β-diketone interactions: Part 4. The structures and properties of 1,3-diphenyl-2-methylpropane-1,3-dione,C16H14O2, and 1,3-diphenyl-2-(4-methoxyphenyl)propane-1,3-dione,C22H18O3

The X-ray crystal structures of 1,3-diphenyl-2-methylpropane-1,3-dione and 1,3-diphenyl-2-(4-methoxyphenyl)propane-1,3-dione show them both to adopt cis-diketo (Z,Z) conformations with carbonyl—carbonyl dihedral angles of 89.0(3)° (2-methyl derivative), and 85.5(4)° and 77.7(4)° for the two molecules in the asymmetric unit of the 2-(4-methoxyphenyl) derivative. These are the first acyclic β-diketones with an α-hydrogen to be reported which do not have an enol configuration in the solid state.     

A new type of intermediate, C+(BCH3)11- <--> C(BCH3)11, in a Grob fragmentation coupled with intramolecular hydride transfer. A nonclassical carbocation ylide or a carbenoid?

In solvolysis of alkyl halides Hal-(CH(2))(n)-C(BCH(3))(11)(-) (n = 2, 5, 6, but not 3, 4, or 7) and protonation of alkenes CH(2)=CH-(CH(2))(n)(-)(2)-C(BCH(3))(11)(-) (n = 3, 6, 7, but not 4 or 5) carrying the icosahedral electrofuge -C(BCH(3))(11)(-) attached through its cage carbon atom, generation of incipient positive charge on C(alpha) (as shown in Scheme 1 in the article) leads to simultaneous cleavage of the C(beta)-C(BCH(3))(11)(-) bond. The products are a C(alpha)=C(beta) alkene and a postulated intermediate C(+)(BCH(3))(11)(-) <--> C(BCH(3))(11), trapped as the adduct Nu-C(BCH(3))(11)(-) by one of the nucleophiles (Nu(-)) present. The reaction kinetics is E1, first order in the haloalkylcarborane and zero order in [Nu(-)], and the elimination appears to be concerted, as in the usual E2 mechanism. The process is best viewed as a Grob fragmentation. The loss of the longer chains involves intrachain hydride transfer from the C(alpha)-H bond to an incipient carbocation on C(delta)(') or C(epsilon)(') via a five- or six-membered cyclic transition state, respectively. The electronic structure of the postulated intermediate is believed to lie between those of a nonclassical carbonium ylide C(+)(BCH(3))(11)(-) and a carbenoid C(BCH(3))(11) whose electronic ground state resembles the S(2) state of ordinary carbenes.     

C–H⋯F,C–H⋯O interactions in the crystal structure of 2-(2-nitrophenyl)-3-pentafluorophenyl-oxirane and 2-pentafluorophenyl-3-phenyl-1-(p-tosyl)-aziridine

Existence and nature of C–H?F, C–H?O interactions in 2-(2-nitrophenyl)-3-pentafluorophenyl-oxirane (1) and 2-pentafluorophenyl-3-phenyl-1-(p-tosyl)-aziridine (2) are discussed. In compound 1 with a linear molecule, C–H?F, C–H?O hydrogen bonds assemble adjacent molecules into the two-dimensional layers, F?F, O?F interactions connect adjacent layers into three-dimensional supramolecular networks. Owing to the inductive effect of nitro group, the C–H acidity of nitrophenyl increases and the numbers of C–H?F, C–H?O hydrogen bonds also increase, C–H?F, C–H?O interactions become stronger and more important. 1D ribbons of compound 2 are stabilized by C–H?F, C–H?O intermolecular interactions. Nonplanar tritopic molecule would demand the formation of a π?π packing interactions between benzene rings and pentafluorobenzene rings in 2.     

Induced currents and an <Superscript>1</Superscript>H NMR chemical shifts in transition metal clusters (μ-H)<Subscript>2</Subscript>Fe<Subscript>3</Subscript>(μ<Subscript>3</Subscript>-Q)(CO)<Subscript>9</Subscript> (Q = S,Se, Te)

The quantum chemical calculations of induced electric currents in (μ-H)₂Fe₃(μ₃-Q)(CO)₉ complexes, where Q = S, Se, Te, are carried out. It is demonstrated that the appearance of anomalous ¹Н NMR chemical shifts on bridging hydrogen atoms is, first of all, due to the effect of induced currents on iron atoms.     

Cooperativity in alkane-1,2- and 1,3-polyols: NMR,QTAIM, and IQA study of O─H…OH and C─H…OH bonding interactions

Proton nuclear magnetic resonance chemical shifts and atom–atom interaction energies for alkanepolyols with 1,2-diol and 1,3-diol repeat units, and for their 1:1 pyridine complexes, are computed by density functional theory calculations. In the 1,3-polyols, based on a tG'Gg' repeat unit, the only important intramolecular hydrogen bonding interactions are O─H^…OH. By quantum theory of atoms in molecules analysis of the electron density, unstable bond and ring critical points are found for such interactions in 1,2-polyols with tG'g repeat units, from butane-1,2,3,4-tetrol onwards and in their pyridine complexes from propane-1,2,3-triol onwards. Several features (OH proton shifts and charges, and interaction energies computed by the interacting quantum atoms approach) are used to monitor the dependence of cooperativity on chain length: This is much less regular in 1,2-polyols than in 1,3-polyols and by most criteria has a higher damping factor. Well defined C─H^…OH interactions are found in butane-1,2,3,4-tetrol and higher members of the 1,2-polyol series, as well as in their pyridine complexes: There is no evidence for cooperativity with O─H^…OH bonding. For the 1,2-polyols, there is a tenuous empirical relationship between the existence of a bond critical point for O─H^…OH hydrogen bonding and the interaction energies of competing exchange channels, but the primary/secondary ratio is always less than unity.     

Neodymium(III) triaquatrihydroxo(1,3-diamino-2-propanoltetraacetato)germanium(IV) hydrate [Ge(OH)(μ-HHpdta)(μ-OH)Nd(OH)(H<Subscript>2</Subscript>O)<Subscript>3</Subscript>] · H<Subscript>2</Subscript>O: Synthesis and crystal and molecular structure

The heteronuclear germanium(IV) and neodymium(III) complex with 1,3-diamino-2-propanoltetraacetic acid (H₅Hpdta) [Ge(OH)(μ-HHpdta)(μ-OH)Nd(OH)(H₂O)₃] · H₂O has been synthesized for the first time and characterized by physicochemical methods (elemental analysis, X-ray powder diffraction, thermogravimetry, IR spectroscopy, X-ray crystallography). The crystals are monoclinic: a = 9.331(3) Å, b= 10.279(4) Å, c = 21.474(7) Å, β = 94.59(3)°, V = 2053.0(12) ų, Z = 4, space group P2₁/n, R1 = 0.0245 for 4060 reflections with I > 2σ(I). The compound is built of complex binuclear molecules [Ge(OH)(μ-HHpdta)(μ-OH)Nd(OH)(H₂O)₃] and water molecules of crystallization. The germanium and neodymium atoms are bridged by the oxygen atom of the hydroxo group (Ge-O, 1.798(2) Å; Nd-O, 2.539(2) Å) and the deprotonated oxygen atom of the isopropanol group of the HHpdta^4? ligand (Fe-O, 1.858(2)Å; Nd-O, 2.420(2) Å) to form a dimeric molecule. Each coordination sphere (of the Ge atom and of the Nd atom) contains one nitrogen atom (Ge-N, 2.096(3) Å; Nd-N, 2.807(2) Å) and two carboxylic oxygen atoms from four acetate branches of the octadentate HHpdta^4? ligand (av. Ge-O, 1.928(2) Å; Nd-O, 2.391(2) Å). The coordination polyhedron of the Ge atom is completed to a distorted octahedron by the oxygen atom of the terminal hydroxo group (Ge-O 1.811(2) Å), and the polyhedron of the Nd atom is completed to a nine-vertex polyhedron by the oxygen atoms of the terminal hydroxo group (Nd-O 2.494(3) Å) and three water molecules (Nd-O, 2.512(3), 2.520(3), and 2.723(3) Å). In the crystal structure, the complex molecules and the water molecules of crystallization are joined by a hydrogen bond system.     

Heterobimetallic compounds [Ru(η<Superscript>5</Superscript>-Cp)(dppf)X] (X = Cl,Br, I and N<Subscript>3</Subscript>): synthesis,electrochemical analysis,and the crystal structure of [Ru(η<Superscript>5</Superscript>-Cp)(dppf)I] [dppf = 1,1′-bis(diphenylphosphino)ferrocene]

A series of new ruthenium-iron based derivatives [Ru(η⁵-Cp)(dppf)Cl] (1), [Ru(η⁵-Cp)(dppf)Br] (2), [Ru(η⁵-Cp)(dppf)I] (3) and [Ru(η⁵-Cp)(dppf)N₃] (4) were obtained by reactions of [Ru(η⁵-Cp)(PPh₃)₂Cl] with 1,1′-bis(diphenylphosphino) ferrocene (dppf) and characterized by IR, NMR (¹H, ¹³C and ³¹P), ⁵⁷Fe Mössbauer spectroscopy and cyclic voltammetry. Additionally, the compound (3) was structurally characterized by X-ray crystallography, and the results were as follows: orthorhombic, Pbca, a = 18.2458(10), b = 20.9192(11), c = 34.4138(19) Å, α = β = γ = 90°, V = 13135.3(12) Å³ and Z = 16.     

Syntheses and characterization of [Ru(η5-C5H5) (AsPh3)(L)X] and [Ru(η5-C5H5)(AsPh3)(L)(MeCN)]+mY− (L = PPh3 or AsPh3; X = F,Cl, Br,I, CN,H or SnCl3; Y = HgCl3, Zn2Cl6 or BPh4; m = 1 or 2)

The syntheses of the complexes [(η⁵-C₅H₅)Ru(AsPh₃)(L)X] (L = PPh₃ or AsPh₃; X = Cl, F, Br, I, H, CN or SnCl₃) and [(η⁵-C₅H₅)Ru(AsPh₃)(L)(MeCN)]⁺Y⁻ (Y = HgCl₃, BPh₄ or Zn₂Cl₆) are described. They were characterized by elemental analyses, IR, UV and visible, PMR spectroscopy, X-ray powder diffraction, and mass spectral studies.     

Cooperative effect between pnicogen bond and hydrogen bond interactions in typical X…AsH2F…HF complexes (X = NR3, PR3 and OR2; R = CH3, H,F)

Abstract

Ab initio MP2/aug-cc-pVDZ calculations have been carried out to study the effect of F???H···F hydrogen bonds on the As···X pnicogen bond in X…AsH₂F…HF complexes (X?=?NR₃, PR₃ and OR₂; R?=?CH₃, H, F). The formation of F???H···F hydrogen bonds leads to shortening of the As···X distances and strengthening of the As···X interactions. The decrease of the pnicogen bond distance in the complexes is cost of electron-giving of X molecule that increased in the order R?=?CH₃?>?H?>?F for R substituents on X molecule. These effects are studied in the relationships of the structural characteristics, energetic, charge-transfer and electron density assets of the complexes. A satisfactory cooperative effect, with values that ranged between ?0.10 and ?3.98?kcal/mole, is found in the complexes.     

Synthesis,crystal structure and magnetic properties of a novel manganese(II)-nitronyl nitroxide-azido(μ<Subscript>1,1</Subscript> and μ<Subscript>1,3</Subscript>) one-dimensional complex

A novel one-dimensional manganese(II) complex containing nitronyl nitroxide radical [Mn₂(IM2-py)₂(Ac)₂(μ_1,1-N₃)(μ_1,3-N₃) · EtOH] _n was synthesized and characterized structurally and magnetically. It crystallizes in the monoclinic space group p2₁/n. Each Mn(II) ion is six-coordinated in a distorted octahedral environment. The two N atoms of the nitronyl nitroxide radical and the two O atoms of acetate ligands are in the equatorial plane, whereas the two different azido bridging ligands are in trans axial position. Mn(II) ions are linked by nitrogen atom of μ_1,1-azido and oxygen atoms of two carboxy groups to form a Mn-Mn unit. Mn-Mn units are linked by azido ligands through μ_1,3 bridging style to form a one-dimensional chain. The compound is connected by the coordination bonds, π-π interactions and hydrogen bonds as a three-dimensional structure. Magnetic susceptibility data support that there are stronger antiferromagnetic interactions between the radical and Mn(II) ion, weak antiferromagnetic interactions between the Mn-R units, and very weak antiferromagnetic interactions between the R-Mn-Mn-R units.     

Kinetics of Intramolecular Hydrogen Atom Transfer in the Radicals >Si(O·)(R) (R = H,D, CH3, CD3, and C2H5)

Methods are developed for obtaining oxy radicals by the photodecomposition and thermal decomposition of precursors (Si–O)₂Si(N=N–O^·)(R) and (Si–O)₂Si(O–C^·=O)(R). The mechanism of these processes is established. Kinetic data are obtained for the reaction of hydrogen atom transfer in oxy radicals (Si–O)₂Si(O^·)(R) (R = H, D, CH₃, CD₃, and C₂H₅). The activation energies of hydrogen atom transfer are found for three-, four-, and five-membered transition states: 13.5 ± 1, 18 ± 1, and <10 kcal/mol, respectively. For the reaction of H(D) atom transfer in the (Si–O)₂Si(O^·)(H(D)) radical, the kinetic isotope effect is found. Quantum-chemical calculations were used to determine the structures of transition states in the studied processes. Experimental studies were carried out using ESR spectroscopy.     

Diagnosing the Protonation Site of <Emphasis Type="BoldItalic">b</Emphasis><Subscript><Emphasis Type="BoldItalic">2</Emphasis></Subscript> Peptide Fragment Ions using IRMPD in the X–H (X = O,N, and C) Stretching Region

Charge-directed fragmentation has been shown to be the prevalent dissociation step for protonated peptides under the low-energy activation (eV) regime. Thus, the determination of the ion structure and, in particular, the characterization of the protonation site(s) of peptides and their fragments is a key approach to substantiate and refine peptide fragmentation mechanisms. Here we report on the characterization of the protonation site of oxazolone b ₂ ions formed in collision-induced dissociation (CID) of the doubly protonated tryptic model-peptide YIGSR. In support of earlier work, here we provide complementary IR spectra in the 2800–3800 cm^–1 range acquired on a table-top laser system. Combining this tunable laser with a high power CO₂ laser to improve spectroscopic sensitivity, well resolved bands are observed, with an excellent correspondence to the IR absorption bands of the ring-protonated oxazolone isomer as predicted by quantum chemical calculations. In particular, it is shown that a band at 3445 cm^–1, corresponding to the asymmetric N–H stretch of the (nonprotonated) N-terminal NH₂ group, is a distinct vibrational signature of the ring-protonated oxazolone structure.     

Coordination behavior of 1,4-diallylpiperazinium and 1-allyloxybenzotriazole toward silver(I) in the crystalline π-complexes [Ag2(C4H8N2(C3H5)2(H+)2)(H2O)2(NO3)2](NO3)2 and [Ag(C6H4N3(OC3H5)(NO3))]

Reactions of a solution of AgNO₃ in aqueous methanol with solutions of 1,4-diallylpiperazine (acidified with HNO₃ to pH = 4) and 1-allyloxybenzotriazole in ethanol gave the crystalline silver(I) π-complexes [Ag₂(C₄H₈N₂(C₃H₅)₂(H⁺)₂)(H₂O)₂(NO₃)₂](NO₃)₂ (I) and [Ag(C₆H₄N₃(OC₃H₅)(NO₃))] (II). Their crystal structures were determined by X-ray diffraction. Crystals of complexes I and II are monoclinic, space group P2₁/c; for I: a = 7.053(3)Å, b = 9.389(3)Å, c = 15.488(4)Å, β = 91.60°, V = 1025.3(6)ų, Z = 4; for II: a = 10.650(4)Å, b = 15.062(5)Å, c = 7.412(4)Å, β = 104.20(3)°, V = 1152.6(8)ų, Z = 4. In both structures, the organic components act as bidentate ligands forming with AgNO₃ 34- and 14-membered topological rings, respectively. In complex I, the nearly tetrahedral environment of the Ag(I) atom is made up of the olefinic C=C bond, the O atoms of the nitrate anions, and the water molecule. 1-Allyloxybenzotriazole in structure II causes the deformation of the coordination polyhedron of Ag into a trigonal pyramid via inclusion of the ligand N atom in its coordination sphere. The topological units of the complexes form infinite polymer layers linked by anionic NO ₃ ^? bridges. In structure I, these layers are united through a system of hydrogen bonds into a three-dimensional framework.     

Intermolecular O—H⃛O and C—H⃛π(C5H5), and intramolecular C—H⃛O interactions in 2-(ferrocenyl)thiophene-3-carboxylic acid

The title compound, [Fe(C₅H₅)(C₁₀H₇O₂S)], an important precursor en route to organometallic donor–π–acceptor systems, forms dimers in the solid state through cyclic intermolecular carboxyl­ic acid O—H⃛O hydrogen bonds, graph set R(8) [O⃛O 2.661 (2) Å and O—H⃛O 175°]. Intermolecular C_Cp—H⃛π_Cp interactions between the unsubstituted cyclo­penta­dienyl (Cp) rings and C_thiazole—H⃛π_Cp interactions link neighbouring mol­ecules into a three-dimensional network [C⃛Cg 3.753 (7) Å and C—H⃛Cg 156°, and C⃛Cg 3.687 (3) Å and C—H⃛Cg 129°; Cg is the ring centroid]. Intramolecular C—H⃛O inter­actions are present, graph set S(7) [C⃛O 2.925 (3) Å and C—H⃛O 120°, and the closest C—H⃛S_thienyl contact has a C⃛S distance of 3.058 (2) Å].     

An Experimental Exploration of C−H⋅⋅⋅X Hydrogen Bond in [CHCl3−X(CH3)2] Complexes (X=O,S, and Se)

Among the conglomeration of hydrogen bond donors, the C−H group is prevalent in chemistry and biology. In the present work, CHCl₃ has been selected as the hydrogen bond donor and are X(CH₃)₂ are the hydrogen bond acceptors. Formation of C−H⋅⋅⋅X hydrogen bond under the matrix isolation condition is confirmed by the observation of red-shift in the C−H stretching frequency of CHCl₃ and comparison with the simulated spectra. Stabilisation energy of all the three complexes is almost equal although the observed red-shift for the C−H⋅⋅⋅O complex is less compared to the C−H⋅⋅⋅S/Se complexes. The nature and origin of the hydrogen bond have been delineated using Natural Bond Orbital, Atoms in Molecules, Non-Covalent Interaction analyses, and Energy Decomposition Analysis. Charge transfer is found to be proportional to the observed red-shift. This work provides the first impression of C−H⋅⋅⋅Se hydrogen bond and its comparison with C−H⋅⋅⋅O/S hydrogen bond interaction under experimental condition.     

Synthesis and characterization of heteronuclear germanium(IV) lanthanide 1,3-diamino-2-propanoltetraacetates: Crystal and molecular structure of the [Ge(OH)(μ-Hpdta)(μ-OH) Ln(H<Subscript>2</Subscript>O)<Subscript>3</Subscript>] · 2H<Subscript>2</Subscript>O complexes (Ln = Tb,Yb)

In the course of systematic studies, heteronuclear germanium lanthanide complexes based on 1,3-diamino-2-propanoltetraacetic acid (H₅Hpdta) have been synthesized (Ln = Pr (I), Nd (II, the structure was described in [1]), Sm (III), Eu (IV), Gd (V), Tb (VI), Dy (VII), Ho (VIII), Er (IX), Tm (X), Yb (XI), Lu (XII)). Comparative analysis of their structure as a function of the lanthanide ion has been performed. The analysis is based on a combination of physicochemical data on complexes I–XII, including X-ray crystallographic data for two heteronuclear [Ge(OH)(μ-Hpdta)(μ-OH)Ln(H₂O)₃] · 2H₂O complexes (Ln = Tb (VI) and Yb (XI). Isostructural crystals of VI and XI are monoclinic, Z = 4, space group P2₁/n, a = 9.340(4) and 9.3133(10) Å, b = 10.4839(14) and 10.4561(10) Å, c = 20.246(2) and 20.1222(10) Å, β = 95.12(3)° and 95.275(10)°, V = 1974.5(10) and 1951.2(3) A³, R1 = 0.0277 and 0.0241 for 4527 and 4751 reflections with I > 2σ(I). Crystals of VI and XI are composed of binuclear [Ge(OH)(μ-Hpdta)(μ-OH)Ln(H₂O)₃] molecules and crystal water molecules. The Ge and Ln atoms in VI and XI are linked by the bridging oxygen atom of the hydroxo group (Ge-O, 1.806(2) and 1.812(2) Å; Ln-O, 2.445(3) and 2.405(2) Å, respectively) and by the deprotonated oxygen atom of the isopropanol group of the Hpdta5-ligand (Ge-O, 1.865(2) and 1.864(2) Å; Ln-O, 2.302(2) and 2.255(2) Å in VI and XI, respectively). The coordination sphere of each of the Ge and Ln atoms involves one nitrogen atom (Ge-N, 2.097(3) and 2.096(3) Å; Ln-N, 2.670(3) and 2.628(3) Å in VI and XI, respectively) and two carboxyl oxygen atoms of four acetate arms of the completely deprotonated heptadentate Hpdta^5? ligand (av. Ge-O, 1.922(3) and 1.920(3) Å; Ln-O, 2.349(2) and 2.298(2) Å in VI and XI, respectively). The coordination polyhedron of the Ge atom is completed to a distorted octahedron by the oxygen atom of the terminal hydroxo group (Ge-O, 1.811(2) Å in VI and 1.810(2) Å in XI), and the coordination polyhedron of the Ln atom is completed to an eight-vertex polyhedron by the oxygen atoms of three water molecules (av. Ln-O, 2.378(3) Å in VI and 2.342(3) Å in XI). In the crystals of VI and XI, complex molecules and crystal water molecules are combined by a system of hydrogen bonds into a three-dimensional framework.     

NMR study (1H, 13C and 31P) of the {(C2H5)2N}nPX3−n compounds (X = Cl,C2H5; n = 0, 1, 2, 3)

¹H, ¹³C and ³¹P NMR data of the compounds {(C₂H₅)₂N}_nPX_3−n, (X = Cl, C₂H₅; n = 0, 1, 2, 3) are reported. While the ¹H and ¹³C resonances from the PEt moiety rather follow the electron-withdrawing effect of the NEt₂ substituent, ¹H and ¹³C chemical shift data from the NEt₂ moiety reveal a quite important shift contribution originating from sterically induced polarization of the CH bonds . ³¹P chemical shift data are interpreted in terms of inductive effects but the anomalous diamagnetic shift deviation from linearity for X = Cl suggests a minor contribution from

multiple bonding. The general trend observed in the ³¹P-couplings is quite straightforward and can be qualitatively explained by Bent's rule.     

Calorimetric and thermal decomposition kinetic study of Tb(Tyr)(Gly)<Subscript>3</Subscript>Cl<Subscript>3</Subscript>·3H<Subscript>2</Subscript>O

The solid-state ternary complex of terbium chloride with L-tyrosine and glycine, [Tb(Tyr)(Gly)₃Cl₃·3H₂O], was synthesized and characterized. Using a solution-reaction isoperibol calorimeter, the enthalpy of reaction for the following reaction, TbCl₃·6H₂O(s)+Tyr(s)+3Gly(s)=Tb(Tyr)(Gly)₃Cl₃·3H₂O(s)+3H₂O(l), was determined to be (5.1±0.6) kJ mol^-1. The standard enthalpy of formation of Tb(Tyr)(Gly)₃Cl₃-3H₂O at T=298.15 K has been derived as -(4267.3±2.3) kJ mol^-1. The thermal decomposition kinetics of the complex was studied by non-isothermal thermogravimetry in the temperature range of 325-675 K. Two main mass loss stages existed in the process of the decomposition of the complex, the kinetic parameters for the second stage were analyzed by means of differential and integral methods, respectively. Comparing the results of differential and integral methods, mechanism functions of the thermal decomposition reaction for its second stage were proposed. The kinetic equation can be expressed as: d/dt=Aexp(-E/RT)(1-)². The average values of the apparent activation energy E and pre-exponential factor A were 213.18 kJ mol^-1 and 2.51·10²⁰ s^-1, respectively.