Influence of Nanoparticle Size and Shape on Oligomer Formation of an Amyloidogenic Peptide

Understanding the influence of macromolecular crowding and nanoparticles on the formation of in-register β-sheets, the primary structural component of amyloid fibrils, is a first step towards describing in vivo protein aggregation and interactions between synthetic materials and proteins. Using all atom molecular simulations in implicit solvent we illustrate the effects of nanoparticle size, shape, and volume fraction on oligomer formation of an amyloidogenic peptide from the transthyretin protein. Surprisingly, we find that inert spherical crowding particles destabilize in-register β-sheets formed by dimers while stabilizing β-sheets comprised of trimers and tetramers. As the radius of the nanoparticle increases crowding effects decrease, implying smaller crowding particles have the largest influence on the earliest amyloid species. We explain these results using a theory based on the depletion effect. Finally, we show that spherocylindrical crowders destabilize the ordered β-sheet dimer to a greater extent than spherical crowders, which underscores the influence of nanoparticle shape on protein aggregation.     

Translocation of a heterogeneous polymer

We present results on the sequence dependence of translocation kinetics for a partially charged heteropolymer moving through a very thin pore using theoretical tools and Langevin dynamics simulational techniques. The chain is composed of two types of monomers of differing frictional interaction with the pore and charge. We present exact analytical expressions for passage probability, mean first passage time, and mean successful passage times for both reflecting/absorbing and absorbing/absorbing boundary conditions, showing rich and unexpected dependence of translocation behavior on charge fraction, distribution along the chain, and electric field configuration. We find excellent qualitative and good quantitative agreement between theoretical and simulation results. Surprisingly, there emerges a threshold charge fraction of a diblock copolymer beyond which the success rate of translocation is independent of charge fraction. Also, the mean successful translocation time of a diblock copolymer displays non-monotonic behavior with increasing length of the charged block; there is an optimum length of the charged block where the mean translocation rate is the slowest; and there can be a substantial range of higher charge fractions which make the translocation slower than even a minimally charged chain. Additionally, we find for a fixed total charge on the chain, finer distribution along the backbone significantly decreases mean translocation time.     

Unfolded protein and peptide dynamics investigated with single-molecule FRET and correlation spectroscopy from picoseconds to seconds

Single-molecule fluorescence spectroscopy and correlation methods are finding increasing applications in the investigation of biomolecular dynamics, especially together with F?rster resonance energy transfer (FRET). Here, we use the combination of start-stop experiments and classical fluorescence correlation spectroscopy (FCS) to obtain complete intensity auto- and cross-correlation functions from picoseconds to seconds for investigating the dynamics of unfolded proteins and peptides. In combination with distance information from single-molecule transfer efficiency histograms, we can analyze the data in terms of a diffusive process on a potential of mean force to obtain intramolecular diffusion coefficients. This allows us to extend our previous analysis of the time scales of chain dynamics into the low nanosecond range for peptides and into the microsecond range for a small cold shock protein (Csp). Dynamics in short unstructured peptides can be detected down to a time scale of about 10 ns, placing a lower limit on the time scales accessible with correlation methods and currently used dye pairs. We find no evidence for microsecond fluctuations in unfolded Csp, suggesting that its global chain dynamics occur predominantly in the tens of nanosecond range. We further investigate the position dependence of these dynamics by placing donor and acceptor dyes at different positions within the chain and find a decrease in the intramolecular diffusion coefficient by a factor of 3 upon moving one of the dyes toward the center of the polypeptide. Obtaining dynamic information on a wide range of time scales from single-molecule photon statistics will be of increasing importance for the study of unfolded proteins and for biomolecules in general.     

Glassy dynamics and kinetic vitrification of isotropic suspensions of hard rods

A nonlinear Langevin equation (NLE) theory for the translational center-of-mass dynamics of hard nonspherical objects has been applied to isotropic fluids of rigid rods. The ideal kinetic glass transition volume fraction is predicted to be a monotonically decreasing function beyond an aspect ratio of two. The functional form of the decrease is weaker than the inverse aspect ratio. Vitrification occurs at lower volume fractions for corrugated tangent bead rods compared to their smooth spherocylinder analogs. The ideal glass transition signals a crossover to activated dynamics, which is estimated to be observable before the nematic phase boundary is encountered if the aspect ratio is less than roughly 25. Calculations of the glassy elastic shear modulus and absolute yield stress reveal a roughly exponential growth with volume fraction. The dependence of entropic barriers and mean barrier hopping times on concentration for rods of variable aspect ratios can be collapsed quite well based on a difference volume fraction variable that quantifies the distance from the ideal glass boundary. Full numerical solution of the NLE theory via stochastic trajectory simulation was performed for tangent bead rods, and the results were compared to their hard sphere analogs. With increasing shape anisotropy the characteristic length scales of the nonequilibrium free energy increase and the magnitude of the localization well and entropic barrier curvatures decreases. These changes result in a significant aspect ratio dependence of dynamical properties and time correlation functions including weaker intermediate time subdiffusive transport, stronger two-step decay of the incoherent dynamic structure factor, longer mean alpha relaxation time, and stronger wavevector-dependent decoupling of relaxation times and the self-diffusion constant. The theoretical results are potentially testable via computer simulation, confocal microscopy, and dynamic light scattering.     

Degree of micelle ionization and micellar growth for gemini surfactants detected by 6-methoxy-N-(3-sulfopropyl)quinolinium fluorescence quenching

The degree of micelle ionization of gemini surfactants has been investigated by using halide-sensitive fluorescence probes (e.g., 6-methoxy-N-(3-sulfopropyl)quinolinium (SPQ)). The fluorescence is quenched by the free bromide ions dissociated from surfactants. The degree of micelle ionization increased with increasing spacer chain length, but it decreased with increasing surfactant concentration. The Stern-Volmer plot gave two inflection points (i.e., not only at the cmc but also far above the cmc). The second inflection point suggested spherocylindrical micellar growth with decreases in the degree of micelle ionization. The spherocylindrical micellar growth was depressed with increasing spacer chain length, whereas it was enhanced with increasing tail chain length. The degree of micelle ionization of spherocylindrical micelles depended on the concentration and chain length of gemini surfactants. The change in SPQ fluorescence spectra upon hydrogenation was utilized to evaluate the solubilization site in micelle solutions. The dissolved SPQ in water was instantly reduced by the addition of NaBH4, resulting in abrupt changes in fluorescence intensity and spectral shift. All of the SPQ in micelle solution was also instantly reduced by NaBH4, indicating the existence of SPQ in the water bulk phase, but its fluorescence intensity increased upon the solubilization of hydrogenated SPQ into micelles.     

Effects of polydisperse crowders on aggregation reactions: a molecular thermodynamic analysis

Intracellular crowding in biological systems is usually mimicked in in vitro experiments by adding single crowders at high volume fractions, without taking into consideration the polydispersity of the crowders in the cellular environment. Here, we develop a molecular thermodynamic formalism to examine the effects of size-polydispersity of crowders on aggregation reaction equilibria. Although the predominantly common practice so far has been to appeal to the entropic (excluded-volume) effects in describing crowding effects, we show that the internal energy (hence, the enthalpy) of the system could dramatically alter the effects, even qualitatively, particularly in the case of a mixture of crowders, depending on the changes in the covolume of the products relative to that of the reactants and on the preferential binding or exclusion of the crowders by the reactants and products. We also show that in the case of polydisperse crowders the crowders with the largest size difference dominate the overall changes in the yield of the reaction, depending on the individual concentrations of the crowders.     

Glassy dynamics and mechanical response in dense fluids of soft repulsive spheres. I. Activated relaxation, kinetic vitrification, and fragility

The microscopic nonlinear Langevin equation theory of activated glassy dynamics is applied to dense fluids of spherical particles that interact via a finite range Hertzian contact soft repulsion. The activation barrier and mean alpha relaxation time are predicted to be rich functions of volume fraction and particle stiffness, exhibiting a non-monotonic variation with concentration at high volume fractions. The latter is due to a structural "soft jamming" crossover where the real space local cage order weakens when soft particles significantly overlap. The highly variable dependences of the relaxation time on temperature and volume fraction are reasonably well collapsed onto two distinct master curves that are qualitatively consistent with a recent scaling ansatz and computer simulation study. A kinetic vitrification diagram is constructed and compared to its dynamic crossover analog. Intersection of the dynamic crossover and soft jamming threshold boundaries occurs for particles that are sufficiently soft, implying the nonexistence of a clear activated dynamics regime or kinetic arrest transition for such particles. The isothermal dynamic fragility is predicted to vary over a wide range as a function of particle stiffness, and soft particles behave as strong glasses. Qualitative comparisons with simulations and microgel experiments reveal good agreement.     

Anomalous and Normal Diffusion of Tracers in Crowded Environments: E ect of Size Disparity between Tracer and Crowders

The dynamics of tracers in crowded matrix is of interest in various areas of physics, such as the diffusion of proteins in living cells. By using two-dimensional (2D) Langevin dynamics simulations, we investigate the diffusive properties of a tracer of a diameter in crowded environments caused by randomly distributed crowders of a diameter. Results show that the emergence of subdiffusion of a tracer at intermediate time scales depends on the size ratio of the tracer to crowders δ. If δ falls between a lower critical size ratio and a upper one, the anomalous diffusion occurs purely due to the molecular crowding. Further analysis indicates that the physical origin of subdiffusion is the "cage effect". Moreover, the subdiffusion exponent α decreases with the increasing medium viscosity and the degree of crowding, and gets a minimum αmin=0.75 at δ=1. At long time scales, normal diffusion of a tracer is recovered. For δ≤1, the relative mobility of tracers is independent of the degree of crowding. Meanwhile, it is sensitive to the degree of crowding for δ>1. Our results are helpful in deepening the understanding of the diffusive properties of biomacromolecules that lie within crowded intracellular environments, such as proteins, DNA and ribosomes.     

Structural Refolding and Thermal Stability of Myoglobin in the Presence of Mixture of Crowders: Importance of Various Interactions for Protein Stabilization in Crowded Conditions

The intracellular environment is overcrowded with a range of molecules (small and large), all of which influence protein conformation. As a result, understanding how proteins fold and stay functional in such crowded conditions is essential. Several in vitro experiments have looked into the effects of macromolecular crowding on different proteins. However, there are hardly any reports regarding small molecular crowders used alone and in mixtures to observe their effects on the structure and stability of the proteins, which mimics of the cellular conditions. Here we investigate the effect of different mixtures of crowders, ethylene glycol (EG) and its polymer polyethylene glycol (PEG 400 Da) on the structural and thermal stability of myoglobin (Mb). Our results show that monomer (EG) has no significant effect on the structure of Mb, while the polymer disrupts its structure and decreases its stability. Conversely, the additive effect of crowders showed structural refolding of the protein to some extent. Moreover, the calorimetric binding studies of the protein showed very weak interactions with the mixture of crowders. Usually, we can assume that soft interactions induce structural perturbations while exclusion volume effects stabilize the protein structure; therefore, we hypothesize that under in vivo crowded conditions, both phenomena occur and maintain the stability and function of proteins.     

Effect of free volume and temperature on the structural relaxation in polymethylphenylsiloxane: a positron lifetime and pressure-volume-temperature study

The microstructure of the free volume and its temperature dependence in polymethylphenylsiloxane (PMPS) have been examined using positron annihilation lifetime spectroscopy (PALS) and pressure-volume-temperature experiments. The hole-free volume fraction h and the specific hole-free and occupied volumes, Vf=hV and Vocc=(1-h)V, were estimated employing the Simha-Somcynsky (SS) lattice-hole theory. From the PALS spectra analyzed with the new routine LT9.0 the hole size distribution, its mean, , and mean dispersion, sigmah, were calculated. A comparison of with V and Vf delivered a constant specific hole number Nh'. Using a fluctuation approach the temperature dependency of the volume of the smallest representative freely fluctuating subsystem, , is estimated to vary from approximately 8.5 nm3 at Tg to approximately 3 nm3 at T/Tg>or=1.15. Unlike other polymers, the segmental relaxation from dielectric spectroscopy of PMPS follows the Cohen-Turnbull free volume theory almost perfectly in the temperature and pressure ranges between 243 and 279 K and 0 and approximately 100 MPa. This behavior correlates with the small mass of the SS lattice mer which indicates the high flexibility of the PMPS chain. Above 293 K and approximately 150 MPa, the free volume prediction gives relaxation times that are too small, which indicates that effects of thermal energy must be included in the analysis. To quantify the degree to which volume and thermal energy govern the structural dynamics the ratio of the activation enthalpies, Ei=R[(d ln taudT1)]i (tau-relaxation time of alpha relaxation), at constant volume V and constant pressure P, EV/EP, is frequently determined. The authors present arguments for necessity to substitute EV with EVf, the activation enthalpy at constant (hole) free volume, and show that EVf/EP changes as expected: increasing with increasing free volume, i.e., with increasing temperature and decreasing pressure. EVf/EP (=0.04-0.1) exhibits remarkably smaller values than EV/EP (=0.44-0.53), which leads to the inference that the free volume plays a distinctly larger role in dynamics than traditionally concluded from EV/EP. This conclusion is in agreement with the results of our more direct Cohen-Turnbull free volume analysis.     

Dissipative particle dynamics study on the interfaces in incompatible A/B homopolymer blends and with their block copolymers

Dissipative particle dynamics, a simulation technique appropriate at mesoscopic scales, has been applied to investigate the interfaces in immiscible binary A/B homopolymer blends and in the ternary systems with their block copolymers. For the binary blends, the interfacial tension increases and the interface thickness decreases with increasing Flory-Huggins interaction parameter chi while the homopolymer chain length is fixed. However, when the chi parameter and one of the homopolymer chain length is fixed, increasing another homopolymer chain length will induce only a small increase on interfacial tension and slight decrease on interface thickness. For the ternary blends, adding the A-b-B block copolymer will reduce the interfacial tension. When the mole number of the block copolymer is fixed, longer block chains have higher efficiency on reducing the interfacial tension than the shorter ones. But for the block copolymers with fixed volume fraction, shorter chains will be more efficient than the longer ones on reducing the interfacial tension. Increasing the block copolymer concentration reduces interfacial tension. This effect is more prominent for shorter block copolymer chains.     

Electrical conductance,density, and viscosity of the molten system lead(II) dodecanoate/lead(II) oxide

Data are presented for densities, electrical conductances, and viscosities of the molten system lead(II) dodecanoate/lead(II) oxide concentrations up to 0.22 mole fraction of the oxide. Values of ?₀ obtained from extrapolation of graphs of density againts temperature are seen to decrease on adding small quantities of PbO, but to increase on adding further PbO. Results from thermal analysis suggest that this may be due to a change in structure of the liquid phase from small. spherical to long, cylindrical micelles. Over the concentration range studied, molar volumes are linear functions of concentration at any particular temperature. The molar volumes of the system lead(II) carboxylate/lead(II) oxide for the even chain acids C₁₀ to C₁₈ are linear functions of chain length. Arrhenius plots for the electrical conductance of the mixtures show curvature, as in other lead(II) dodecanoate systems. The activation energies for conductance in the low temperature region show a steady decrease with increasing PbO concentration and it is proposed that this arises from increased mobility of the charge carrier. The specific conductance at any temperature decreases with increasing mole fraction of oxide, indicating the oxide to be essentially undissociated in the melt. The activation energy for viscosity shows a dramatic increase on adding small amounts of PbO. This is suggested to arise from a change in the structure of the melt. Studies of the viscosities of the system lead(II) carboxylate/lead oxide as a function of chain length for the even chain acids C₁₀ to C₁₈ suggest a slight decrease in the size of the unit of viscous flow when oxide is present.     

Activated hopping and dynamical fluctuation effects in hard sphere suspensions and fluids

Single particle Brownian dynamics simulation methods are employed to establish the full trajectory level predictions of our nonlinear stochastic Langevin equation theory of activated hopping dynamics in glassy hard sphere suspensions and fluids. The consequences of thermal noise driven mobility fluctuations associated with the barrier hopping process are determined for various ensemble-averaged properties and their distributions. The predicted mean square displacements show classic signatures of transient trapping and anomalous diffusion on intermediate time and length scales. A crossover to a stronger volume fraction dependence of the apparent nondiffusive exponent occurs when the entropic barrier is of order the thermal energy. The volume fraction dependences of various mean relaxation times and rates can be fitted by empirical critical power laws with parameters consistent with ideal mode-coupling theory. However, the results of our divergence-free theory are largely a consequence of activated dynamics. The experimentally measurable alpha relaxation time is found to be very similar to the theoretically defined mean reaction time for escape from the barrier-dominated regime. Various measures of decoupling have been studied. For fluid states with small or nonexistent barriers, relaxation times obey a simple log-normal distribution, while for high volume fractions the relaxation time distributions become Poissonian. The product of the self-diffusion constant and mean alpha relaxation time increases roughly as a logarithmic function of the alpha relaxation time. The cage scale incoherent dynamic structure factor exhibits nonexponential decay with a modest degree of stretching. A nearly universal collapse of the different volume fraction results occurs if time is scaled by the mean alpha relaxation time. Hence, time-volume fraction superposition holds quite well, despite the presence of stretching and volume fraction dependent decoupling associated with the stochastic barrier hopping process. The relevance of other origins of dynamic heterogeneity (e.g., mesoscopic domains), and comparison of our results with experiments, simulations, and alternative theories, is discussed.     

Three-dimensional Brownian diffusion of rod-like macromolecules in the presence of randomly distributed spherical obstacles: molecular dynamics simulation

Brownian diffusion of rod-like polymers in the presence of randomly distributed spherical obstacles is studied using molecular dynamics simulations. It is observed that dependence of the reduced diffusion coefficient of these macromolecules on the available volume fraction can be described reasonably by a power law function. Despite the case of obstructed diffusion of flexible polymers in which reduced diffusion coefficient has a weak dependence on the polymer length, this dependence is noticeably strong in the case of rod-like polymers. Diffusion of these macromolecules in the presence of obstacles is observed that is anomalous at short time scales and normal at long times. Duration time of the anomalous diffusion regime is found that increases very rapidly with increasing both the polymer length and the obstructed volume fraction. Dynamics of diffusion of these polymers is observed that crosses over from Rouse to reptation type with increasing the density of obstacles.     

Isotropic-nematic spinodals of rigid long thin rodlike colloids by event-driven Brownian dynamics simulations

The isotropic-nematic spinodals of solutions of rigid spherocylindrical colloids with various shape anisotropies L/D in a wide range from 10 to 60 are investigated by means of Brownian dynamics simulations. To make these simulations feasible, we developed a new event-driven algorithm that takes the excluded volume interactions between particles into account as instantaneous collisions, but neglects the hydrodynamic interactions. This algorithm is applied to dense systems of highly elongated rods and proves to be efficient. The calculated isotropic-nematic spinodals lie between the previously established binodals in the phase diagram and extrapolate for infinitely long rods to Onsager's [Ann. N. Y. Acad. Sci. 51, 627 (1949)] theoretical predictions. Moreover, we investigate the shear induced shifts of the spinodals, qualitatively confirming the theoretical prediction of the critical shear rate at which the two spinodals merge and the isotropic-nematic phase transition ceases to exist.     

Natural convection of hybrid nanofluid heat transport and entropy generation in cavity by using Lattice Boltzmann Method

A mesoscopic study of natural convection due to MWCNT-Fe₃O₄/Water hybrid nanofluid is conducted utilizing the Lattice Boltzmann Method. The test fluid is filled in a differentially heated rectangular enclosure. Effects of aspect ratio in the range of 0.5–2.0, Rayleigh number varying from 10³ to 10⁵ and nanocomposite volume fraction on heat and fluid flow characteristics and entropy generation have been illustrated. It is observed that the mean Nusselt number rises with the increase in Rayleigh number, while it falls as the aspect ratio increases. However, the mean Nusselt number enhances with the increase in MWCNT-Fe₃O₄ volume fraction up to 0.001. On further increasing the volume fraction, the mean Nusselt number shows either no significant rise or deterioration for the case of MWCNT-Fe₃O₄ nanocomposite. The dimensionless entropy generation number rises with the increase in the Rayleigh number. However, it falls with an increase in aspect ratio and dimensionless temperature difference. Interestingly in the case of increasing nanoparticle loading fraction, entropy generation number augments first, attains a maximum at 0.001 ?vol fraction of nanocomposite, and then it decreases. Nevertheless, at the low Rayleigh number, it keeps on rising with an increase in nanocomposite volume fraction. The best thermal performance is obtained for the cavity of 0.5 aspect ratio. A correlation for the mean Nusselt number is proposed.     

Stochastic entangled chain dynamics of dense polymer solutions

We propose an adjustable-parameter-free, entangled chain dynamics model of dense polymer solutions. The model includes the self-consistent dynamics of molecular chains and solvent by describing the former via coarse-grained polymer dynamics that incorporate hydrodynamic interaction effects, and the latter via the forced Stokes equation. Real chain elasticity is modeled via the inclusion of a Pincus regime in the polymer's force-extension curve. Excluded volume effects are taken into account via the combined action of coarse-grained intermolecular potentials and explicit geometric tracking of chain entanglements. We demonstrate that entanglements are responsible for a new (compared to phantom chain dynamics), slow relaxation mode whose characteristic time scale agrees very well with experiment. Similarly good agreement between theory and experiment is also obtained for the equilibrium chain size. We develop methods for the solution of the model in periodic flow domains and apply them to the computation of entangled polymer solutions in equilibrium. We show that the number of entanglements Π agrees well with the number of entanglements expected on the basis of tube theory, satisfactorily reproducing the latter's scaling of Π with the polymer volume fraction φ. Our model predicts diminishing chain size with concentration, thus vindicating Flory's suggestion of excluded volume effects screening in dense solutions. The predicted scaling of chain size with φ is consistent with the heuristic, Flory theory based value.     

Monte Carlo simulation study of the kinetics of brush formation by irreversible adsorption of telechelic polymers onto a solid substrate

The irreversible adsorption of telechelic polymer chains from solution and melts onto solid substrates has been studied using the bond fluctuation Monte Carlo model. Complex brush formation kinetics dominated by diffusion of chains to the substrate at short times (diffusion-limited regime or DLR) and by penetration of chains through the maturing brush at longer times (penetration-limited regime or PLR) were observed. During the entire adsorption process, the rate of chain adsorption decreases monotonically with time. In the DLR, characterized by a maximum in the concentration of singly bound chains and a rapidly increasing fraction of doubly bound chains (loops), this decrease is due primarily to the depletion of free chains near the substrate and the formation of concentration gradients of free (nonadsorbed) chains in the bulk solution. The DLR and PLR are separated by an intermediate regime during which the brush becomes dominated by doubly bound chains and both penetration of the maturing brush and diffusion of chains to the brush surface play a role in determining the kinetics of brush growth. The PLR is characterized by steep gradients of free chains within the growing brush and the disappearance of concentration gradients for free chains in the bulk solution. In the PLR, the concentration of singly bound chains is low and decreases slowly while surface coverage and the fraction of doubly bound chains increase slowly. The rates of adsorption of new chains and the formation of loops in the PLR slow dramatically with increasing surface coverage and increasing chain length and less dramatically with decreasing bulk concentration.     

Strong Inhibition of Ice Growth by Biomimetic Crowding Coacervates

The freezing of biological fluids is intensively studied but remains elusive as it is affected not only by the various components but also by the crowding nature of the biological fluids. Herein, we constructed spherical crowders, fibrous crowders, and coacervates by various components ranging from surfactants to polymers and proteins, to mimic three typical crowders in biological fluids, i.e., globular proteins, fibrous networks, and condensates of biomolecules. It is elucidated that the three crowders exhibit low, moderate, and strong ice growth inhibition activity, respectively, resulting from their different abilities in slowing down water dynamics. Intriguingly, the coacervate consisting of molecules without obvious ice growth inhibition activity strongly inhibits ice growth, which is firstly employed as a highly-potent cryoprotectant. This work provides new insights into the survival of freezing-tolerant organisms and opens an avenue for the design of ice-controlling materials.     

Adsorption-driven translocation of polymer chain into nanopores

The polymer translocation into nanopores is generally facilitated by external driving forces, such as electric or hydrodynamic fields, to compensate for entropic restrictions imposed by the confinement. We investigate the dynamics of translocation driven by polymer adsorption to the confining walls that is relevant to chromatographic separation of macromolecules. By using the self-consistent field theory, we study the passage of a chain trough a small opening from cis to trans compartments of spherical shape with adsorption potential applied in the trans compartment. The chain transfer is modeled as the Fokker-Plank diffusion along the free energy landscape of the translocation pass represented as a sum of the free energies of cis and trans parts of the chain tethered to the pore opening. We investigate how the chain length, the size of trans compartment, the magnitude of adsorption potential, and the extent of excluded volume interactions affect the translocation time and its distribution. Interplay of these factors brings about a variety of different translocation regimes. We show that excluded volume interactions within a certain range of adsorption potentials can cause a local minimum on the free energy landscape, which is absent for ideal chains. The adsorption potential always leads to the decrease of the free energy barrier, increasing the probability of successful translocation. However, the translocation time depends non-monotonically of the magnitude of adsorption potential. Our calculations predict the existence of the critical magnitude of adsorption potential, which separates favorable and unfavorable regimes of translocation.