Thermal stabilization of tissues and the preservation of protein phosphorylation states for two‐dimensional gel electrophoresis

2‐DE is typically capable of discriminating proteins differing by a single phosphorylation or dephosphorylation event. However, a reliable representation of protein phosphorylation states as they occur in vivo requires that both phosphatases and kinases are rapidly and completely inactivated. Thermal stabilization of mouse cerebral cortex homogenates effectively inactivated these enzymes, as evidenced by comparison with unstabilized tissues where abscissal pI shifts were a common feature in 2‐D gels. Of the 588 matched proteins separated on 2‐D gels comparing stabilized and unstabilized tissues, 53 proteins exhibited greater than twofold differences in spot volume (ANOVA, p<0.05). Phosphoprotein‐specific staining was corroborated by the identification of 16 phosphoproteins by nano‐LC MS/MS and phosphotyrosine kinase activity assay.     

单猪屎豆碱的2D NMR

H、13C和DEPT及2DNMR(gCOSY、NOESY、gHSQC和gHMBC)方法,进一步对单猪屎豆碱的核磁共振谱进行了全归属。     

环肽配糖体的二维核磁共振谱研究

用600MHz超导核磁共振仪测定了两个具有抗癌活性环肽配糖体RY-2和RY-3的TOCSY, HMQC, HMBC和ROESY谱图, 并正确地对分子RY-2和RY-3的氢谱和碳谱进行了归属。同时订正分子RY-3中糖的连接位置。     

A simple approach for phase-modulated single-scan 2D NMR spectroscopy

Conventional NMR spectroscopy techniques require long acquisition times due to the recovery time between the repeated excitations necessary for each increment of the evolution times in the indirectly detected dimensions. Here we outline a pulse sequence element for gradient-assisted ultrafast multidimensional NMR spectroscopy using frequency-modulated 'chirp' pulses to generate phase-modulated magnetization in an indirectly detected spectral dimension. The potential of this sequence element is demonstrated by acquiring a correlation spectroscopy (COSY) spectrum in 96 ms. This new pulse sequence element is an extension of ultrafast spectroscopy techniques based on the generation of amplitude modulation of the NMR signal in the indirectly detected spectral dimensions. The use of phase modulation instead of amplitude modulation helps broaden the applicability and may provide an increase of sensitivity in some experiments due to the ability to distinguish between positive and negative frequency offsets relative to the carrier frequency of the sequence element.     

Automatic phase correction of 2D NMR spectra by a whitening method

A new method for the automatic phase correction of multidimensional NMR spectra is described. It is based on the whitening concept formulated as the ‘maximization of the number of white pixels into a bitmap that corresponds to the spectrum’. This process of maximization can be factorized along the individual axes of the spectrum and this property makes the method robust and fast. It employs a statistic measure based on a large number of spectral data points and, for this reason, is very tolerant to low signal‐to‐noise ratio (SNR) and local artifacts. The algorithm can efficiently phase either homonuclear or heteronuclear experiments and, unlike other previous methods, it can also process automatically spectra containing positive or negative peaks so that it is not necessary to deal with individual or special cases Copyright © 2009 John Wiley & Sons, Ltd.     

Quantitative determination of aliphatic hydrocarbon compounds by 2D NMR

Quantitative analysis of complex mixtures by NMR is often hampered by heavily overlapping signals in 1D ¹H or ¹³C spectra. To resolve the overlap problem, we have been looking at the possibilities of using heteronuclear correlated 2D NMR methods for quantification. In this work, we applied 2D INEPT to analyze mixtures of tetradecane and squalane, which represent typical substructures of lube oil fractions. The factors affecting correlation peak volumes, namely the polarization transfer delays within pulse sequence, multiplicity of CH_n group and the magnitude of ¹J_{(C, H)} couplings were taken into account by product operator formalism calculations. The results indicate that if absolute precision in quantification is not essential, the current approach can be used for the quantitative analysis of the molecular composition of complex mixtures when conventional 1D NMR methods fail. Copyright © 2002 John Wiley & Sons, Ltd.     

A new signal processing method to observe weak P and O NMR peaks

In NMR spectroscopy, situations may arise where sample concentrations are below the threshold for FT NMR detection, or sample lability constrains allowable acquisition times. In ³¹P NMR, for example, observation of ¹³C satellites may not be practical under given conditions. For ¹⁷O NMR, which is useful to characterize ¹⁷O-labeled phosphate derivatives, similar considerations may apply, and added factors are the cost of isotopically enriched samples and the requirement to obtain spectra at relatively high temperatures if narrow spectral peak line widths are desired. We report here application of a new signal processing method [S.D. Kunikeev, H.S. Taylor, J. Phys. Chem. A 108, 2004 743] to observation of weak ³¹P and ¹⁷O NMR peaks.     

Progress in Hyperpolarized Ultrafast 2D NMR Spectroscopy

An important development in the field of NMR spectroscopy has been the advent of hyperpolarization approaches, capable of yielding nuclear spin states whose value exceeds by orders‐of‐magnitude what even the highest‐field spectrometers can afford under Boltzmann equilibrium. Included among these methods is an ex situ dynamic nuclear polarization (DNP) approach, which yields liquid‐phase samples possessing spin polarizations of up to 50 %. Although capable of providing an NMR sensitivity equivalent to the averaging of about 1 000 000 scans, this methodology is constrained to extract its “superspectrum” within a single—or at most a few—transients. This makes it a poor starting point for conventional 2D NMR acquisition experiments, which require a large number of scans that are identical to one another except for the increment of a certain t₁ delay. It has been recently suggested that by merging this ex situ DNP approach with spatially encoded “ultrafast” methods, a suitable starting point could arise for the acquisition of 2D spectra on hyperpolarized liquids. Herein, we describe the experimental principles, potential features, and current limitations of such integration between the two methodologies. For a variety of small molecules, these new hyperpolarized ultrafast experiments can, for equivalent overall durations, provide heteronuclear correlation spectra at significantly lower concentrations than those currently achievable by conventional 2D NMR acquisitions. A variety of challenges still remain to be solved before bringing the full potential of this new integrated 2D NMR approach to fruition; these outstanding issues are discussed.     

Single‐Scan 2D Hadamard NMR Spectroscopy

Scan and deliver : By combining imaging‐based spectral/spatial 2D radiofrequency manipulations (see scheme, left) with Hadamard‐weighting principles, 2D NMR spectra can be retrieved within a single scan (right). This approach can give homo‐ or heteronuclear correlations with an enhanced sensitivity over conventional ultrafast 2D NMR spectroscopy.

     

2D NMR对Sarcophine所有^1H NMR和^1^3C NMR归属的指定

从中国南海软珊瑚Sarcophyton molle中分离得到大环二萜内酯Sarcophine(1)。本文利用^1H-^1H COSY，HMQC，HMBC等二维谱手段首次对Sarcophine所有^1H NMR、^1^3C NMR的信号归属进行了完全的指定。并第一次报道了其^1^3C NMR数据。     

A NMR method to probe the nature of liquid clathrates

The liquid clathrate formed from [N(CH₃)₄][Al₂(CH₃)₆I] and benzene has been studied using 200 MHz¹H FT-NMR. Two resonances, corresponding to the free and guest benzene are observed. The¹H spin lattice relaxation times,T ₁, for these molecules were measured and found to be distinctly different. The guest benzene protons relax nearly four times faster than the free molecules which is consistent with a more ordered structure of the benzene molecules within the clathrate.     

A double‐Fourier approach to enhance the efficiency of the indirect domain sampling in 2D NMR

The relatively long times that may be involved in high‐resolution two‐dimensional nuclear magnetic resonance (2D NMR) have stimulated the search for alternative schemes to collect these data. Particularly onerous situations arise when both high‐resolution and large spectral widths are sought along the indirect domain. Strategies proposed for dealing with such cases include folding‐over procedures, Hadamard encoding, and nonlinear data sampling. This communication discusses an alternative strategy, which exploits a partial prior knowledge regarding the position of the NMR resonances along the indirect domain together with customized excitations for every particular t₁ increment, to achieve an optimal sampling in terms of resolution and bandwidth. On the basis of such optimized encoding of the indirect‐domain evolution, which can easily be coped with by modern spectrometers, it becomes possible to maximize the resolution of fine structures without compromising on the spectral bandwidths. The processing of the resulting data along the indirect domain is based on the use of two serially applied discrete Fourier transforms; one to distinguish the main bands in the spectrum and the other to resolve the latter's fine features. A number of simple heteronuclear correlation experiments illustrating the significant acquisition time savings and simultaneous improvements in resolution that can be achieved with the resulting double‐Fourier encoding procedure are illustrated. Copyright © 2011 John Wiley & Sons, Ltd.     

Contribution to Structural Elucidation： Behaviours of Substructures Partially Defined from 2D NMR

Structural elucidation (automatic determination of the structure of a molecule from its spectra) is frequently hampered by com-binatorial explosion when trying to assemble the identified sub-structures. We devised a new method which can avoid this pit-fall by a systematic examination of allowed t3C chemical shifts ranges for all substructures chemically possible and combined with a progressive pruning thanks to neighbouring relationships appearing from 2D NMR. This method is explained by a de-tailed example.     

2D NMR studies of acrylonitrile-methyl acrylate copolymers

The microstructure of acrylonitrile-methyl acrylate copolymers prepared by the solution polymerization using 2,2′-azobisisobutyronitrile (AIBN) as free radical initiator was investigated by two-dimensional NMR techniques. 2D-heteronuclear single quantum correlation (HSQC) and the total correlation spectroscopy (TOCSY) have been utilized to resolve the complex ¹H NMR spectrum and to establish the compositional and configurational sequences of acrylonitrile-methyl acrylate copolymers. 2D HSQC and TOCSY showed compositional and configurational sensitivity of methine protons of A and M units upto the triad level. Heteronuclear multiple-bond correlation (HMBC) spectroscopy has been used to study carbon (carbonyl/nitrile)-proton coupling. The carbonyl and nitrile carbons showed compositional sensitivity upto the triad level. The values of reactivity ratios were determined by Kelen-Tudos (KT) and non-linear error in variable method (RREVM).     

Solution-State 2D NMR Spectroscopy of Mixtures HyperpolarizedUsing Optically Polarized Crystals

The HYPNOESYS method (Hyperpolarized NOE System), which relies on the dissolution of optically polarized crystals, has recently emerged as a promising approach to enhance the sensitivity of NMR spectroscopy in the solution state. However, HYPNOESYS is a single-shot method that is not generally compatible with multidimensional NMR. Here we show that 2D NMR spectra can be obtained from HYPNOESYS-polarized samples, using single-scan acquisition methods. The approach is illustrated with a mixture of terpene molecules and a benchtop NMR spectrometer, paving the way to a sensitive, information-rich and affordable analytical method.     

Structure elucidation of a novel group of dithiocarbamate derivatives using 1D and 2D NMR spectroscopy

Compounds 1-7 form a novel group of dithiocarbamates, first synthesized from the reaction of a series of primary amines with carbon disulfide and 3-bromo ethyl pyruvate in the presence of anhydrous potassium phosphate. Structure elucidation of this group of compounds was accomplished using extensive 1D and 2D NMR spectroscopic studies, including (1)H, (13)C, COSY, NOESY, HSQC, and gHMBC experiments. The distinction between the linear structures I, II and the cyclic structure III was made mainly on the basis of the analysis of the cross peak between H-2 and H-4a in the COSY spectra, in combination with the long-range correlation between H-2 and C-4, 6 in the gHMBC spectra.     

胃泌素有关肽溶液构象的2D-NMR研究

用2D NMR深入研究了五肽、四肽胃泌素在 DMSO 中的构象。利用 COSY 谱、Relayed-COSY 谱、DQF-J 分解谱和 NOESY 谱归属了全部共振峰。计算了肽键平面的Φ角、旋转异构体分布和旋转异构体之间自由能差。根据 NOESY 谱得到了距离约束条件。结合Φ角及旋转异构体分布, 推导出五肽胃泌素分子的构象膜型。结果表明, 五肽、四肽胃泌素在 DMSO 中以半角构象存在, 在其主要的旋转异构体中 Trp 的吲哚环和 Met 的 S 原子具有类似5,1-benzothiazocine 三维结构, 可能是具有生物活性的原因。     

Synthesis and structure elucidation of five series of aminoflavones using 1D and 2D NMR spectroscopy

Twenty-six new aminoflavones have been synthesised by two different methods and the structure elucidation was accomplished using extensive 1D (1H, 13C) and 2D NMR spectroscopic studies (COSY, HSQC and HMBC experiments).     

油菜花粉十二肽的二维核磁共振研究

用核磁共振方法对油菜花粉十二肽溶液构象进行了研究。利用２Ｄ ＣＯＳＹ和ＮＯＥＳＹ归属了＾１Ｈ ＮＭＲ谱的全部共振峰。用Ｋａｒｐｌｕｓ方程从肽键Ｎ－Ｈ质子与α－Ｈ质子的偶合常数计算出了所有肽键的二面角θ及Φ，并对其进行不同温度及不同溶剂条件下的观测。结果表明，在水溶液中该肽链为无规卷曲结构，个别肽段存在γ－ｔｕｒｎ构象。     

西贝素β-氮氧化物及其二维核磁共振谱

本文报告应用化学和光谱法(^1H, ^1^3C NMR, ^1^3C,^1H COLOC, noeds和NOESY) , 对分自川产家种华西贝母(F. siechuanica S. C. Che)藓茎中的碱N确证为西贝素β-氮氧化物(imperialine β-N-oxide )3以及3的二维核磁共振谱的研究. 同时, 对文献[4]报告的3中某些^1^3C信号化学位移的归属也进行了纠正.