The tautomerism of 5-chloro-2-hydroxypyridine. Comments on a paper by Srivastava and Prasad

Infrared and U.V. spectra are presented to show that 5-chloro-2-hydroxypyridine exists mainly in the pyridone form in solution in carbon tetrachloride, chloroform and cyclohexane, with extensive NH⋯OC intermolecular association at least in the former two solvents; in dioxane the pyridone and the pyridinol form are present in roughly equal amounts. As 2-pyridones are capable of forming centrosymmetric bimolecules of zero dipole moment, replacement of a highly polar solvent by a non-polar one does not necessarily displace the tautomeric equilibrium to predominance of the pyridinol tautomer, even though that has a much lower dipole moment than an individual 2-pyridone molecule. Some conclusions of Srivastava and Prasad's are questioned.     

Influence of the solvents on the γ-ray polymerization of acrylic acid. I.

Bulk polymerization of acrylic acid is controlled by linear plurimolecular H-bonded aggregates of the monomer. It is proved that it is not the precipitating medium that is responsible for the accelerated rate of the polymerization, but the presence of the H-bonded plurimolecular aggregates. It has been shown that the presence of the previously formed polymer is important, as it gives a matrix effect which allows the monomer aggregated to be stabilized by associating with the polymer. In polymerizing acrylic acid solutions, two types of solvents have been characterized: first, the polar solvents which do not destroy the H-bonded aggregates up to high dilutions. Then, in the presence of hydrocarbons or chlorinated solvents, 10–20% of the solvents dissociate the aggregates. A very striking parallelism is observed between the polymerization kinetics and the associated form of the monomer.     

Ion-pair formation in the ionic liquid 1-ethyl-3-methylimidazolium bis(triflyl)imide as a function of temperature and concentration.

The structures and ion-pair formation in the ionic liquid (IL) 1-ethyl-3-methylimidazolium bis(trifluoromethylsulfonyl)imide are studied by a combination of FTIR measurements and DFT calculations. We could clearly distinguish imidazolium cations that are completely H-bonded to anions from those that are single H-bonded in ion pairs. Ion-pair formation already occurs in the neat IL and rises with temperature. Ion-pair formation is strongly promoted by dilution of the IL in chloroform. In these weakly polar environments ion pairs H-bonded via C(2)H are strongly favored over those H-bonded via C(4,5)H. This finding is in agreement with DFT (gas phase) calculations, which show a preference for ion pairs H-bonded via C(2)H as a result of the acidic C(2)H bond.     

Time-resolved resonance Raman and density functional theory study of the deprotonation reaction of the triplet state of p-hydroxyacetophenone in water solution

[reaction; see text] Picosecond and nanosecond time-resolved resonance Raman (TR(3)) spectroscopy was employed to investigate the deprotonation/ionization reaction of p-hydroxyacetophenone (HA) after ultraviolet photolysis in water solution. The TR(3) spectra in conjunction with density functional theory (DFT) calculations were used to characterize the structure and dynamics of the excited-state HA deprotonation to form HA anions in near neutral water solvent. DFT calculations based on a solute-solvent intermolecular H-bonded complex model containing up to three water molecules were used to evaluate the H-bond interactions and their influence on the deprotonation reaction and the structures of the intermediates. The deprotonation reaction was found to occur on the triplet manifold with a planar H-bonded HA triplet complex as the precursor species. The HA triplet species is generated within several picoseconds and then decays with a approximately 10 ns time constant to produce the HA triplet anion species after 267 nm photolysis of HA in water solution. The triplet anion species was observed to decay with a time constant of about 90 ns into the ground-state anion species that was found to have a lifetime of about 200 ns. The DFT calculations on the H-bonded complexes of the anion triplet and ground-states species suggest that these anion species are H-bonded complexes with planar quinonoidal structures containing two water molecules H-bonded, respectively, with oxygen lone pairs of the carbonyl and deprotonated hydroxyl moieties. A deactivation scheme of the photoexcited HA in regard to the deprotonation reaction in neutral water solutions was proposed. With the above dynamic and structural information available, we briefly discuss the possible implications of the model HA photochemistry in water solutions for the photodeprotection reactions of related p-HP phototrigger compounds in aqueous solutions.     

Preliminary communication Properties of nonlinear supramolecular liquid crystals containing thiophenedicarboxylic acids

Novel mesogenic supramolecules have been constructed from the 2 :1 molar ratio of trans 4-alkoxy-4-stilbazoles CnPS (1) complexed with 2,5-thiophenedicarboxylic acid THDA (4) to form the kinked hydrogen-bonded (H-bonded) complexes (CnPS)-THDA. The analogous H-bonded complexes (CnPP)2-THDA consisting of the 2:1 molar ratio of 4-alkoxypyridines CnPP (2) and THDA (4) are also compared. In contrast to linear complexes (CnPS)2-TA prepared from the 2 :1 molar ratio of CnPS (1) and terephthalic acid TA (5), supramolecular liquid crystals with kinked molecular structures (CnPS)2-THDA are generated by introducing the thiophene unit into the H-bonded complexes. In addition, the chiral complex (C5*PS)2-THDA composed of an optically active proton acceptor (S)-(-)-4-(2-methylbutoxy)-4-stilbazole C5*PS ( 3 ) and THDA ( 4 ) (2 :1 molar ratio) is reported. Significantly, the first thiophene based supramolecular liquid crystals have been constructed in this study, and the mesogenic properties of the supramolecules can be easily adjusted not only by the nonlinear shape of the thiophene unit but also by the dipole moment derived from the lone-pair electrons of the sulphur hetero-atom.     

Polymerization and copolymerization in associated monomer aggregates

The polymerization of acrylic acid in bulk is controlled by linear plurimolecular H-bonded aggregates of the monomer which lead to the formation of a syndiotactic polymer. Polar solvents do not dissociate these aggregates unless high dilutions are reached. In contrast, “normal” kinetics are observed in the presence of 10–20 per cent toluene, n-hexane or chloroform. The polymerization of methacrylic acid is not affected to the same extent by molecular aggregates. In the copolymerization of acrylic acid with methyl acrylate or acrylonitrile, the reactivity ratios are altered by solvents. The acrylic acid content is higher in copolymers formed in bulk than in toluene solution. But similar effects are observed in the presence of DMF which does not dissociate the aggregates of acrylic acid; moreover, copolymerization data obtained with methacrylic acid indicate that other factors may be involved in determining reactivity ratios.Acrylamide also forms H-bonded aggregates and its copolymerization behaviour is strongly affected by solvents. No simple correlation holds, however, between reactivity ratios and extent of association.A very strict control of chain propagation occurs when 4-vinylpyridine is polymerized in the presence of polycarboxylic acids. A considerable rate increase was observed when vinylpyridine was grafted into polytetrafluoroethylene films which contained poly(acrylic acid) branches. This effect is explained by assuming that the pyridine groups form strong associations with the carboxylic sites, thereby providing a very favourable orientation of the vinyl groups for chain propagation.     

Scope and limitations of the SCS-MP2 method for stacking and hydrogen bonding interactions

Fluorobenzenes are pi-acceptor synthons that form pi-stacked structures in molecular crystals as well as in artificial DNAs. We investigate the competition between hydrogen bonding and pi-stacking in dimers consisting of the nucleobase mimic 2-pyridone (2PY) and all fluorobenzenes from 1-fluorobenzene to hexafluorobenzene (n-FB, with n = 1-6). We contrast the results of high level ab initio calculations with those obtained using ultraviolet (UV) and infrared (IR) laser spectroscopy of isolated and supersonically cooled dimers. The 2PY.n-FB complexes with n = 1-5 prefer double hydrogen bonding over pi-stacking, as diagnosed from the UV absorption and IR laser depletion spectra, which both show features characteristic of doubly H-bonded complexes. The 2-pyridone.hexafluorobenzene dimer is the only pi-stacked dimer, exhibiting a homogeneously broadened UV spectrum and no IR bands characteristic for H-bonded species. MP2 (second-order M?ller-Plesset perturbation theory) calculations overestimate the pi-stacked dimer binding energies by about 10 kJ/mol and disagree with the experimental observations. In contrast, the MP2 treatment of the H-bonded dimers appears to be quite accurate. Grimme's spin-component-scaled MP2 approach (SCS-MP2) is an improvement over MP2 for the pi-stacked dimers, reducing the binding energy by approximately 10 kJ/mol. When applied to explicitly correlated MP2 theory (SCS-MP2-R12 approach), agreement with the corresponding coupled-cluster binding energies [at the CCSD(T) level] is very good for the pi-stacked dimers, within +/- 1 kJ/mol for the 2PY complexes with 1-fluorobenzene, 1,2-difluorobenzene, 1,2,4,5-tetrafluorobenzene, pentafluorobenzene and hexafluorobenzene. Unfortunately, the SCS-MP2 approach also reduces the binding energy of the H-bonded species, leading to disagreement with both coupled-cluster theory and experiment. The SCS-MP2-R12 binding energies follow the SCS-MP2 binding energies closely, being about 0.5 and 0.7 kJ/mol larger for the H-bonded and pi-stacked forms, respectively, in an augmented correlation-consistent polarized valence quadruple-zeta basis. It seems that the SCS-MP2 and SCS-MP2-R12 methods cannot provide sufficient accuracy to replace the CCSD(T) method for intermolecular interactions where H-bonding and pi-stacking are competitive.     

Self-association free bifunctional thiourea organocatalysts: synthesis of chiral α-amino acids via dynamic kinetic resolution of racemic azlactones

Concentration-independent high enantioselectivity in the dynamic kinetic resolution (DKR) of racemic azlactones affording chiral α-aminoesters has been achieved using self-association free thiourea-based dimeric cinchona alkaloid organocatalysts. Detailed experimental studies and single crystal X-ray analysis confirmed that these bifunctional organocatalysts I do not form H-bonded self-aggregates in either solution or solid state.     

Designed Synthesis of a 1D Polymer in Twist-Stacked Topology via Single-Crystal-to-Single-Crystal Polymerization

To synthesize a fully organic 1D polymer in a novel twist-stacked topology, we designed a peptide monomer HC≡CCH₂-NH-Ile-Leu-N₃, which crystallizes with its molecules H-bonded along a six-fold screw axis. These H-bonded columns pack parallelly such that molecules arrange head-to-tail, forming linear non-covalent chains in planes perpendicular to the screw axis. The chains arrange parallelly to form molecular layers which twist-stack along the screw axis. Crystals of this monomer, on heating, undergo single-crystal-to-single-crystal (SCSC) topochemical azide–alkyne cycloaddition (TAAC) polymerization to yield an exclusively 1,4-triazole-linked polymer in a twist-stacked layered topology. This topologically defined polymer shows better mechanical strength and thermal stability than its unordered form, as evidenced by nanoindentation studies and thermogravimetric analysis, respectively. This work illustrates the scope of topochemical polymerizations for synthesizing polymers in pre-decided topologies.     

Porous 3-D honeycomb architecture by self-assembly of helical H-bonded molecular tapes

Enantiopure dipeptide-derived 1,3,5-triazepan-2,6-diones and form H-bonded 3(1) helical molecular tapes with P chirality in the solid state; in the case of , these columnar tapes self-assemble through aromatic-aromatic interactions to give hollow tubular structures.     

Preliminary communication - The effects of bending sites on unconventionally shaped hydrogen-bonded liquid crystals

Angular mesogenic structures of hydrogen-bonded supramolecules have been constructed from a 1:1 molar ratio of 3(or 4)-decyloxybenzoic acid, MA (or PA), mixing either with trans-4-alkoxy-3'(or 4')-stilbazoles, CnM (or CnP), or with their analogous N -oxides (CnMO and CnPO) to form the hydrogen-bonded (H-bonded) complexes CnPPA, CnPMA, CnMPA, CnPOPA, CnPOMA and CnMOPA. By controlling the relative bending position of the H-bonded complexes, the variety of supramolecules offer new molecular structures of different linearities. By means of these bending effects we are able to tune the shape of the molecular architecture and thus to modify molecular packing as well as mesogenic properties. New liquid crystalline properties are introduced by the nonlinear effects of molecular geometry, and powder X-ray diffraction (XRD) patterns have confirmed their novel molecular architectures.     

Structure of liquid formic acid investigated by first principle and classical molecular dynamics simulations

The structure of liquid formic acid has been investigated by Car-Parrinello and classical molecular dynamics simulations, focusing on the characterization of the H-bond network and on the mutual arrangement of pairs of bonded molecules. In agreement with previous computational studies, two levels of H-bonded structures have been found. Small clusters, characterized by O-H...O bonds, are held together by weak C-H...O bonds to form large branched structures. From the ab initio simulation we infer the importance of cyclic H-bond dimer configurations, typical of the gas phase. Most of these dimer structures are however found to be embedded into H-bonded chains. When only O-H...O bonds are taken into account, linear H-bond chains are detected as basic structures of the liquid. More branched structures occur when C-H...O bonds are also considered. Regarding the arrangement of molecular pairs, we observed that O-H...O bonds favor the occurrence of configurations with parallel molecular planes, whereas no preferential orientation is observed for molecules forming C-H...O bonds.     

Molecular structure and hydrogen bonds in solid dimethylol propionic acid (DMPA)

The H-bonds in dimethylol propionic acid (DMPA) are investigated through the spectra changes between -150 and 180 degrees C, the spectra comparison before and after the pendent carboxylic group was neutralized as well as after DMPA was partly deuterated. Vibrational bands assignment is proposed based on the group frequency, band shape, intensity and the crystal structure. It was found that the highly crystallized DMPA is also highly H-bonded with the obvious crystal relating bands besides the typical H-bonded characteristic bands of both alcohols and carboxylic acids. The packing mode of carboxylic acid is similar to long-chain polymers to some extent but possesses the dimer spectra characteristic, especially still showing the prominent out-of-plane bending vibrational band gammaOH. The three hydroxyls, including the carboxylic hydroxyl, are all in the different H-bond states, showing three H-bonded hydroxyl bands with different frequencies. The frequency, intensity and shape of nuOH relates not only to OH bond length, but also to H-bond length as well as the bond angle. The H-bond in carboxylic hydroxyl is more sensitive to temperature changes and deuteration whereas the two primary hydroxyls form another H-bond pattern after DMPA was neutralized. It was also found that the possible overtone of gammaOH appears at lower temperature.     

H-Bonded Liquid Crystalline Polymer Network Materials

Side-chain copolymers, poly(mOBA-co-mStilb)s, composed of proton acceptors (stilbazoles) and proton donors (benzoic acids) connected to polyacrylate backbone with different methylene spacer lengths (m = 6 and 10) were prepared in different donor/acceptor molar ratios. The H-bonded copolymeric networks were formed once they were synthesized, and showed more homogenous phase than the physical-blended supramolecular networks consisting of donor and acceptor homopolymers, i.e.H-bonded blends of PmOBA and PmStilb. In order to compare the effects of the backbone connection of these H-bonded copolymers and blends, we also built monomer-monomer and polymer-monomer H-bonded complexes of similar structures (shown in Fig. 1). DSC, POM, and powder XRD studies reveal that the copolymers (m = 10)with mole fractions of benzoic acids between 0.33-0.83 show the smectic A (SMA) phase with layer spacing values between 42.22A-50.47A (increases with higher H-bonded crosslinking density between benzoic acids and stilbazoles), while for m = 6, liquid crystalline behavior still can be observed at 0.89 molar fraction of benzoic acids. However, on the basis of powder XRD study it is found that the d spacing values of H-bonded copolymers with m = 6 in the SmA phase increase with higher molar ratios of benzoic acids, which is agreed with the formation of microphase separation due to the hydrogen bonds of benzoic acids connected themselves from the same backbone. The isotropization temperatures of the H-bonded copolymers and blends increase as the molar ratios of benzoic acids increase, while the higher crosslinking density of the H-bonded copolymeric networks and blends can stabilize the liquid crystalline phase.     

RELATIVE GROUND AND EXCITED STATE ENERGIES OF CH3(CH=CH)5CH=NC4H9, ITS HYDROGEN-BONDED AND PROTON-TRANSFERRED SPECIES,AND CHARGE PARTITIONING AND DISTRIBUTION IN THE PROTONATED SCHIFF BASE OF RETINAL*

Abstract— CH₃(CH=CH)₅CH=NC₄H₉ (compound 1) is structurally related to the Schiff base of retinal, the prosthetic group in visual pigments. Dilute solutions of a weak acid (phenol) and 1 in a hydrocarbon solvent, when subjected to decreasing temperature, show striking changes in electronic absorption spectra. Initially only the spectrum of compound 1 is present, but as the temperature is lowered, the absorbance of 1 decreases, and the spectrum of the H-bonded form of 1 appears and increases. Continued temperature lowering then causes a decrease in absorption of the H-bonded form and an appearance and rise in absorption of the proton-transfcrred form of 1. Concentrations of the various species are measured as a function of temperature, and by standard procedures, the thermodynamic constants for both reaction steps are computed. Values of Δ⁰ are taken as relative energies among the three ground states, and the λ_max value of each species yields relative energies among excited states. By employing data from electronic absorption spectroscopy, nuclear magnetic resonance (NMR) and theoretical calculations for retinal Schiff base, charge partitioning between nitrogen and the polyene chain and charge distribution among the carbon atoms of the polyene chain are calculated.     

Novel H-bonded base dimers as repeat units for information-bearing self-associative duplexes: a B3LYP/6-31G* search

Density functional theory at the B3LYP/6-31G* level with counterpoise correction has been employed to study six sets of nitrogenous bases for the capacity of each to form H-bonded dimers restricted to a chosen pairing configuration. These results are augmented by MP2/6-311++G(d,p) single point calculations on the B3LYP/6-31G* optimized geometries. Each set has two bases, including substituted azoles, imidazoles, pyrimidines, and fused ring systems. This study aims to determine the suitability of each set to furnish H-bonded base pairs which may serve as repeat units for self-associative H-bonded macromolecular duplexes with the capacity to store and replicate information at the molecular level. Out of the various possibilities tested here, a set of two substituted pyrimidines best satisfies the prescribed criteria and may be put forward as a good candidate to yield isomorphic repeat units for designing such synthetic information-bearing macromolecular duplexes. The optimized configurations of these chosen base pairs as calculated at the B3LYP/6-31G* level compare well with those calculated at the B3LYP/6-31++G(d,p) and MP2/6-31G(d,p) levels, and indicate that isomorphism of the two base pairs is independent of method used. Assuming a one-to-one correspondence for encoding information in the macromolecule, such a set of two bases can allow the macromolecule to encode up to 8 types of encrypted species.     

Cooperativity in ordinary ice and breaking of hydrogen bonds

The total interaction energy between two H-bonded water molecules in a condensed phase is composed of a binding energy between them and an energy due to a cooperative effect. An approximate simple expression is suggested for the dependence of the interaction energy between two H-bonded water molecules on the number of neighboring water molecules with which they are H-bonded. Using this expression, the probabilities of breaking a H bond with various numbers of H-bonded neighbors are estimated. These probabilities are used in computer simulations of the breaking of specified fractions of H bonds in an ordinary (hexagonal) ice. A large "piece" of hexagonal ice (up to 8 millions molecules) is built up, and various percentages of H bonds are considered broken. It is shown that 62-63% of H bonds must be broken in order to disintegrate the "piece" of ice into disconnected clusters. This value is only a little larger than the percolation threshold (61%) predicted both by the percolation theory for tetrahedral ice and by simulations in which all H bonds were considered equally probable to be broken. When the percentage of broken bonds is smaller than 62-63%, there is a network of H-bonded molecules which contains the overwhelming majority of water molecules. This result contradicts some models of water which consider that water consists of a mixture of water clusters of various sizes. The distribution of water molecules with unequal probabilities for breaking is compared with the simulation involving equal probabilities for breaking. It was found that in the former case, there is an enhanced number of water monomers without H bonds, that the numbers of 2- and 3-bonded molecules are smaller, and the number of 4-bonded molecules is larger than in the latter case.     

Columnar Phases from Covalent and Hydrogen-Bonded Liquid-Crystalline Ferrocene Derivatives

The synthesis and liquid-crystalline properties of tetracatenar covalent and H-bonded bis-ferrocene derivatives 1 and 2 , respectively, are reported. Both compounds gave rise to enantiotropic columnar liquid-crystalline behavior with a hexagonal molecular organization. To explore the possibility to obtain also calamitic liquid-crystalline phases from H-bonded ferrocene-containing liquid crystals, a rod-shaped ferrocene mesogen 3 was synthesized, which gave rise to enantiotropic smectic C and smectic A phases. For the first time, a rational synthetic design at the ferrocene level led to ferrocene-based liquid-crystals with columnar behavior and to H-bonded metallomesogens.