Spectroscopic study and application of the interaction mechanism of meloxicam with trypsin

Abstract

In order to explore the interaction between meloxicam and trypsin, the interaction mechanism between meloxicam and trypsin was studied by fluorescence spectrum, UV-vis absorption spectrum, circular dichroism spectrum, and molecular docking simulation under the experimental condition of pH = 7.40. The results of spectral experiments showed that meloxicam could effectively quench the internal fluorescence of trypsin in the form of static quenching, formed a stable complex at 1:1, and changed the conformation of trypsin. The results of thermodynamic constant showed that ΔG?H?S?>?0 indicates that the main force type of the binding system was hydrophobic interaction and hydrogen bonding. Molecular docking technique showed that the best binding site between meloxicam and trypsin was near the catalytic active center of trypsin, and the interaction between them changed the microenvironment of amino acid residues in the catalytic active center of trypsin. The mathematical model of drug and protein showed that when the concentration ratio of meloxicam to trypsin was 1:1, the protein binding rate of the binding system was 5.15%. The concentration ratio of meloxicam to trypsin was 30: 1, and the protein binding rate was 45.4%. The results showed that when the drug concentration was high, the binding effect of the system had a great influence on the concentration of free trypsin.     

The investigation of the interaction between edaravone and bovine serum albumin by spectroscopic approaches

The fluorescence and ultraviolet spectroscopies were explored to study the interaction between edaravone (EDA) and bovine serum albumin (BSA) under imitated physiological condition. The experimental results show that the fluorescence quenching mechanism between EDA and BSA is a combined quenching (dynamic and static quenching). The binding constants, binding sites, and the corresponding thermodynamic parameters (ΔG, ΔH, and ΔS) of the interaction system were calculated at different temperatures. According to Förster non-radiation energy transfer theory, the binding distance between EDA and BSA was calculated to be 3.10 nm. The effect of EDA on the conformation of BSA was analyzed using synchronous fluorescence spectroscopy. In addition, the effects of some common metal ions Mg²⁺, Ca²⁺, Cu²⁺, and Ni²⁺ on the binding constant between EDA and BSA were examined.     

抑制剂Benzamidine与胰岛素作用机制的分子动力学和结合自由能计算研究

氢键和极性相互作用在抑制剂-蛋白结合专一性识别过程中起到重要作用. 抑制剂Benzamidine(BEN)与胰岛素trypsin相互作用机制的阐明有助于胰岛素高效抑制剂的研发.本文采用分子动力学模拟和MM-PBSA(molecular mechanics-Poisson Boltzmann surface area)从原子层次上研究BEN与胰岛素的结合模式.结果表明抑制剂BEN的脒基不仅与Asp189的羰基产生静电相互作用,而且与残基Ser190和Gly214形成氢键相互作用.基于残基能量分解的计算表明抑制剂的苯基与残基His58, Cys191, Gln192, Trp211, Gly212和Cys215形成有利于抑制剂结合的疏水性相互作用.期望当前的研究能为胰岛素有效抑制剂的研发提供重要的理论指导.     

抑制剂Benzamidine与胰岛素作用机制的分子动力学和结合自由能计算研究

氢键和极性相互作用在抑制剂-蛋白结合专一性识别过程中起到重要作用.抑制剂Benzamidine(BEN)与胰岛素trypsin相互作用机制的阐明有助于胰岛素高效抑制剂的研发.本文采用分子动力学模拟和MM-PBSA(molecular mechanics-Poisson Boltzmann surface area)从原子层次上研究BEN与胰岛素的结合模式.结果表明抑制剂BEN的脒基不仅与Asp189的羰基产生静电相互作用,而且与残基Ser190和Gly214形成氢键相互作用.基于残基能量分解的计算表明抑制剂的苯基与残基His58,Cys191,Gln192,Trp211,Gly212和Cys215形成有利于抑制剂结合的疏水性相互作用.期望当前的研究能为胰岛素有效抑制剂的研发提供重要的理论指导.     

Studies on the arctiin and its interaction with DNA by spectral methods

The emission spectra of arctiin were determined under various experimental conditions. In addition, a fluorescence method was developed to obtain the binding constants and sites of the interaction between arctiin and DNA. A competitive binding experiment and melting temperature mensuration were carried out to investigate the binding mechanism of arctiin and DNA. The experimental results showed that the interaction between arctiin and DNA belongs to a groove binding mode.     

Studies on Interaction of CdTe Quantum Dots with Bovine Serum Albumin Using Fluorescence Correlation Spectroscopy

Luminescent quantum dots (QDs) have widely used in some biological and biomedical fields due to their unique and fascinating optical properties, meanwhile the interaction of QDs with biomolecules recently attract increasing attention. In this paper, we employed fluorescence correlation spectroscopy (FCS) to investigate the nonspecific interaction between CdTe QDs and bovine serum albumin (BSA) as a model, and evaluate their stoichiometric ratio and association constant. Our results documented that BSA was able to bind to CdTe QDs and form the QD–BSA complex by a 1:1 stoichiometric ratio. The association constant evaluated is 1.06 ± 0.14 × 10⁷ M⁻¹ in 0.01 M phosphate buffer (pH = 7.4). Furthermore, we found that QD–BSA complex dissociated with increase of ion strength, and we speculated that the interaction of CdTe QDs with BSA was mainly attributed to electrostatic attraction. Our preliminary results demonstrate that fluorescence correlation spectroscopy is an effective tool for investigation of the interaction between quantum dots (or nanoparticles) and biomolecules.     

Effect of glycyl dipeptides on the micellar behavior of gemini surfactant: A conductometric and fluorescence spectroscopic study

The effect of glycyl dipeptides (glycylglycine, glycyl-L-valine, and glycyl-L-leucine) on the micellar properties of gemini surfactant pentamethylene-1,5-bis(dodecyldimethylammonium bromide) (12-5-12) has been investigated by means of conductivity and fluorescence spectroscopy. The results obtained from conductivity show that the effect of glycyl dipeptides depends upon their nature and concentration, as well as the temperature. The values of critical micelle concentration (cmc) of 12-5-12 have been estimated in water + glycyl dipeptide media at various concentrations of dipeptide in the 293.15-318.15 K temperature range at 5 K intervals. From cmc values, it is observed that the micellization tendency of the surfactant increases in the presence of glycyl dipeptides. Thermodynamic parameters (ΔG_m^o, ΔH_m^o, and ΔS_m^o) of micellization of 12-5-12 in aqueous glycyl dipeptide solutions have been obtained by applying the mass action model and an enthalpy-entropy compensation effect was observed. The pyrene fluorescence spectra were used to study the change of micropolarity produced by the interaction of 12-5-12 with glycyl dipeptides, and the aggregation behavior of 12-5-12.     

p-HPcZn与肌红蛋白结合性能的研究

利用荧光光谱和同步荧光光谱技术研究了在模拟人体生理条件下β-四(羧基苯氧基)锌酞菁（p-HPcZn）与肌红蛋白的相互作用。p-HPcZn能够显著地猝灭肌红蛋白的荧光,说明两者之间存在着很强的相互作用。变温荧光光谱实验的结果确证该作用可以导致p-HPcZn分子和肌红蛋白分子之间形成复合物,使得p-HPcZn可以通过静态猝灭有效地猝灭了肌红蛋白的荧光。通过对荧光光谱的数据进行处理得知,p-HPcZn分子和肌红蛋白分子形成复合物的结合常数为2.481×105,结合位点n为0.444。另外,p-HPcZn和肌红蛋白之间发生的相互作用还使肌红蛋白分子的构象发生改变。     

杀鼠剂溴鼠灵与牛血清白蛋白相互作用的光谱法研究

利用紫外吸收光谱,荧光光谱和同步荧光技术研究了牛血清白蛋白和杀鼠剂溴鼠灵的相互作用.结果表明溴鼠灵对牛血清白蛋白的内源荧光有较强的猝灭作用,两者形成了新的复合物,属于静态荧光猝灭,并且伴随着分子内的非辐射能量转移.通过双倒数及双对数曲线计算了不同温度下的猝灭速率常数Ksv,结合位点数n,结合常数KA,并根据相对应的热力学参数判断二者之间主要为疏水作用力.依据F(o)rster非辐射能量转移理论求出了溴鼠灵和蛋白质问的结合距离r,确定了溴鼠灵在蛋白质上的结合位置.在20和30℃时r分别为2.84和2.87 nm.同步荧光光谱显示,与溴鼠灵作用后BSA分子的二级结构发生了改变.初步探讨了二者的结合模式与作用机制:溴鼠灵分子通过静电引力靠近蛋白质的疏水腔,并以疏水作用力与疏水腔中的氨基酸残基发生相互作用,导致色氨酸残基微环境极性变化.其结果不但阻止了酪氨酸残基与色氨酸残基间的能量转移,而且使色氨酸残基与溴鼠灵分子间产生非辐射能最转移,从而猝灭BSA的内源荧光.     

应用荧光猝灭法研究尼莫地平与牛血清白蛋白的相互作用

应用荧光光谱(FS)和紫外光谱(UV)研究了尼莫地平与牛血清白蛋白(BSA)之间的相互作用。尼莫地平与BSA的结合常数K_A为5.01×104(26 ℃)和4.46×104(36 ℃),尼莫地平在BSA上的结合位点数为1.08±0.01。根据Frster非辐射能量转移理论,求出了尼莫地平与BSA之间的结合距离为3.14 nm(26 ℃)和3.10 nm(36 ℃)。实验表明静态猝灭和非辐射能量转移是 导致尼莫地平对BSA荧光猝灭的两大原因。通过计算热力学参数,可知该药物与牛血清白蛋白的相互作用是一个吉布斯自由能降低的自发过程,且二者之间的作用力以静电相互作用为主。     

L-半胱氨酸二肽与DNA的相互作用研究

以溴化乙锭(EB)为荧光探针,利用紫外-可见光谱法和荧光分光光度法等手段研究了L-半胱氨酸二肽(Cys-Cys)与DNA的相互作用,并推测了其相互作用机理和作用模式。结果表明： 随着二肽浓度的增加,DNA-Cys-Cys体系的紫外光谱先呈减色效应,继续增大其浓度时又呈增色效应;盐效应实验表明此相互作用容易受环境中离子强度的影响;随着二肽浓度的增加,EB-DNA复合体系的荧光猝灭,Stern-Volmer方程说明此过程为静态猝灭,通过Lineweaver-Burk方程计算得到两者作用的结合常数为1.640×104 L·mol-1。综合以上结果可知： Cys-Cys与DNA的作用方式主要为静电结合。这一实验结果为进一步在分子水平上研究寡肽类小分子与DNA的作用提供一定的理论依据。     

超高压引发胰蛋白构象变化与酶活性间的关系

采用超高压技术处理胰蛋白酶,改变其空间结构,研究酶空间结构变化与酶活力之间的关系。采用傅立叶红外光谱(FTIR)检测超高压处理后胰蛋白酶的二级结构变化;采用荧光光谱检测处理后胰蛋白酶的三级结构;酶活力的检测采用福林酚法。结果显示,与未处理的相比,在37 ℃,不同压力(100～600 MPa)条件处理20 min,对胰蛋白酶活力影响显著(p＜0.05)。其中,300 MPa处理,胰蛋白酶活力达到最大,较未处理的酶活提高了0.386倍。FTIR检测分析显示,300 MPa处理的胰蛋白酶,α-螺旋与β-转角的峰面积比值达到最大(2.749);内源性荧光光谱检测结果显示,当激发波长为295 nm,其荧光强度达到最高值(1 353);激发波长为280 nm,其荧光强度达到最高(4 262);外源性荧光光谱结果显示,当激发波长为228 nm,疏水氨基酸残基的荧光强度达到最高(2 022); 上述荧光强度的变化较0.1 MPa处理的胰蛋白酶均有显著差异(p＜0.05)。结论：超高压处理影响胰蛋白酶的空间结构及酶活性。其中,胰蛋白酶活性与α-螺旋和β-转角的峰面积的比值、色氨酸等疏水氨基酸及酪氨酸残基暴露程度有关。     

槲皮素与牛血清白蛋白相互作用的研究

利用荧光光谱(FS)和紫外光谱(UV)法研究了槲皮素与牛血清白蛋白之间的相互作用。结果表明,静态猝灭和非辐射能量转移是导致槲皮素对BSA荧光猝灭的两大原因,槲皮素与BSA的结合常数K_A为2.8×108(26 ℃)和3.1×108(36 ℃),结合位点数为1.76±0.01,根据Frster非辐射能量转移理论得到槲皮素与BSA之间的结合距离为3.25 nm (26 ℃)和3.30 nm(36 ℃),表明槲皮素的部分片段可以插入BSA分子内部。通过计算热力学参数,可知该药物与蛋白的相互作用是一个熵增加和吉布斯自由能降低的自发过程,并由此推断槲皮素与BSA之间的作用力是以疏水相互作用为主。     

Probing the interaction of flower-like CdSe nanostructure particles targeted to bovine serum albumin using spectroscopic techniques

The interaction between flower-like CdSe nanostructure particles (CdSe NP) and bovine serum albumin (BSA) was investigated from a spectroscopic angle under simulative physiological conditions. Under pH 7.4, CdSe NP could effectively quench the intrinsic fluorescence of BSA via static quenching. The binding constant (K_A) was 6.38, 3.27, and 1.90×10⁴ M⁻¹ at 298, 304, and 310 K, respectively and the number of binding sites was 1.20. According to the Van't Hoff equation, the thermodynamic parameters (ΔH°=−77.48 kJ mol⁻¹, ΔS°=−168.17 J mol⁻¹ K⁻¹) indicated that hydrogen bonds and van der Waals forces played a major role in stabilizing the BSA−CdSe complex. Besides, UV-vis and circular dichroism (CD) results showed that the addition of CdSe NP changed the secondary structure of BSA and led to a decrease in α-helix. These results suggested that BSA underwent substantial conformational changes induced by flower-like CdSe nanostructure particles.     

Fluorimetric Determination of Cerium(IV) with Ascorbic Acid

A simple, sensitive, and selective method for the determination of cerium(IV), based on the oxidative reaction between cerium(IV) and ascorbic acid, has been described. The fluorescence comes from Ce(III) at λ_excitation 298 nm and λ_emission 358 nm, which, in turn, is obtained from the oxidation of ascorbic acid by Ce(IV) in the presence of sulfuric acid. The optimum conditions such as concentrations of ascorbic acid, sulfuric acid media and pH of the buffer solution were investigated. The fluorescent intensity of the system is linear over the range 0.0531 μg/ml to 0.3322 mg/ml Ce(IV) and detection limit and correlation coefficient are 0.0145 μg/ml and R=0.99987,respectively.     

荧光光谱法研究核黄素与核黄素结合蛋白的相互作用

运用荧光光谱研究了核黄素与核黄素结合蛋白的相互作用,并探讨了两者间的结合类型、结合常数、结合过程中热力学参数和能量转移。结果表明:核黄素结合蛋白内源荧光的猝灭是由于核黄素与蛋白质之间形成复合物,并符合静态猝灭机理。298,308,318K下核黄素与核黄素结合蛋白的结合常数分别为:5.35×108,1.54×108,0.56×108 L.mol-1。热力学数据表明核黄素与核黄素结合蛋白之间主要作用力为氢键和范德华力。Frster能量转移理论确定了核黄素与核黄素结合蛋白的作用距离与能量转移效率分别为0.70nm与0.39。利用同步荧光光谱研究了核黄素结合蛋白与核黄素结合过程中构象的变化。     

马钱子碱与牛血清白蛋白相互作用的研究

应用荧光光谱和紫外光谱法研究了马钱子碱与牛血清白蛋白(BSA)的结合反应,求得它们之间的结合常数K_A和结合位点数n分别为K_A=6.3×103,n=0.94(27 ℃);K_A=7.7×103,n=0.97(37 ℃)。根据Frster非辐射能量转移理论求出了马钱子碱与BSA之间的结合距离为3.99 nm(27 ℃)和4.21 nm(37 ℃)。探讨了马钱子碱的荧光猝灭机理,结果表明马钱子碱能够插入BSA内部形成基态复合物导致内源荧光猝灭,猝灭机理主要是静态猝灭和非辐射能量转移。根据热力学参数确定马钱子碱与BSA之间的作用力类型主要为疏水性相互作用。     

Spectroscopic and voltammetric characterizations of the interaction of two local anesthetics with bovine serum albumin

The interactions of bovine serum albumin (BSA) with two local anesthetics, procaine hydrochloride (PCH) and tetracaine hydrochloride (TCH) were studied using spectroscopic methods such as fluorescence and ultraviolet visible (UV-vis), and electrochemical techniques including cyclic voltammetry (CV) and differential pulsed stripping voltammetry (DPSV). The results obtained from these techniques turned out that both PCH and TCH could bind to BSA. The binding constants (K_A) and the number of binding sites (n) of the two drugs with BSA at different temperatures were determined, respectively. At 291 K, K_A was found as 2.40×10⁴ and 1.42×10⁴ L mol⁻¹ and n was 1.03 and 0.99 for PCH-BSA and TCH-BSA, respectively. According to van’t Hoff equation, the thermodynamic parameters, ΔG, ΔH and ΔS, were obtained, showing the involvement of hydrophobic and electrostatic force in these interactions. Based on the theory of the Förster energy transference, the distance between the acceptor (PCH or TCH) and the donor (BSA) were determined as 2.32 and 3.62 nm for PCH and TCH, respectively. The effects of Fe³⁺, Cu²⁺, Mg²⁺, Mn²⁺, Zn²⁺ and Ca²⁺ on the binding of PCH or TCH to BSA were also evaluated.     

Binding study of diprophylline with lysozyme by spectroscopic methods

The binding properties of diprophylline (DPP) to lysozyme (Lys) were investigated using fluorescence spectroscopy in combination with UV-vis absorption techniques under simulative physiological conditions. Results of fluorescence measurement indicated that the intrinsic fluorescence of Lys was strongly quenched by DPP. The binding constants and the number of binding sites at different temperatures (298, 310, and 318 K) calculated with the data obtained from fluorescence quenching experiments via the modified Stern-Volmer equation were 8.61×10⁴ L mol⁻¹ and 1.34; 10.36×10⁴ L mol⁻¹ and 1.22; 12.85×10⁴ L mol⁻¹ and 1.11, respectively. Positive values of ΔH⁰ and ΔS⁰ obtained according to the Van’t Hoff equation for the formation of the DPP-Lys complex implied that typical hydrophobic interactions might play a significant role during the binding process. Furthermore, the effect of DPP on the conformation change of Lys was analyzed using synchronous fluorescence measurement. The effects of common co-ions on the interaction of DPP with Lys were also discussed.     

荧光探针技术研究阿特拉津与ct-DNA的相互作用

利用分子荧光探针和紫外吸收光谱技术研究了阿特拉津（Atrazine）与小牛胸腺DNA（ct-DNA）之间的相互作用。实验中选用溴化乙锭（EB）为荧光探针,考察了阿特拉津浓度、磷酸盐、离子强度以及碘化钾对系统荧光的影响。结果表明,阿特拉津对ct-DNA-EB体系的荧光存在猝灭现象,并同时存在静态和动态两种猝灭方式。KI对ct-DNA-Atrazine体系的荧光猝灭及阿特拉津使ct-DNA紫外吸收的增色和红移现象表明阿特拉津与ct-DNA之间存在嵌插作用。磷酸盐、离子强度对ct-DNA-EB-Atrazine体系的荧光强度影响表明,阿特拉津与ct-DNA的磷酸基之间存在非特征性的静电作用,并且高离子强度不利于这种作用。