifs]. The 5FC-A molecules form a self-complementary base pair [R₂²(8) ring motif] via a pair of N—H…O hydrogen bonds and the 5FC-B molecules form a similar complementary base pair [R₂²(8) ring motif]. The combination of these two types of pairing generates a supramolecular ribbon. The 5FC molecules are further hydrogen bonded to the sulfanilate anions and sulfanilic acid molecules via N—H…O hydrogen bonds, generating R₄⁴(22) and R⁶₆(36) ring motifs. In cocrystal II , two types of base pairs (homosynthons) are observed via a pair of N—H…O/N—H…N hydrogen bonds, generating R₂²(8) ring motifs. The first type of base pair is formed by the interaction of an N—H group and the carbonyl O atom of 5FC molecules through a couple of N—H…O hydrogen bonds. Another type of base pair is formed via the amino group and a pyrimidine ring N atom of the 5FC molecules through a pair of N—H…N hydrogen bonds. The base pairs (via N—H…N hydrogen bonds) are further bridged by the carboxyl OH group of indole-3-propionic acid and the O atom of 5FC through O—H…O hydrogen bonds on either side of the R₂²(8) motif. This leads to a DDAA array. In salt III , one of the N atoms of the pyrimidine ring is protonated and interacts with the carboxylate group of the anion through N—H…O hydrogen bonds, leading to the primary ring motif R₂²(8). Furthermore, the 2,4,6-triaminopyrimidinium (TAP) cations form base pairs [R₂²(8) homosynthon] via N—H…N hydrogen bonds. A carboxylate O atom of the 3-nitrobenzoate anion bridges two of the amino groups on either side of the paired TAP cations to form another ring [R₃²(8)]. This leads to the generation of a quadruple DADA array. The crystal structures are further stabilized by π–π stacking ( I and III ), C—H…π ( I and II ), C—F…π ( I ) and C—O…π ( II ) interactions.     

Comparison of the hydrogen‐bond patterns in 2‐amino‐1,3,4‐thiadiazolium hydrogen oxalate, 2‐amino‐1,3,4‐thiadiazole–succinic acid (1/2), 2‐amino‐1,3,4‐thiadiazole–glutaric acid (1/1) and 2‐amino‐1,3,4‐thiadiazole–adipic acid (1/1)

The X‐ray single‐crystal structure determinations of the chemically related compounds 2‐amino‐1,3,4‐thiadiazolium hydrogen oxalate, C₂H₄N₃S⁺·C₂HO₄⁻, (I), 2‐amino‐1,3,4‐thiadiazole–succinic acid (1/2), C₂H₃N₃S·2C₄H₆O₄, (II), 2‐amino‐1,3,4‐thiadiazole–glutaric acid (1/1), C₂H₃N₃S·C₅H₈O₄, (III), and 2‐amino‐1,3,4‐thiadiazole–adipic acid (1/1), C₂H₃N₃S·C₆H₁₀O₄, (IV), are reported and their hydrogen‐bonding patterns are compared. The hydrogen bonds are of the types N—H...O or O—H...N and are of moderate strength. In some cases, weak C—H...O interactions are also present. Compound (II) differs from the others not only in the molar ratio of base and acid (1:2), but also in its hydrogen‐bonding pattern, which is based on chain motifs. In (I), (III) and (IV), the most prominent feature is the presence of an R₂²(8) graph‐set motif formed by N—H...O and O—H...N hydrogen bonds, which are present in all structures except for (I), where only a pair of N—H...O hydrogen bonds is present, in agreement with the greater acidity of oxalic acid. There are nonbonding S...O interactions present in all four structures. The difference electron‐density maps show a lack of electron density about the S atom along the S...O vector. In all four structures, the carboxylic acid H atoms are present in a rare configuration with a C—C—O—H torsion angle of ∼0°. In the structures of (II)–(IV), the C—C—O—H torsion angle of the second carboxylic acid group has the more common value of ∼|180|°. The dicarboxylic acid molecules are situated on crystallographic inversion centres in (II). The Raman and IR spectra of the title compounds are presented and analysed.     

Mass spectra of sulfinamide derivatives and identification of their thermal decomposition products

The mass spectra of 30 sulfinamide derivatives (RSONHR', R' alkyl or p-XC₆H₄) are reported. Most of the spectra had peaks attributable to thermal decomposition products. For some compounds these were identified by pyrolysis under similar conditions to be: RSO₂NHR', RSO₂SR, RSSR and NH₂R' (in all kinds of sulfinyl amides); RSNHR' (in the case of arylsulfinyl arylamides); RSO₂C₆H₄NH₂, RSOC₆H₄NH₂ and RSC₆H₄NH₂ (in the case of arylsulfinyl arylamides of the type of X = H) The mass spectra of the three thermally stable compounds showed that there are several kinds of common fragment ions. The mass spectra of the thermally labile compounds had two groups of ions; (i) characteristic fragment ions of the intact molecules and (ii) the molecular ions of the thermal decomposition products. It was concluded that the sulfinamides give the following ions after electron impact: [M]⁺, [M ? R]⁺, [M ? R + H]⁺, [M ? SO]⁺, [RS]⁺, [NHR']⁺, [NHR' + H]⁺, [RSO]⁺, [RSO + H]⁺, [R]⁺, [R + H]⁺, [R']⁺ and [M ? OH]⁺, and that the thermal decomposition products give the following ions: [RSO₂SR]⁺, [RSSR]⁺, [M ? O]⁺, [M + O]⁺ and [RSOC₆H₄NH₂]⁺.     

Metallobiliverdin Radicals—DFT Studies

Several aspects of the molecular and electronic structure of biliverdin derivatives have been studied using density functional theory (DFT). The calculations have been performed for complexes of trianion (BvO₂)^3? and dianion [BvO(OH)]^2?, derived from two tautomeric forms of biliverdin, BvO₂H₃ and [BvO(OH)]H₂, with redox innocent metal ions: lithium(I ), zinc(II ), and gallium(III ). One‐electron‐oxidized and ‐reduced forms of each complex (cation and anion radicals) have been also considered. The molecular structures of all species investigated are characterized by a helical arrangement of tetrapyrrolic ligands with the metal ion lying in the plane formed by the two central pyrrole rings. The spin density distribution in four types of metallobiliverdin radicals—[(BvO₂^.)Mⁿ⁺]^n‐2, [{BvO(OH)^.}Mⁿ⁺]^n‐1 (cation radicals), [(BvO2^.)Mⁿ⁺]^n‐4, [{BvO(OH)^.}Mⁿ⁺]^n‐3 (anion radicals)—has been investigated. In general, the absolute values of spin density on meso carbon atoms were larger than for the β‐carbon atoms. Sign alteration of spin density has been found for meso positions, and also for the β‐carbon atoms of at least two pyrrole rings. The calculated spin density maps accounted for the essential NMR spectroscopic features of iron biliverdin derivatives, including the considerable isotropic shifts detected for the meso resonances and shift alteration at the meso and β‐positions.     

Lattice Effects on the Spin‐Crossover Profile of a Mononuclear Manganese(III) Cation

Six solvated salts of a mononuclear manganese(III) complex with a chelating hexadentate Schiff base ligand are reported. One member of the series, [MnL]PF₆^.0.5 CH₃OH ( 1 ), shows a rare low‐spin (LS) electronic configuration between 10–300 K. The remaining five salts, [MnL]NO₃? C₂H₅OH ( 2 ), [MnL]BF₄?C₂H₅OH ( 3 ), [MnL]CF₃SO₃?C₂H₅OH ( 4 ), [MnL]ClO₄?C₂H₅OH ( 5 ) and [MnL]ClO₄?0.5 CH₃CN ( 6 ), all show gradual incomplete spin‐crossover (SCO) behaviour. The structures of all were determined at 100 K, and also at 293 K in the case of 3 – 6 . The LS salt [MnL]PF₆^.0.5 CH₃OH is the only member of the series that does not exhibit strong hydrogen bonding. At 100 K two of the four SCO complexes ( 2 and 4 ) assemble into 1D hydrogen‐bonded chains, which weaken or rupture on warming. The remaining SCO complexes 3 , 5 and 6 do not form 1D hydrogen‐bonded chains, but instead exhibit discrete hydrogen bonding between cation/counterion, cation/solvent or counterion/solvent and show no significant change on warming.     

In cation interactions with some organics: ab initio molecular orbital and density functional theory

Ab initio molecular orbital and density functional theory studies were undertaken to investigate the structural and energetic characteristics of complexes of In⁺ with several different organic molecules for the first time. HF, MP2, QCISD, and CCD levels of theory in ab initio MO as well as B3LYP, B3PW91 hybrid functionals in density functional theory were used. A valence TZ+P basis set with relativistic effective core potentials was used for the In atom while the 6-311++G(3d, 2p) basis set was utilized for all other atoms. Both closed-shell (H₂O, CH₄, CH₃OH, and C₆H₆) and open-shell (CH₃ and C₂H₃) molecules were considered for complexation with In⁺. In⁺ affinities of 21.5, 24.8, 28.6, 18.4, and 23.0 kcal/mol were obtained with the B3PW91 hybrid functional for H₂O, CH₃OH, C₆H₆, CH₃, and C₂H₃, respectively. The large values for the calculated affinities indicate the validity of our recent experimental detection of In⁺ ion attachment to some organic molecules.     

Oxidative addition of dihydrogen as the key step of the active center formation in the HDS sulfide bimetallic catalysts: ab initio MO/MP2 study

The electronic structure of Ni in the sulfide bimetallic species (SBMS), which is the active component of the sulfide HDS catalysts, is studied with the ab initio molecular orbital calculations. In the previous paper [I.I. Zakharov, A.N. Startsev, G.M. Zhidomirov, J. Mol. Catal. 119 (1997) 437], we have shown that the d⁸ Ni(II) electronic state in the SBMS composition cannot be active in HDS reaction because of the lack of possibility to coordinate S-containing molecule. Therefore, this paper deals with the study of the possibility to stabilize d⁶ electron configuration with the formal Ni(IV) oxidation state. With this in mind, the reaction of oxidative addition of dihydrogen to square–planar complex Ni(II)Cl₂(PH₃)₂ has been studied, which allowed to predict a stabilization of the octahedral complex Ni(IV)H₂Cl₂(PH₃)₂ with d⁶ configuration. This allows us to assume a possibility of an oxidative adsorption of dihydrogen to the Ni atom entering the SBMS composition. Ab initio calculations have shown that such type of oxidative addition is thermodynamically favorable resulting in stabilization of the Ni(IV) d⁶ electronic state. Consequently, the dihydrogen molecule is assumed to dissociate on the Ni atom resulting in the formation of `surface' H<sub>s</sub> and `occluded' H_o hydrogen, which is located under the Ni atom in the center of the trigonal sulfur prism. The structure of the active centers is optimized and the stretching modes of the hydrogen atoms are calculated, which appear to be close to the literature data. The H₂S adsorption on the active center was also investigated and it was shown that the hydrogen disulfide molecule benefits to stabilization of the active Ni(IV) d⁶ state. The conclusion is drawn that the deciding factor in the formation of the active centers of sulfide HDS catalysts is the `occluded' hydrogen.     

Semiempirical estimates of the correlation energy in small clusters of hydrogen atoms

The Pamuk EPCE-F2σ method is applied to neutral and charged clusters composed from 2–9 hydrogen atoms. The range of applicability of the method is demonstrated with H₂, H ₃ ⁺ , and H₃ by comparing the results with the reported rigorous SCF and CI calculations. Predictions of the correlation energy were made for larger hydrogen atom systems, the emphasis being laid in the discussion on H₄, H ₅ ⁺ , and H₆.