Deuterated Disaccharides for the Investigation of Protein-Carbohydrate Interactions-Application of Bioaffinity-and STD-NMR

ABSTRACT

NMR spectroscopic analysis of carbohydrates often suffers from severe overlap of resonance signals, especially in ¹H NMR spectra. Therefore, we synthesized four 2,3,4-trideuterio-α-L-fucose containing disaccharides, α-L-Fuc-(1→6)-β-D-GlcNAc-OMe 1, α-L-Fuc-(1→4)-β-D-GlcNAc-OMe 2, α-L-Fuc-(1→3)-β-D-GlcNAc-OMe 3, and α-L-Fuc-(1→2)-β-D-Gal-OMe 4. Compounds 1 to 4 are well suited to be subjected to NMR conformational analysis because their ¹H NMR spectra show almost no overlap of signals. The deuterated disaccharides 1 to 4 will therefore be used as NMR probes for the exploration of fucose-binding proteins. With a mixture of the corresponding non-deuterated disaccharides it is demonstrated that recently developed parallel NMR screening protocols, Bio-Affinity NMR and STD-NMR, deliver fast and robust tools to assay the compounds synthesized for protein-binding affinity.     

Determination of a new chromone from Aurantii Fructus Immaturus by DFT/GIAO method

Investigation of EtOAc fraction from the 95% ethanol extract of Aurantii Fructus Immaturus led to the isolation of one new chromone (1) and seven known flavonoids (2–8). Their structures were elucidated mainly by NMR and HR-ESI-MS, as well as on comparison with the reported NMR data. The final substituent pattern of 1 was defined by comparison of ¹³C NMR data calculated by DFT/GIAO with those of experimental NMR data.     

酰基硫脲衍生物的合成、结构表征及生物活性研究

在超声波辐射下, 以PEG-400为固-液相转移催化剂, 用芳胺与双酰基异硫氰酸酯反应, 合成出了15种新的结构不对称的双酰基硫脲类化合物(6和6')和9种新的分子中含酰胺基团的单酰基硫脲类化合物(7和7'). 利用元素分析, IR, ¹H NMR, ¹³C NMR, APT, 1D NOE及2D NMR技术确定了所合成化合物6和6'及7和7'的结构, 并对它们NMR谱中低场C, H进行了归属. 杀菌、杀虫和除草活性筛选测定实验结果表明, 所测试化合物对瓜炭疽病菌均具有抑制作用, 其中6e抑制率最高, 达到62.4%; 目标化合物7a对黄瓜白粉病菌有一定的抑制作用. 单胺氧化酶活性测定实验表明：大部分目标化合物对单胺氧化酶具有一定的抑制活性, 其中浓度在1×10^－3 mol•L^－1时目标化合物6'c和6'd的抑制活性较强, 明显高于其它化合物. 目标化合物没有抗惊厥活性.     

Antifungal activity against Botrytis cinerea of labdane-type diterpenoids isolated from the resinous exudate of Haplopappus velutinus Remy (Asteraceae)

Two labdane diterpenoids were isolated, from the resinous exudate of Haplopappus velutinus Remy (Asteraceae); the main compound was identified as 7,13-(E)-labdadien-15,18-dioic-acid-18-methyl ester (1) and the minor compound identified as 7-labden-15,18-dioic-acid-18-methyl ester (2). Their structures were obtained using FTIR, MS, HRMS and NMR data: 1D NMR (¹H, ¹³C and DEPT-135), 2D homonuclear NMR (COSY and NOESY) and heteronuclear NMR (HSQC and HMBC). The trans stereochemistry of the decalin moiety of compounds 1 and 2 was established through NOESY experiments of the reduction product of 1; 7-labden-15,18-diol (1a). Diterpenoids 1 and 1a are described for the first time and showed antifungal activity, inhibiting approximately 40% mycelial growth of Botrytis cinerea.     

Flavone C-glycosides from Trichuriella monsoniae (L.f.) Bennet

In the first phytochemical investigation of Trichuriella monsoniae, three known flavonoidal C-glycosides, isoswertisin 1, 2″-O-β-d-galactosyl isoswertisin 2 and 2″-O-β-d-xylosyl isoswertisin 3 were isolated from the methanolic extract of the whole plant. Their structures were elucidated by extensive NMR spectroscopic studies including 2D NMR and HRMS, and the structure of 2 was supported by single crystal X-ray data studies. Further, NMR assignments for 3 are being reported for the first time.     

CONFORMATION OF EIGHT-MEMBERED DIOXATHIASILOCIN HETEROCYCLES IN SOLUTION

Abstract

The dibenzo[d,g][1,3,6,2]dioxathiasilocin derivatives 3a-f were prepared by the reaction of the thiobisphenols 1a-b with the corresponding dichlorosilanes 2a-e using triethylamine as an acid acceptor. The free energy of activation for ring inversion of the 2,4,8,10-tetra-tert-butyl-substituted 3a was determined by variable temperature ¹H NMR to be 13.9 kcal/mol. The ¹H NMR spectral data of 3a requires that the ring conformer possess a σ plane of symmetry passing through the silicon and bridging sulfur atoms. In the variable temperature ¹H NMR spectra of the 2,4,8,10-tetramethyl-substituted 3b no evidence was observed for the slowing of ring inversion at-55^oC, suggesting that the energy of activation for ring inversion is less than 10.9 kcal/mol. The ¹H NMR spectral data of 3e-f indicates the presence of equilibrating conformational isomers. The results of this study supports the suggestion that steric factors are a major contributor to the barrier of ring inversion for the dibenzo-[d, g][1,3,6,2]dioxathiasilocin ring system.     

Synthesis,structure, and NMR spectra of a new ferrocenylbenzene tricarbonylchromium complex

Complex 1 (1,2,4-triferrocenylbenzene tricarbonylchromium), possessing four heterometals, has been synthesized efficiently by a new method in one pot. Through detailed study on the NMR chemical shifts of 1 and the ligand 2, the NMR chemical shifts of 1 shift upfield from those of 2. The NMR spectra of 1 have reduced magnetic anisotropy of benzene after Cr(CO)₃ coordination with 2. The ferrocenyl groups have electron donating effect on the central benzene ring of 1.     

Trimethylsilylation - Aid in NMR Analysis of Oligosaccharides. Assigment of 29Si and 13C NMR Spectra of Trimethylsilylated Methyl β-D-Xylobiosides by 2D NMR

The ¹H, ¹³C and ²⁹Si NMR spectra of methyl β-D-xylopyranoside and three methyl β-D-xylopyranosyl-β-D-xylopyranosides have been measured and assigned by two-dimensional NMR spectroscopy. According to the determined proton-proton coupling constants, the ring conformer ratio is essential ly the same in the studied compounds. The assigned chemical shifts provide correct substituent chemical shifts for assignments in the spectra of higher trimethylsilylated xylooligosaccharides. Heteronuclear chemical shift correlated 2D NMR spectroscopy is proven to be a usable experimental method for ²⁹Si NMR line assignment in carbohydrates. The assigned silicon shifts identify the site of glycosidation.     

A new anthraquinone and eight constituents from Hedyotis caudatifolia Merr. et Metcalf: isolation,purification and structural identification

Hedyotis caudatifolia Merr. et Metcalf. (HC), a folk medicine in Yao nationalities areas in China, was used to investigate the chemical constituents. Through silica gel and Sephadex LH-20 column chromatography, nine compounds were isolated and purified. By physical and chemical properties, IR, MS (EI-MS, high resolution EI-MS), 1D NMR (¹H NMR, ¹³C NMR) and 2D NMR (HSQC, ¹H–¹H COSY, HMBC), their structures were identified as β-sitosterol (1), stigmasterol (2), scopolin (3), 2-hydroxy-1,7,8-trimethoxyanthracene-9,10-dione (4), oleanolic acid (5), ursolic acid (6), methyl barbinervate (7), β-daucosterol (8) and p-Hydroxybenzoic acid (9). These compounds were isolated from HC for the first time, and 4 a new anthraquinone whose biological activities are worth to be investigated in future. These compounds may contribute to the HC’s pharmacological effects on treating diseases, and may be used as candidates for control index in establishing the quality control standard of HC.     

玉米须中的一个新黄酮和两个尿素苷

玉米须是我国传统中药, 具有多种生物活性. 为了寻找玉米须中的生物活性成分, 对玉米须的化学成分进行了研究, 从中分离得到一个新黄酮1和两个尿素苷2和3. 应用多种波谱学方法(¹H NMR, ¹³C NMR, HSQC, HMBC, ¹H-¹H COSY, ESI-MS等), 确定了3个化合物的化学结构. 化合物1为新化合物, 鉴定为6-乙酰基-木犀草素; 化合物2和3是两个新的天然产物, 分别鉴定为鼠李糖尿素苷和1,3-二鼠李糖尿素苷. 首次对两个新天然产物的氢谱和碳谱数据进行了全归属.     

含氨基酸单元的手性主体的合成及手性识别研究

以L-丙氨酸和2,7-二萘酚为原料通过简单的方法合成了二种带有荧光基团萘的手性阴离子主体(1和2), 用红外光谱、质谱、元素分析、核磁共振氢谱及碳谱表征了它们的结构. 用荧光光谱及核磁共振氢谱研究了主体与二苯甲酰酒石酸阴离子的相互作用, 结果表明1, 2与D-或L-二苯甲酰酒石酸阴离子均形成1∶1的配合物, 主体1展现出良好的对二苯甲酰酒石酸阴离子对映选择性识别能力.     

Synthesis of Novel Chalcone Analogues of Ferrocene Biarenes

Abstract

The novel structures of organometallic compounds, 1-biaryl-3-ferrocenyl-2-propene-1-one (5) and 3-biaryl-1-ferrocenyl-2-propene-1-one (9) were synthesized for nonlinear optical chromophores by Suzuki cross-coupling reaction. Their structures were determined with elemental analyses, IR spectra, ¹H NMR spectra, and ¹³C NMR spectra.     

Spectral Assignment of Phenanthrene Derivatives Based on 6H-Dibenzo[C,E][1,2] Oxaphosphinine 6-Oxide by NMR and Quantum Chemical Calculations

Abstract

Organophosphorus compounds such as 6H-dibenzo[c,e][1,2]oxaphosphinine 6-oxide (DOPO, 1) and its derivatives are important and versatile compounds for a broad field of applications. However, a thorough spectral assignment is often subordinate to its chemical properties. This article presents and unambiguously attributes the ¹H and ¹³C NMR spectra of DOPO (1), selected products yielded from the Atherton–Todd reaction (2–4), DOPO-HQ (5) as well as sulfur derivatives (6–7) via a set of 1D- and 2D-NMR experiments. The complex P-C and P-H coupling patterns are discussed and compared with the derivatives possessing different chemical environments around the phosphorus atom. In addition, we compared our results with density functional theory calculations. Even though the prediction of NMR data of organophosphorus compounds via molecular modeling is limited, this study presents a method that yields good results for this class of heterocycles. This knowledge should help to quickly assign NMR spectroscopic data of other DOPO (1) derivatives and can be extrapolated to organophosphorus compounds in general.

Supplemental materials are available for this article. Go to the publisher's online edition of Phosphorus, Sulfur, and Silicon and the Related Elements for the following free supplemental resource: NMR Spectra of Compounds 1-7 (Figures S1 - S15).     

Chiral recognition in NMR spectroscopy using crown ethers and their ytterbium(III) complexes

Chiral crown ethers 1 and 5 are useful enantiomeric discriminating agents in ¹H NMR spectroscopy for neutral and protonated primary amines, amino acids, and amino alcohols. The presence of the carboxylic acid groups in 1 and 5 provide sites at which ytterbium(III) can bind. Adding ytterbium(III) nitrate to crown–substrate mixtures in methanol-d₄ causes shifts in the spectra of substrates and often enhances the chiral discrimination in the ¹H NMR spectrum. The enhancement in enantiomeric discrimination that occurs in the presence of ytterbium(III) allows lower concentrations of the crown ether to be used in chiral recognition studies. Several amide derivatives of 1 were prepared and evaluated as chiral NMR discriminating agents, although except for 1e, these were less effective than 1.     

Isolation and characterisation of three new anthraquinone secondary metabolites from Symplocos racemosa

Three new anthraquinone secondary metabolites were isolated from Symplocos racemosa, a small tree of family symplocaceae. The structures of compounds (1–3) were elucidated to be 1,4-dihydroxy-6-(ethoxymethyl)-8-propylanthracene-9,10-dione (1), 1,4-dihydroxy-6-(hydroxymethyl)-8-butylanthracene-9,10-dione (2) and 1,4-dihydroxy-6-(hydroxymethyl)-8-propyl anthracene-9,10-dione (3) using their spectral data, i.e. through IR, UV, ¹H NMR, ¹³C NMR and two-dimensional (2D) NMR techniques including heteronuclear multiple quantum coherence, heteronuclear multiple bond correlation and correlation spectroscopy.     

Tris(dimethylamino)phosphine Selenide Complexes of Cadmium(II): Synthesis and Multinuclear (31P, 77Se,and 113Cd) NMR Characterization in Solution

The complexes CdL₄(ClO₄)₂ (1), CdL₂(NO₃)₂ (2), and CdL₂Cl₂ (3) (L = (Me₂N)₃P(Se)) have been prepared and characterized by elemental analysis, conductivity measurements, IR, and multinuclear (³¹P, ⁷⁷Se, and ¹¹³Cd) NMR spectroscopy. ³¹P and ⁷⁷Se NMR data were informative of changes associated with complex formation. The structure of the prepared complexes was further confirmed in solution by their ¹¹³Cd NMR spectra, which show a quintuplet for the perchlorate complex and a triplet for each of the nitrate and chloride complexes due, respectively, to coupling with four and two equivalent phosphorus atoms, consistent with a four coordinate tetrahedral geometry for the cadmium center. The NMR data are discussed and compared with those reported for related complexes.     

Nepetadiol,a new triterpenediol from <Emphasis Type="Italic">Nepeta suavis</Emphasis>

Nepetadiol, a new tetracyclic triterpene diol (1), was isolated from the chloroform-soluble portion of the whole plant of Nepeta suavis. In addition, lawsonin (2) and lawsonic acid (3) have been isolated for the first time from this species. The structures of the isolated compounds were based on ¹H and ¹³C NMR spectra, including two-dimensional NMR techniques like COSY, HMQC, and HMBC, and comparison with the literature data.     

Novel thermoresponsive water-soluble oligomers based on amphiphilic calixresorcinarenes

Novel water-soluble thermoresponsive oligomers TO1 and TO2 were obtained by reaction of amidoamine tetramethylcalixresorcinarenes (C1) and tetrapentylcalixresorcinarenes (C5) with ethylene glycol diglycidyl ether. The compounds were characterised by ¹H and FT-PGSE NMR, FTIR, static light scattering and elemental analysis. The thermoresponsive properties of oligomers were investigated by spectrophotometry, DLS, FT-PGSE NMR and TEM. The cloud points of oligomers (43 °C for TO1 (5 mg/ml) and 41 °C for TO2 (1.2 mg/ml), respectively) were determined. The influence of salts effect on TO2 cloud points was investigated. The binding of anti-inflammatory drug naproxen (Nap) at 20 °C by TO1 and TO2 and its partial release at cloud points of oligomers in aqueous solution are observed using fluorescence and FT-PGSE NMR methods. New example of creating of thermoresponsive macrocyclic systems on the basis of amidoamine calixresorcinarenes with possibility of substrate binding and release under the influence of termo-stimuli in an aqueous solution was shown.     

Synthesis,NMR, and Computational Study of 1,2-Diethyl-3-(trimethylsilyl)cyclopropenylium Hexachloroantimonate

Preparation and ¹³C NMR identification of 1,2-diethyl-3-(trimethylsilyl)cyclopropenylium hexachloroantimonate (4) is described. The assignment of the NMR data was corroborated by calculating ¹³C NMR chemical shifts of the corresponding model ion 4M. The total stabilization of the parent cyclopropenylium ion 1 substituted by the silyl and the two methyl groups is found to be only slightly lower than stabilization of the trimethyl derivative. The computed NICS(1) parameters reveal that all of the examined ions possess substantial aromatic character.     

4'-磺酰腙苯并-15-冠-5的合成及阴离子识别研究

由苯并-15-冠-5经磺酰化、肼解两步合成了4'-磺酰肼苯并-15-冠-5 (2). 后者与芳香醛在室温下发生缩合制得了一系列未见文献报道的冠醚化磺酰腙类化合物3a～3h, 产物经元素分析, IR, ¹H NMR, ¹³C NMR, MS确证了其结构. 利用紫外－可见吸收光谱考查了其对不同阴离子的识别作用, 结果表明, 化合物3d, 3e, 3h对碱性较强的阴离子有较强的选择性识别作用.