贝诺酯与牛血清白蛋白位点选择性结合的分子光谱研究

采用荧光光谱、紫外可见光谱、同步荧光光谱及三维荧光光谱等分子光谱方法,研究了生理条件下贝诺酯(BEN)与牛血清白蛋白(BSA)的相互作用。结果表明,BEN对BSA的内源荧光有显著的猝灭作用,猝灭机理为动态猝灭,二者之间的作用力类型以疏水作用为主,BEN与BSA发生反应后,使BSA的疏水环境极性增强,疏水性减弱,荧光强度降低。测得的表观结合常数和结合位点数分别是1 050 L·mol^-1和0.88,同时测得了焓变(ΔH)、熵变(ΔS)和自由能变(ΔG)等热力学参数。同步荧光和三维荧光光谱的结果表明,BEN使BSA的构象发生改变。利用荧光特异性位点探针DA和DP,通过竞争结合实验,监测BEN与BSA的结合位点,测得了位点Ⅰ和位点Ⅱ的表观结合常数分别为4 300 L·mol^-1和21 200 L·mol^-1,表明BEN与BSA优先在位点Ⅱ结合。     

抑制剂Benzamidine与胰岛素作用机制的分子动力学和结合自由能计算研究

氢键和极性相互作用在抑制剂-蛋白结合专一性识别过程中起到重要作用.抑制剂Benzamidine(BEN)与胰岛素trypsin相互作用机制的阐明有助于胰岛素高效抑制剂的研发.本文采用分子动力学模拟和MM-PBSA(molecular mechanics-Poisson Boltzmann surface area)从原子层次上研究BEN与胰岛素的结合模式.结果表明抑制剂BEN的脒基不仅与Asp189的羰基产生静电相互作用,而且与残基Ser190和Gly214形成氢键相互作用.基于残基能量分解的计算表明抑制剂的苯基与残基His58,Cys191,Gln192,Trp211,Gly212和Cys215形成有利于抑制剂结合的疏水性相互作用.期望当前的研究能为胰岛素有效抑制剂的研发提供重要的理论指导.     

抑制剂Benzamidine与胰岛素作用机制的分子动力学和结合自由能计算研究

氢键和极性相互作用在抑制剂-蛋白结合专一性识别过程中起到重要作用. 抑制剂Benzamidine(BEN)与胰岛素trypsin相互作用机制的阐明有助于胰岛素高效抑制剂的研发.本文采用分子动力学模拟和MM-PBSA(molecular mechanics-Poisson Boltzmann surface area)从原子层次上研究BEN与胰岛素的结合模式.结果表明抑制剂BEN的脒基不仅与Asp189的羰基产生静电相互作用，而且与残基Ser190和Gly214形成氢键相互作用.基于残基能量分解的计算表明抑制剂的苯基与残基His58, Cys191, Gln192, Trp211, Gly212和Cys215形成有利于抑制剂结合的疏水性相互作用.期望当前的研究能为胰岛素有效抑制剂的研发提供重要的理论指导.     

Investigation of the Interaction Between Rutin and Trypsin in Solution by Multi-Spectroscopic Method

ABSTRACT

The interactions between rutin and trypsin were investigated by UV-Vis absorption, CD, fluorescence, resonance light-scattering spectra, synchronous fluorescence, and three-dimensional fluorescence spectra techniques under physiological pH 7.40. Rutin effectively quenched the intrinsic fluorescence of trypsin via static quenching. The enthalpy change and entropy change were estimated to be ?8.23 kJ·mol^?1 and 53.66 J·mol^?1·K^?1 according to the van't Hoff equation. The process of binding rutin to trypsin was a spontaneous molecular interaction procedure. This result indicates that hydrophobic and electrostatic interactions played a major role in stabilizing the complex. The conformation of trypsin was discussed by CD, synchronous, and three-dimensional fluorescence techniques.     

Luminescence quenching effect for the interaction of prulifloxacin with trypsin-Britton-Robinson buffer solution system

Prulifloxacin is a kind of new oral taking antibiotic of fluoroquinolone. Conjugation reaction of prulifloxacin with trypsin in Britton-Robinson buffer solution of pH 7.96 was analyzed by UV-vis spectrophotometry and fluorescence spectrometry. The intrinsic fluorescence of trypsin was strongly quenched by prulifloxacin. This effect was rationalized in terms of a static quenching procedure. The binding parameters have been evaluated by fluorescence quenching methods. Negative values ΔG⁰ for the formation of prulifloxacin-trypsin complex implied that both hydrogen bonds and hydrophobic interactions might play a significant role in prulifloxacin binding to trypsin. The binding distance deduced from the efficiency of energy transfer was 0.84 nm for prulifloxacin-trypsin. Furthermore, association constants and binding mechanism were successfully derived from the fluorescence spectra. UV-vis detections supported a change in the secondary structure of proteins caused by the interaction of prulifloxacin with trypsin.     

Studies on the Interactions of 2, 4-Dinitrophenol and 2, 4-Dichlorphenol with Trypsin

The interactions of 2, 4-dinitrophenol and 2, 4-dichlorphenol with trypsin were investigated by fluorescence, synchronous fluorescence, and three-dimensional fluorescence spectra techniques under physiological pH 7.40. The 2, 4-dinitrophenol and 2, 4-dichlorphenol effectively quenched the intrinsic fluorescence of trypsin via static quenching. The process of binding 2, 4-dinitrophenol and 2, 4-dichlorphenol with trypsin was a spontaneous molecular interaction procedure. The electrostatic repulsion does favor the interaction between 2, 4-DNP and trypsin. However, the interaction of 2, 4-DCP and trypsin can be explained on the basis of hydrogen bonding and van der Waals. The results of synchronous fluorescence spectroscopy and three-dimensional fluorescence spectra indicated that the structure of these trytophan and tyrosine residues environments were altered by 2, 4-DNP and 2, 4-DCP.     

光谱法和分子对接模拟技术研究托拉塞米与胃蛋白酶和胰蛋白酶的相互作用

托拉塞米(TOR)属于吡啶磺酰脲类袢利尿剂,被广泛有效地用于高血压,心脏衰竭,慢性肾功能衰竭和肝脏疾病的治疗。TOR在治疗过程中易引起的不良反应之一为轻微肠胃不适。然而,TOR与消化蛋白酶(胰蛋白酶和胃蛋白酶)分子间的相互作用鲜有报道。在模拟生理条件下,采用荧光光谱、紫外-可见吸收光谱、圆二色谱和分子对接技术研究了不同温度下托拉塞米(Torasemide, TOR)与胃蛋白酶(Pepsin)和胰蛋白酶(Trypsin)间的相互作用。所有荧光数据均进行了内滤光校正以获得更准确的结合参数。结果表明,TOR-Pepsin和TOR-Trypsin体系的猝灭常数(K_SV)均与温度呈负相关,说明TOR与Pepsin及Trypsin之间的作用机制均为静态荧光猝灭。利用紫外-可见吸收光谱、同步荧光光谱、3D荧光光谱和圆二色光谱法考查了TOR对Trypsin和Pepsin构象的影响。结果发现胃蛋白酶或胰蛋白酶中酪氨酸残基的极性改变较色氨基更明显,TOR可改变色氨酸残基的微环境并降低Trypsin和Pepsin中β-折叠结构,进而可能影响其生理功能。分子对接结果表明,TOR与Pepsin的结合位点位于由Asp-32和Asp-215组成的活性中心周围,从而抑制Pepsin活性。而TOR通过疏水作用力结合在Trypsin的口袋型底物结合位点(S1口袋),促进底物进入酶活性中心,最终表现为Trypsin活性升高。该研究探讨了TOR与胃蛋白酶和胰蛋白酶的结合作用和毒性机制,为TOR的安全使用提供重要依据。     

Fluorescence Interaction and Determination of Sulfathiazole with Trypsin

The mechanism of interaction of trypsin with the sulfathiazole was studied through using fluorescence quenching and UV-visible absorption spectra at pH 7.4. The Stern-Volmer quenching constants, binding constants, number of binding sites and the corresponding thermodynamic parameters ΔH^o, ΔS^o and ΔG^o were calculated at different temperatures. The effect of common metal ions on the constants was also discussed. The results suggest that sulfathiazole can interact strongly trypsin and that there is the formation of trypsin-sulfathiazole complex and the interaction can be explained on the basis of hydrogen bonds and van der Waals forces. The binding distance (r) between the donor (trypsin) and acceptor (sulfathiazole) was 3.52 nm based on the Förster’s non-radiative energy transfer theory. The detection and quantification limits of sulfathiazole were calculated as 2.52 and 8.40 μM in the presence of trypsin, respectively. The relative standard deviation (RSD) was 4.086 % for determinations (n?=?7) of a sulfathiazole solution with the concentration of 7.54 μM.     

Potential influence on drug efficacy from interaction of tartrazine and trypsin

The extent to which drugs combine with trypsin is influenced by the interaction of tartrazine and trypsin, which may cause overdose or underdose of drugs. Therefore, the interaction of tartrazine and trypsin is investigated by methods of spectrometry in this paper. The binding rate of tartrazine to trypsin is 80.95–95.71% at 310?K, and Hill’s coefficients are almost 1. The effect of tartrazine on trypsin structure was studied by synchronous and circular dichroism. The results showed that the binding of tartrazine and trypsin induced the conformational change of trypsin, and quenched the endogenous fluorescence in trypsin. The results of molecular docking revealed that tartrazine is located in the catalytic active site of trypsin, and is consistent with that of experimental calculation.     

Spectroscopic study and application of the interaction mechanism of meloxicam with trypsin

Abstract

In order to explore the interaction between meloxicam and trypsin, the interaction mechanism between meloxicam and trypsin was studied by fluorescence spectrum, UV-vis absorption spectrum, circular dichroism spectrum, and molecular docking simulation under the experimental condition of pH = 7.40. The results of spectral experiments showed that meloxicam could effectively quench the internal fluorescence of trypsin in the form of static quenching, formed a stable complex at 1:1, and changed the conformation of trypsin. The results of thermodynamic constant showed that ΔG?H?S?>?0 indicates that the main force type of the binding system was hydrophobic interaction and hydrogen bonding. Molecular docking technique showed that the best binding site between meloxicam and trypsin was near the catalytic active center of trypsin, and the interaction between them changed the microenvironment of amino acid residues in the catalytic active center of trypsin. The mathematical model of drug and protein showed that when the concentration ratio of meloxicam to trypsin was 1:1, the protein binding rate of the binding system was 5.15%. The concentration ratio of meloxicam to trypsin was 30: 1, and the protein binding rate was 45.4%. The results showed that when the drug concentration was high, the binding effect of the system had a great influence on the concentration of free trypsin.     

光谱法结合分子对接模拟技术研究头孢他啶与胰蛋白酶的相互作用机理

本文主要通过荧光光谱法与分子对接技术研究了在298,303,310 K温度下头孢他啶(CFD)与胰蛋白酶(TRP)之间的作用机制。研究结果表明,CFD与TRP之间是通过1∶1的静态猝灭方式相互作用。依照双对数方程处理荧光猝灭数据得到了CFD与TRP作用的结合常数Ka和结合位点数n。通过热力学方程求得了不同温度下CFD与TRP作用的热力学参数。实验数据表明,它们之间的作用力主要是疏水作用和氢键作用,这与分子对接技术所得的结果是一致的。     

吲哚美辛与牛血清白蛋白结合作用的研究

应用紫外光谱和荧光光谱研究了生理条件下吲哚美辛与牛血清白蛋白的相互作用机理,确定静态猝灭和非辐射能量转移是导致吲哚美辛对BSA荧光猝灭的两大原因。利用荧光猝灭反应求得药物与牛血清白蛋白之间的结合常数和结合位点数,根据热力学参数确定它们之间的作用力类型,依据能量转移理论计算二者相互结合时给体-受体间的距离和能量转移效率,结合紫外吸收光谱和荧光光谱结果, 探讨了吲哚美辛与牛血清白蛋白的相互作用模式。     

叠氮化钠对辣根过氧化物酶的荧光猝灭机制的研究

研究了辣根过氧化物酶 (HRP)和叠氮化钠 (NaN3 )作用前后的荧光光谱变化。探讨了HRP的荧光猝灭机制 ,首次运用了HRP的荧光猝灭行为确认了HRP和NaN3 之间生成了配合物。计算了HRP和NaN3 之间生成的配合物的形成常数为 7 9× 10 8L·mol-1,结合位点数为 1。研究还发现 ,NaN3 与HRP的结合 ,影响了分子构象 ,使酪氨酸和色氨酸残基的微环境受到不同程度的影响。     

荧光光谱法研究乙酰水杨酸和牛血清蛋白的相互作用

应用荧光光谱法研究了乙酰水杨酸和牛血清蛋白(BSA)分子间的相互作用。研究表明乙酰水杨酸可猝灭BSA的荧光,同时自身的荧光增强并存在一个等发射点,表明两者之间形成稳定的复合物并发生能量转移。乙酰水杨酸和BSA分子间的结合常数为1.35×103,结合数0.87,静电引力是结合反应的主要的作用力。同时观察了乙酰水杨酸的加入对BSA构象的影响。     

Shape-controlled synthesis of protein-conjugated CdS nanocrystals (NCs) and study on the binding of Cd<Superscript>2+</Superscript>/CdS to trypsin

Protein-conjugated CdS nanocrystals (NCs) with different morphology have been synthesized under biomimetic condition using trypsin as capping agent in aqueous medium. The reaction parameters including concentration of trypsin, pH value, reaction time, and temperature have a major influence on the morphology and optical property of CdS NCs. XRD, selected area electron diffraction (SAED), TEM, HRTEM, and EDS characterizations were used to investigate the structure, composition, morphology, and size of as-prepared products. The binding reaction between Cd²⁺/CdS and trypsin was investigated systematically through various spectroscopic methods. UV-vis, FT-IR, photoluminescence (PL) spectra, and conductivity analysis of Cd²⁺-trypsin suggest that Cd²⁺ ions could coordinate with the functional groups of trypsin and induce the formation of unfolding and loosening structure in protein molecules, and the change of protein conformation was also verified by circular dichroism (CD) spectra. This interaction increased local supersaturation of Cd²⁺ ions around the groups of trypsin and reduced the nucleation activation energy of CdS nuclei, which favored heterogeneous nucleation in trypsin matrix and resulted in the formation of inorganic-organic hybrid materials. The functional integrity of the enzyme conjugated to CdS NCs was studied by monitoring the enzymatic activity of CdS-trypsin conjugates. The fluorescence of CdS NCs is dependent strongly on trypsin which passivates the surface of NCs.     

Thermodynamic Studies on the Interaction of Dioxopromethazine to β-Cyclodextrin and Bovine Serum Albumin

The interaction of dioxopromethazine (DOPM) with beta-cyclodextrin (beta-CD) and bovine serum albumin (BSA) were investigated by fluorescence quenching method. It was shown that DOPM has quite a strong ability to quench the fluorescence launching from BSA by reacting with it and forming a certain kind of new compound. The quenching and the energy transfer mechanisms were discussed, respectively. The binding constants and thermodynamic parameters at four different temperatures, the binding locality, and the binding power were obtained. The conformation of BSA was discussed by synchronous and three-dimensional fluorescence techniques. The inclusion reaction between beta-CD and DOPM was explored by both Lineweaver-Burk equation and Benesi-Hildebrand equation. The inclusion constants and the thermodynamic parameters at 297 and 307 K were figured out, respectively. The mechanism of inclusion reaction was speculated and the slow release characteristics of beta-CD to DOPM was attempted to explain at molecule level.     

过硒二苯2,2'-二甲酸与牛血清白蛋白结合反应热力学特征研究

用荧光光谱和紫外．可见吸收光谱法研究了在不同温度下,新合成的过硒二苯2,2’-二甲酸（PSD）对牛血清白蛋白（BSA）作用的荧光猝灭光谱行为。分别用Stem-Volmer方程和Lineweaver-Burk双倒数方程处理试验数据,证实在试验浓度和温度范围内,其荧光猝灭作用更符合静态猝灭作用特征,PSD与BSA可反应并结合形成具有一定结构的复合物,得到了反应的结合常量、结合热力学性质和结合位点等参数;同时探讨了静态猝灭作用的机理和结合力的性质,为了解PSD与BSA的结合方式、在人体内的传输机理和药理作用提供科学依据。     

荧光光谱法研究盐酸胍浓度不同时变性胰蛋白酶的构象变化

蛋白变性过程中间体的存在是蛋白变性及复性动力学研究中不可缺少的证据。以胰蛋白酶为模型蛋白 ,用荧光光谱法系统地研究了在不同浓度变性剂盐酸胍存在时胰蛋白酶构象的变化 ,并与活性数据进行了对比。发现胰蛋白酶荧光光谱发射波长随变性剂盐酸胍浓度增大而逐渐增大 ,并且当盐酸胍浓度达到 2mol·L- 1 时胰蛋白酶的最大发射波长达到最大值 ,其后随盐酸胍浓度的增大最大发射波长反而逐渐减小 ,当盐酸胍浓度大于 3mol·L- 1 呈现不变的趋势。也就是说 ,在低浓度变性剂环境下 ,胰蛋白酶存在着一个与天然态和完全变性态的分子构象都不同的中间体状态 ,这个中间体状态的荧光发射波长最大 ,荧光发射强度也最大 ,而以此状态为复性起点 ,最终得到的复性产率也最低。对此原因从分子结构的基础上进行了探讨。     

芬布芬与牛血清白蛋白相互作用的荧光光谱检测

在模拟生理条件下,用荧光光谱法和紫外-可见吸收光谱法研究芬布芬(FBF)和牛血清白蛋白(BSA)结合反应的特征.研究表明:芬布芬与牛血清白蛋白形成复合物,从而猝灭牛血清白蛋白的内源性荧光,该过程为静态猝灭过程.根据Stem-V(o)lmer方程得出了不同温度下结合位点数和结合常数;根据F(0)rster非辐射能量转移理...     

荧光猝灭法研究刚果红与人血清白蛋白的相互作用

在0.050mol.L-1的Tris-HCl缓冲介质中（内含0.10mol.L-1NaCl）,用荧光光谱法在模拟生理条件下,研究了刚果红与人血清白蛋白的相互作用。在不同温度和不同pH值下,刚果红对人血清白蛋白的荧光猝灭作用为静态猝灭机制。根据荧光猝灭双倒数曲线和位点结合模型计算出的刚果红与人血清白蛋白之间的结合常数相当,且结合常数与结合位点数都随温度升高而减小,在pH7.4时最大。根据热力学方法讨论了两者间主要的作用力类型,由重叠积分面积,得出两者的结合距离。由此可见,刚果红与人血清白蛋白之间有很强的结合作用。